Wall clock time and date at job start Tue Mar 31 2020 23:53:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.46926 * 2 1 4 4 N 1.46893 * 109.47185 * 120.00029 * 2 1 3 5 5 C 1.46909 * 111.00111 * 274.99839 * 4 2 1 6 6 C 1.52995 * 109.47316 * 180.02562 * 5 4 2 7 7 H 1.09001 * 109.64272 * 305.43185 * 6 5 4 8 8 C 1.53872 * 109.64648 * 184.99954 * 6 5 4 9 9 C 1.55048 * 106.62592 * 192.96387 * 8 6 5 10 10 S 1.83294 * 102.56234 * 42.43639 * 9 8 6 11 11 O 1.42099 * 109.35605 * 90.18679 * 10 9 8 12 12 O 1.42105 * 109.35254 * 223.25144 * 10 9 8 13 13 C 1.54163 * 109.64752 * 65.72350 * 6 5 4 14 14 C 1.50702 * 109.46953 * 240.00124 * 2 1 3 15 15 C 1.38297 * 119.93318 * 99.99733 * 14 2 1 16 16 C 1.38095 * 120.07013 * 179.97438 * 15 14 2 17 17 C 1.38878 * 119.92880 * 0.02562 * 16 15 14 18 18 O 1.35760 * 120.06868 * 179.97438 * 17 16 15 19 19 C 1.34831 * 116.99715 * 354.46842 * 18 17 16 20 20 H 1.07997 * 120.00242 * 5.05103 * 19 18 17 21 21 C 1.38656 * 119.99822 * 185.05388 * 19 18 17 22 22 N 1.31551 * 119.99935 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 119.99966 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47105 * 60.00161 * 23 21 19 25 25 H 1.48497 * 109.46965 * 179.97438 * 23 21 19 26 26 H 1.48496 * 109.47737 * 300.00333 * 23 21 19 27 27 C 1.38878 * 119.86540 * 359.97438 * 17 16 15 28 28 C 1.38096 * 119.92779 * 359.97438 * 27 17 16 29 29 H 1.08997 * 109.47170 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.47033 * 299.99962 * 1 2 3 31 31 H 1.08994 * 109.47142 * 60.00263 * 1 2 3 32 32 H 1.00901 * 111.00590 * 151.04891 * 4 2 1 33 33 H 1.08998 * 109.46879 * 300.00485 * 5 4 2 34 34 H 1.09003 * 109.46784 * 59.99750 * 5 4 2 35 35 H 1.09003 * 110.02924 * 312.25869 * 8 6 5 36 36 H 1.09006 * 110.03015 * 73.62863 * 8 6 5 37 37 H 1.08997 * 110.79145 * 160.69868 * 9 8 6 38 38 H 1.08994 * 110.79437 * 284.16757 * 9 8 6 39 39 H 1.09001 * 110.32466 * 266.66489 * 13 6 5 40 40 H 1.09003 * 110.32068 * 28.85857 * 13 6 5 41 41 H 1.08000 * 119.96365 * 0.25322 * 15 14 2 42 42 H 1.07998 * 120.03481 * 179.97438 * 16 15 14 43 43 H 0.96999 * 120.00238 * 179.97438 * 22 21 19 44 44 H 1.08001 * 120.03376 * 179.97438 * 27 17 16 45 45 H 1.08002 * 119.96622 * 179.97438 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 2.0825 0.2227 2.3469 6 6 2.5963 -0.5328 3.5741 7 1 1.9775 -1.4131 3.7481 8 6 2.5455 0.3871 4.8066 9 6 3.3738 -0.3111 5.9158 10 16 4.8362 -0.9232 4.9957 11 8 5.8522 0.0701 5.0114 12 8 5.1352 -2.2480 5.4140 13 6 4.0570 -0.9672 3.3414 14 6 2.0323 -0.7104 -1.2305 15 6 2.4585 0.0212 -2.3240 16 6 2.9198 -0.6269 -3.4529 17 6 2.9550 -2.0147 -3.4894 18 8 3.4075 -2.6548 -4.5979 19 6 3.6997 -1.8905 -5.6695 20 1 3.6485 -0.8143 -5.5953 21 6 4.0659 -2.4863 -6.8668 22 7 4.1286 -3.7972 -6.9570 23 14 4.4700 -1.4274 -8.3517 24 1 5.6146 -0.5381 -8.0287 25 1 4.8297 -2.2997 -9.4984 26 1 3.2878 -0.6027 -8.7082 27 6 2.5264 -2.7466 -2.3897 28 6 2.0671 -2.0926 -1.2634 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 2.9174 -1.1205 1.0288 33 1 2.7589 1.0463 2.1181 34 1 1.0871 0.6164 2.5525 35 1 2.9838 1.3561 4.5675 36 1 1.5139 0.5150 5.1347 37 1 3.6711 0.4027 6.6840 38 1 2.8161 -1.1401 6.3514 39 1 4.0911 -1.9776 2.9337 40 1 4.5568 -0.2699 2.6689 41 1 2.4347 1.1005 -2.2935 42 1 3.2521 -0.0551 -4.3067 43 1 4.3844 -4.2140 -7.7947 44 1 2.5521 -3.8260 -2.4153 45 1 1.7332 -2.6611 -0.4080 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000038083355.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:53:25 Heat of formation + Delta-G solvation = -105.077930 kcal Electronic energy + Delta-G solvation = -26538.102685 eV Core-core repulsion = 22647.096499 eV Total energy + Delta-G solvation = -3891.006187 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.88514 -39.34592 -38.24310 -38.02078 -37.02112 -36.07411 -34.26708 -32.36283 -31.77549 -30.25695 -29.25579 -27.51551 -27.30939 -24.52734 -23.77763 -23.05605 -21.48606 -21.18499 -19.80688 -19.70849 -18.84539 -17.92078 -17.66602 -16.78280 -16.64293 -16.57064 -16.26373 -15.81934 -15.61101 -15.52685 -15.24675 -15.04748 -14.68787 -14.58717 -14.36988 -13.99174 -13.79975 -13.56223 -13.50760 -13.20629 -13.13302 -13.05352 -13.01258 -12.92356 -12.65782 -12.49287 -12.41809 -12.21323 -12.18049 -12.09718 -11.66954 -11.55246 -11.44239 -11.18183 -11.07832 -10.78412 -9.77120 -9.29157 -8.90759 -8.47722 -6.15993 -0.84147 0.60598 0.69114 1.33947 1.44566 1.50271 1.68595 2.17069 2.73033 2.81032 3.03879 3.14726 3.24630 3.50228 3.53336 3.74370 3.89851 3.94412 4.00432 4.12294 4.16319 4.23568 4.42375 4.48271 4.57643 4.61831 4.68313 4.72547 4.76744 4.81638 4.90746 4.94382 5.00328 5.06178 5.14415 5.15375 5.19927 5.28438 5.32471 5.50610 5.58855 5.71885 5.73665 6.02462 6.21575 6.27546 6.51979 6.96941 7.78492 8.75365 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.017627 B = 0.002121 C = 0.002001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.048039 B =13198.931779 C =13989.549643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.146 3.854 3 H 0.057 0.943 4 N -0.689 5.689 5 C 0.064 3.936 6 C -0.078 4.078 7 H 0.113 0.887 8 C -0.115 4.115 9 C -0.558 4.558 10 S 2.376 3.624 11 O -0.988 6.988 12 O -0.991 6.991 13 C -0.586 4.586 14 C -0.165 4.165 15 C -0.064 4.064 16 C -0.244 4.244 17 C 0.112 3.888 18 O -0.234 6.234 19 C -0.414 4.414 20 H 0.101 0.899 21 C -0.024 4.024 22 N -0.921 5.921 23 Si 1.018 2.982 24 H -0.258 1.258 25 H -0.272 1.272 26 H -0.257 1.257 27 C -0.207 4.207 28 C -0.046 4.046 29 H 0.052 0.948 30 H 0.072 0.928 31 H 0.050 0.950 32 H 0.343 0.657 33 H 0.040 0.960 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.125 0.875 37 H 0.154 0.846 38 H 0.157 0.843 39 H 0.145 0.855 40 H 0.138 0.862 41 H 0.139 0.861 42 H 0.116 0.884 43 H 0.273 0.727 44 H 0.109 0.891 45 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.795 12.757 25.267 29.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.036 3.964 3 H 0.075 0.925 4 N -0.321 5.321 5 C -0.066 4.066 6 C -0.098 4.098 7 H 0.131 0.869 8 C -0.154 4.154 9 C -0.691 4.691 10 S 2.566 3.434 11 O -0.985 6.985 12 O -0.988 6.988 13 C -0.717 4.717 14 C -0.166 4.166 15 C -0.083 4.083 16 C -0.263 4.263 17 C 0.062 3.938 18 O -0.140 6.140 19 C -0.490 4.490 20 H 0.118 0.882 21 C -0.221 4.221 22 N -0.559 5.559 23 Si 0.837 3.163 24 H -0.182 1.182 25 H -0.197 1.197 26 H -0.181 1.181 27 C -0.226 4.226 28 C -0.064 4.064 29 H 0.071 0.929 30 H 0.091 0.909 31 H 0.069 0.931 32 H 0.162 0.838 33 H 0.058 0.942 34 H 0.114 0.886 35 H 0.114 0.886 36 H 0.144 0.856 37 H 0.172 0.828 38 H 0.175 0.825 39 H 0.163 0.837 40 H 0.157 0.843 41 H 0.156 0.844 42 H 0.134 0.866 43 H 0.082 0.918 44 H 0.127 0.873 45 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -7.343 11.864 25.558 29.119 hybrid contribution 0.722 0.462 -1.778 1.974 sum -6.622 12.326 23.780 27.591 Atomic orbital electron populations 1.21748 0.93359 1.02101 1.01574 1.20170 0.95915 0.94693 0.85593 0.92541 1.60622 1.33768 1.33382 1.04318 1.22120 1.02080 0.93308 0.89045 1.21674 0.91873 1.00874 0.95347 0.86900 1.22357 1.04311 0.98793 0.89984 1.30424 1.16000 1.12792 1.09895 1.09165 0.79247 0.74057 0.80908 1.93556 1.56935 1.61266 1.86784 1.93552 1.85130 1.38834 1.81317 1.30560 1.08416 1.12210 1.20533 1.19808 1.06364 0.93446 0.96997 1.20950 0.95696 0.99949 0.91671 1.21222 1.10344 0.93459 1.01272 1.19981 0.92939 0.92513 0.88348 1.83946 1.73700 1.36786 1.19613 1.21768 1.47755 0.91408 0.88056 0.88157 1.26592 0.96427 0.97777 1.01317 1.70176 1.46801 1.10931 1.28038 0.84658 0.79524 0.77080 0.75024 1.18190 1.19662 1.18119 1.20502 1.08685 0.99466 0.93978 1.20789 0.95588 0.94218 0.95778 0.92907 0.90917 0.93090 0.83823 0.94229 0.88600 0.88588 0.85640 0.82789 0.82464 0.83654 0.84340 0.84364 0.86578 0.91847 0.87259 0.83416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.29 9.39 71.98 0.68 -1.62 16 2 C 0.15 2.80 2.82 44.17 0.12 2.92 16 3 H 0.06 0.99 7.66 -2.39 -0.02 0.97 16 4 N -0.69 -10.68 5.69 -495.44 -2.82 -13.50 16 5 C 0.06 0.59 4.84 86.30 0.42 1.01 16 6 C -0.08 -0.50 2.81 -10.11 -0.03 -0.53 16 7 H 0.11 0.61 8.14 -2.39 -0.02 0.59 16 8 C -0.12 -0.27 5.80 31.59 0.18 -0.09 16 9 C -0.56 -2.21 7.31 72.68 0.53 -1.68 16 10 S 2.38 32.48 6.10 -56.49 -0.34 32.14 16 11 O -0.99 -22.10 18.15 -127.47 -2.31 -24.42 16 12 O -0.99 -22.68 18.15 -127.47 -2.31 -24.99 16 13 C -0.59 -5.86 5.83 72.38 0.42 -5.44 16 14 C -0.17 -4.66 4.72 -19.83 -0.09 -4.76 16 15 C -0.06 -2.08 9.66 22.25 0.21 -1.87 16 16 C -0.24 -10.37 9.17 22.39 0.21 -10.17 16 17 C 0.11 5.55 6.65 22.58 0.15 5.70 16 18 O -0.23 -14.12 9.76 -22.86 -0.22 -14.34 16 19 C -0.41 -24.15 9.49 67.92 0.64 -23.50 16 20 H 0.10 5.35 5.20 -2.91 -0.02 5.34 16 21 C -0.02 -1.35 5.49 84.83 0.47 -0.89 16 22 N -0.92 -56.89 13.67 21.61 0.30 -56.59 16 23 Si 1.02 42.87 29.55 68.60 2.03 44.90 16 24 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 25 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 26 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 27 C -0.21 -8.67 9.99 22.39 0.22 -8.44 16 28 C -0.05 -1.45 9.00 22.25 0.20 -1.25 16 29 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.07 0.94 7.45 -2.38 -0.02 0.92 16 31 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.34 5.91 7.11 -89.69 -0.64 5.27 16 33 H 0.04 0.36 7.94 -2.39 -0.02 0.34 16 34 H 0.10 0.65 7.44 -2.39 -0.02 0.63 16 35 H 0.10 0.14 8.11 -2.39 -0.02 0.12 16 36 H 0.13 -0.18 8.14 -2.38 -0.02 -0.19 16 37 H 0.15 0.22 8.14 -2.39 -0.02 0.20 16 38 H 0.16 0.14 8.14 -2.39 -0.02 0.13 16 39 H 0.15 1.47 8.14 -2.39 -0.02 1.45 16 40 H 0.14 1.37 7.81 -2.39 -0.02 1.35 16 41 H 0.14 3.55 8.03 -2.91 -0.02 3.53 16 42 H 0.12 5.07 5.64 -2.91 -0.02 5.06 16 43 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 44 H 0.11 4.61 8.06 -2.91 -0.02 4.59 16 45 H 0.15 3.87 7.71 -2.91 -0.02 3.85 16 Total: -1.00 -84.85 378.81 -0.99 -85.84 By element: Atomic # 1 Polarization: 21.18 SS G_CDS: 0.37 Total: 21.54 kcal Atomic # 6 Polarization: -54.92 SS G_CDS: 4.34 Total: -50.58 kcal Atomic # 7 Polarization: -67.56 SS G_CDS: -2.52 Total: -70.09 kcal Atomic # 8 Polarization: -58.90 SS G_CDS: -4.85 Total: -63.75 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.90 kcal Atomic # 16 Polarization: 32.48 SS G_CDS: -0.34 Total: 32.14 kcal Total: -84.85 -0.99 -85.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038083355.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.239 kcal (2) G-P(sol) polarization free energy of solvation -84.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds