Wall clock time and date at job start Tue Mar 31 2020 23:53:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 109.47077 * 2 1 4 4 N 1.46898 * 109.47258 * 240.00215 * 2 1 3 5 5 C 1.46895 * 111.00406 * 84.99684 * 4 2 1 6 6 C 1.53003 * 109.47414 * 180.02562 * 5 4 2 7 7 H 1.09002 * 110.01047 * 53.61579 * 6 5 4 8 8 C 1.53881 * 110.02607 * 292.19267 * 6 5 4 9 9 C 1.54156 * 108.70559 * 193.52625 * 8 6 5 10 10 S 1.82921 * 105.08660 * 27.90679 * 9 8 6 11 11 O 1.42099 * 109.35761 * 244.47833 * 10 9 8 12 12 O 1.42099 * 109.47382 * 111.30981 * 10 9 8 13 13 C 1.55041 * 110.03191 * 175.00209 * 6 5 4 14 14 C 1.50694 * 109.47045 * 119.99643 * 2 1 3 15 15 C 1.38304 * 119.93239 * 79.73348 * 14 2 1 16 16 C 1.38093 * 120.06923 * 179.72394 * 15 14 2 17 17 C 1.38877 * 119.93121 * 0.54435 * 16 15 14 18 18 O 1.35755 * 120.06915 * 179.75095 * 17 16 15 19 19 C 1.34831 * 116.99803 * 174.44211 * 18 17 16 20 20 H 1.07992 * 120.00570 * 5.05267 * 19 18 17 21 21 C 1.38657 * 119.99510 * 185.05398 * 19 18 17 22 22 N 1.31559 * 119.99453 * 179.97438 * 21 19 18 23 23 Si 1.86800 * 120.00246 * 359.97438 * 21 19 18 24 24 H 1.48499 * 109.46931 * 90.00160 * 23 21 19 25 25 H 1.48504 * 109.46926 * 210.00034 * 23 21 19 26 26 H 1.48499 * 109.46970 * 330.00011 * 23 21 19 27 27 C 1.38878 * 119.86390 * 359.72793 * 17 16 15 28 28 C 1.38094 * 119.92761 * 359.97438 * 27 17 16 29 29 H 1.08994 * 109.46966 * 300.00263 * 1 2 3 30 30 H 1.08999 * 109.47111 * 60.00410 * 1 2 3 31 31 H 1.08997 * 109.46892 * 180.02562 * 1 2 3 32 32 H 1.00904 * 110.99968 * 208.95352 * 4 2 1 33 33 H 1.09002 * 109.47346 * 60.00207 * 5 4 2 34 34 H 1.09000 * 109.47386 * 299.99906 * 5 4 2 35 35 H 1.08998 * 109.64719 * 313.38313 * 8 6 5 36 36 H 1.09003 * 109.64842 * 73.67547 * 8 6 5 37 37 H 1.09008 * 110.32309 * 269.00889 * 9 8 6 38 38 H 1.09002 * 110.32617 * 146.81120 * 9 8 6 39 39 H 1.09004 * 110.78696 * 279.99617 * 13 6 5 40 40 H 1.09004 * 110.79205 * 43.44918 * 13 6 5 41 41 H 1.08005 * 119.96089 * 359.97438 * 15 14 2 42 42 H 1.08001 * 120.03313 * 180.26958 * 16 15 14 43 43 H 0.97012 * 119.99797 * 179.97438 * 22 21 19 44 44 H 1.07996 * 120.03678 * 179.97438 * 27 17 16 45 45 H 1.08004 * 119.96491 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6924 -1.1994 5 6 2.0825 0.2226 -2.3469 6 6 2.5951 -0.5332 -3.5745 7 1 1.9899 -1.4239 -3.7437 8 6 4.0691 -0.9267 -3.3735 9 6 4.6513 -1.3719 -4.7297 10 16 3.6815 -0.4621 -5.9858 11 8 2.9435 -1.3874 -6.7722 12 8 4.5124 0.5007 -6.6197 13 6 2.5476 0.3860 -4.8221 14 6 2.0323 -0.7103 1.2305 15 6 2.0609 -2.0926 1.2660 16 6 2.5260 -2.7464 2.3900 17 6 2.9547 -2.0145 3.4896 18 8 3.4076 -2.6544 4.5979 19 6 3.9154 -1.8868 5.5833 20 1 3.8738 -0.8105 5.5053 21 6 4.4910 -2.4795 6.6969 22 7 4.9868 -1.7306 7.6581 23 14 4.5623 -4.3412 6.8322 24 1 5.8252 -4.8336 6.2256 25 1 4.5137 -4.7357 8.2630 26 1 3.4048 -4.9343 6.1156 27 6 2.9194 -0.6267 3.4531 28 6 2.4590 0.0213 2.3238 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 2.9174 -1.1204 -1.0287 33 1 2.7588 1.0462 -2.1183 34 1 1.0871 0.6162 -2.5526 35 1 4.6290 -0.0705 -2.9976 36 1 4.1352 -1.7475 -2.6592 37 1 4.5264 -2.4469 -4.8608 38 1 5.7051 -1.1017 -4.7964 39 1 1.5380 0.4324 -5.2303 40 1 2.9151 1.3838 -4.5818 41 1 1.7229 -2.6612 0.4122 42 1 2.5522 -3.8258 2.4154 43 1 5.3892 -2.1452 8.4374 44 1 3.2517 -0.0548 4.3068 45 1 2.4317 1.1006 2.2946 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000038083354.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:53:19 Heat of formation + Delta-G solvation = -101.496524 kcal Electronic energy + Delta-G solvation = -26472.459252 eV Core-core repulsion = 22581.608367 eV Total energy + Delta-G solvation = -3890.850885 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.97561 -39.42047 -38.28997 -38.02375 -37.02464 -36.06288 -34.42693 -32.29091 -31.78975 -30.70539 -29.47956 -27.28495 -26.79635 -24.78445 -23.75442 -23.29094 -21.33676 -21.21320 -19.78575 -19.67425 -19.09561 -17.82450 -17.62452 -16.96865 -16.65429 -16.61858 -16.25477 -15.78241 -15.62096 -15.39231 -15.36655 -15.07040 -14.78248 -14.57324 -14.29762 -14.10892 -13.98337 -13.76989 -13.74189 -13.21082 -13.13344 -13.07464 -12.94355 -12.92619 -12.69076 -12.54352 -12.37184 -12.30652 -12.15739 -12.00562 -11.68367 -11.56583 -11.44810 -11.26065 -11.09941 -10.89013 -9.77973 -9.30244 -8.97647 -8.50151 -6.22508 -0.84170 0.59175 0.64893 1.31809 1.35439 1.52056 1.66843 2.27859 2.69837 2.76475 3.03367 3.08527 3.17054 3.26107 3.52042 3.71869 3.82177 3.91385 4.05067 4.08605 4.11995 4.22848 4.38513 4.46284 4.52149 4.61193 4.66378 4.74202 4.76994 4.87545 4.91190 4.96016 4.97986 5.01141 5.10340 5.16504 5.24492 5.29504 5.40768 5.49708 5.58570 5.72405 5.81070 5.92322 6.20498 6.27507 6.54881 6.84528 7.59846 8.61401 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.019902 B = 0.002029 C = 0.001937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.548409 B =13795.085512 C =14454.113452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.145 3.855 3 H 0.055 0.945 4 N -0.686 5.686 5 C 0.070 3.930 6 C -0.086 4.086 7 H 0.110 0.890 8 C -0.122 4.122 9 C -0.573 4.573 10 S 2.385 3.615 11 O -0.984 6.984 12 O -0.988 6.988 13 C -0.565 4.565 14 C -0.155 4.155 15 C -0.047 4.047 16 C -0.193 4.193 17 C 0.119 3.881 18 O -0.246 6.246 19 C -0.398 4.398 20 H 0.081 0.919 21 C 0.008 3.992 22 N -0.924 5.924 23 Si 0.971 3.029 24 H -0.265 1.265 25 H -0.269 1.269 26 H -0.263 1.263 27 C -0.238 4.238 28 C -0.068 4.068 29 H 0.049 0.951 30 H 0.068 0.932 31 H 0.056 0.944 32 H 0.347 0.653 33 H 0.045 0.955 34 H 0.087 0.913 35 H 0.093 0.907 36 H 0.103 0.897 37 H 0.148 0.852 38 H 0.149 0.851 39 H 0.154 0.846 40 H 0.155 0.845 41 H 0.155 0.845 42 H 0.126 0.874 43 H 0.284 0.716 44 H 0.105 0.895 45 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.736 3.539 -25.254 26.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.036 3.964 3 H 0.073 0.927 4 N -0.319 5.319 5 C -0.060 4.060 6 C -0.106 4.106 7 H 0.128 0.872 8 C -0.161 4.161 9 C -0.705 4.705 10 S 2.575 3.425 11 O -0.981 6.981 12 O -0.985 6.985 13 C -0.697 4.697 14 C -0.156 4.156 15 C -0.065 4.065 16 C -0.212 4.212 17 C 0.070 3.930 18 O -0.154 6.154 19 C -0.474 4.474 20 H 0.098 0.902 21 C -0.190 4.190 22 N -0.565 5.565 23 Si 0.793 3.207 24 H -0.190 1.190 25 H -0.194 1.194 26 H -0.187 1.187 27 C -0.257 4.257 28 C -0.086 4.086 29 H 0.068 0.932 30 H 0.087 0.913 31 H 0.075 0.925 32 H 0.166 0.834 33 H 0.063 0.937 34 H 0.105 0.895 35 H 0.112 0.888 36 H 0.121 0.879 37 H 0.166 0.834 38 H 0.167 0.833 39 H 0.172 0.828 40 H 0.173 0.827 41 H 0.173 0.827 42 H 0.144 0.856 43 H 0.094 0.906 44 H 0.123 0.877 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -6.164 3.102 -26.229 27.121 hybrid contribution 1.122 0.208 1.911 2.226 sum -5.042 3.311 -24.317 25.054 Atomic orbital electron populations 1.21759 0.93505 1.02281 1.01419 1.20159 0.95815 0.94774 0.85690 0.92695 1.60603 1.33957 1.33299 1.04060 1.22000 1.01909 0.93418 0.88663 1.21896 0.96946 0.98681 0.93097 0.87204 1.22155 0.94159 1.04347 0.95396 1.30333 1.13967 1.14507 1.11684 1.08876 0.78112 0.76736 0.78768 1.93566 1.72244 1.63741 1.68536 1.93555 1.68008 1.61669 1.75257 1.30560 1.16538 1.11475 1.11139 1.19804 1.05496 0.93762 0.96554 1.20857 0.95481 0.93896 0.96233 1.20563 1.07965 1.00045 0.92637 1.19727 0.94139 0.92045 0.87090 1.83520 1.71384 1.36399 1.24111 1.20689 1.37771 0.91410 0.97529 0.90192 1.25291 0.94906 1.04875 0.93916 1.69735 1.39278 1.38004 1.09473 0.85209 0.79595 0.78000 0.77863 1.19030 1.19362 1.18702 1.21239 1.09542 0.94056 1.00894 1.20917 0.96031 0.99882 0.91812 0.93164 0.91303 0.92510 0.83357 0.93713 0.89453 0.88798 0.87882 0.83372 0.83272 0.82757 0.82677 0.82746 0.85607 0.90618 0.87741 0.84962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.20 9.39 71.98 0.68 -1.52 16 2 C 0.14 2.54 2.81 44.17 0.12 2.67 16 3 H 0.06 0.90 7.66 -2.38 -0.02 0.88 16 4 N -0.69 -9.09 5.70 -495.46 -2.82 -11.91 16 5 C 0.07 0.60 4.96 86.30 0.43 1.03 16 6 C -0.09 -0.55 2.82 -9.80 -0.03 -0.58 16 7 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 8 C -0.12 -0.72 5.25 31.28 0.16 -0.55 16 9 C -0.57 -3.59 7.26 72.37 0.53 -3.06 16 10 S 2.39 27.37 6.10 -56.49 -0.34 27.02 16 11 O -0.98 -19.57 18.15 -127.47 -2.31 -21.89 16 12 O -0.99 -19.67 18.15 -127.47 -2.31 -21.98 16 13 C -0.56 -2.96 6.67 72.68 0.48 -2.48 16 14 C -0.16 -3.97 4.71 -19.83 -0.09 -4.06 16 15 C -0.05 -1.26 9.00 22.25 0.20 -1.06 16 16 C -0.19 -6.86 9.99 22.39 0.22 -6.64 16 17 C 0.12 5.33 6.65 22.58 0.15 5.48 16 18 O -0.25 -13.10 8.59 -22.80 -0.20 -13.30 16 19 C -0.40 -23.08 9.95 67.92 0.68 -22.41 16 20 H 0.08 4.87 5.44 -2.91 -0.02 4.85 16 21 C 0.01 0.48 5.49 84.83 0.47 0.94 16 22 N -0.92 -54.70 13.96 21.61 0.30 -54.40 16 23 Si 0.97 44.83 28.62 68.60 1.96 46.79 16 24 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 25 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 26 H -0.26 -12.09 7.11 99.48 0.71 -11.39 16 27 C -0.24 -9.94 9.17 22.39 0.21 -9.74 16 28 C -0.07 -2.13 9.66 22.25 0.21 -1.91 16 29 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.07 0.90 7.45 -2.39 -0.02 0.88 16 31 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.35 4.63 6.78 -89.69 -0.61 4.03 16 33 H 0.04 0.35 7.99 -2.39 -0.02 0.33 16 34 H 0.09 0.69 7.44 -2.39 -0.02 0.67 16 35 H 0.09 0.42 8.04 -2.39 -0.02 0.40 16 36 H 0.10 0.61 7.44 -2.39 -0.02 0.59 16 37 H 0.15 0.69 8.14 -2.38 -0.02 0.67 16 38 H 0.15 0.67 8.14 -2.39 -0.02 0.65 16 39 H 0.15 0.45 8.14 -2.38 -0.02 0.43 16 40 H 0.16 0.37 8.10 -2.38 -0.02 0.35 16 41 H 0.15 3.25 7.72 -2.91 -0.02 3.23 16 42 H 0.13 4.18 8.06 -2.91 -0.02 4.16 16 43 H 0.28 15.43 8.31 -92.70 -0.77 14.66 16 44 H 0.10 4.90 5.64 -2.91 -0.02 4.88 16 45 H 0.13 3.45 8.03 -2.91 -0.02 3.43 16 Total: -1.00 -78.32 377.33 -0.91 -79.23 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: 0.40 Total: 14.32 kcal Atomic # 6 Polarization: -48.31 SS G_CDS: 4.42 Total: -43.89 kcal Atomic # 7 Polarization: -63.79 SS G_CDS: -2.52 Total: -66.31 kcal Atomic # 8 Polarization: -52.35 SS G_CDS: -4.82 Total: -57.17 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 1.96 Total: 46.79 kcal Atomic # 16 Polarization: 27.37 SS G_CDS: -0.34 Total: 27.02 kcal Total: -78.32 -0.91 -79.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038083354.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.264 kcal (2) G-P(sol) polarization free energy of solvation -78.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds