Wall clock time and date at job start Tue Mar 31 2020 23:53:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08998 * 109.47058 * 2 1 4 4 N 1.46910 * 109.47031 * 240.00215 * 2 1 3 5 5 C 1.46904 * 110.99451 * 84.99789 * 4 2 1 6 6 C 1.53005 * 109.46833 * 179.97438 * 5 4 2 7 7 H 1.09004 * 110.04652 * 53.59561 * 6 5 4 8 8 C 1.53878 * 110.02779 * 174.99861 * 6 5 4 9 9 C 1.54164 * 108.70224 * 166.47254 * 8 6 5 10 10 S 1.82915 * 105.08783 * 332.09482 * 9 8 6 11 11 O 1.42103 * 109.35438 * 115.52215 * 10 9 8 12 12 O 1.42103 * 109.35538 * 248.58975 * 10 9 8 13 13 C 1.55049 * 110.02888 * 292.19421 * 6 5 4 14 14 C 1.50693 * 109.47321 * 120.00463 * 2 1 3 15 15 C 1.38302 * 119.93194 * 79.72800 * 14 2 1 16 16 C 1.38105 * 120.07075 * 179.72502 * 15 14 2 17 17 C 1.38880 * 119.92554 * 0.54596 * 16 15 14 18 18 O 1.35751 * 120.06511 * 179.74869 * 17 16 15 19 19 C 1.34829 * 116.99777 * 174.44325 * 18 17 16 20 20 H 1.07998 * 120.00003 * 5.06041 * 19 18 17 21 21 C 1.38656 * 119.99897 * 185.05570 * 19 18 17 22 22 N 1.31555 * 119.99966 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 119.99921 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47437 * 89.99838 * 23 21 19 25 25 H 1.48498 * 109.46817 * 209.99995 * 23 21 19 26 26 H 1.48505 * 109.46957 * 329.99429 * 23 21 19 27 27 C 1.38877 * 119.86272 * 359.72754 * 17 16 15 28 28 C 1.38094 * 119.93193 * 359.97438 * 27 17 16 29 29 H 1.09001 * 109.47207 * 299.99803 * 1 2 3 30 30 H 1.09006 * 109.47766 * 59.99955 * 1 2 3 31 31 H 1.09006 * 109.46992 * 179.97438 * 1 2 3 32 32 H 1.00898 * 110.99800 * 321.05248 * 4 2 1 33 33 H 1.09000 * 109.47252 * 60.00487 * 5 4 2 34 34 H 1.09000 * 109.47483 * 299.99582 * 5 4 2 35 35 H 1.08994 * 109.64700 * 286.32939 * 8 6 5 36 36 H 1.09000 * 109.64326 * 46.62370 * 8 6 5 37 37 H 1.09002 * 110.31711 * 90.99388 * 9 8 6 38 38 H 1.08999 * 110.31929 * 213.18718 * 9 8 6 39 39 H 1.08992 * 110.78647 * 316.54227 * 13 6 5 40 40 H 1.09000 * 110.78811 * 80.00644 * 13 6 5 41 41 H 1.08004 * 119.96798 * 359.97438 * 15 14 2 42 42 H 1.07993 * 120.03711 * 180.27089 * 16 15 14 43 43 H 0.97004 * 120.00046 * 179.97438 * 22 21 19 44 44 H 1.08004 * 120.03394 * 180.02562 * 27 17 16 45 45 H 1.08004 * 119.96516 * 179.97438 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0196 -0.6925 -1.1995 5 6 2.0823 0.2227 -2.3469 6 6 2.5961 -0.5326 -3.5743 7 1 1.9922 -1.4241 -3.7442 8 6 2.5489 0.3798 -4.8125 9 6 3.3744 -0.2729 -5.9392 10 16 4.6381 -1.2795 -5.0817 11 8 4.4235 -2.6535 -5.3739 12 8 5.9203 -0.7035 -5.2903 13 6 4.0814 -0.9282 -3.3711 14 6 2.0323 -0.7105 1.2303 15 6 2.0608 -2.0927 1.2657 16 6 2.5260 -2.7467 2.3896 17 6 2.9547 -2.0149 3.4894 18 8 3.4077 -2.6550 4.5975 19 6 3.9155 -1.8876 5.5830 20 1 3.8738 -0.8112 5.5051 21 6 4.4911 -2.4803 6.6965 22 7 4.5413 -3.7914 6.7916 23 14 5.1940 -1.4171 8.0621 24 1 4.1361 -1.1374 9.0660 25 1 6.3202 -2.1312 8.7155 26 1 5.6846 -0.1373 7.4903 27 6 2.9195 -0.6271 3.4528 28 6 2.4591 0.0210 2.3237 29 1 -0.3634 0.5138 0.8900 30 1 -0.3635 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.4494 -1.4978 -1.4102 33 1 2.7587 1.0463 -2.1182 34 1 1.0869 0.6164 -2.5526 35 1 1.5161 0.5020 -5.1385 36 1 2.9711 1.3540 -4.5661 37 1 2.7381 -0.9085 -6.5550 38 1 3.8515 0.4927 -6.5510 39 1 4.6469 -0.1010 -2.9424 40 1 4.1628 -1.8184 -2.7473 41 1 1.7228 -2.6613 0.4119 42 1 2.5521 -3.8261 2.4150 43 1 4.9444 -4.2061 7.5704 44 1 3.2526 -0.0553 4.3064 45 1 2.4310 1.1003 2.2949 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000038083356.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:53:31 Heat of formation + Delta-G solvation = -76.457227 kcal Electronic energy + Delta-G solvation = -26518.873147 eV Core-core repulsion = 22629.108047 eV Total energy + Delta-G solvation = -3889.765100 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 2.65 seconds Orbital eigenvalues (eV) -39.28232 -38.33280 -37.28624 -37.00552 -36.24290 -35.16550 -32.32006 -31.49302 -30.19664 -29.52289 -27.92027 -26.66127 -25.39477 -23.86189 -22.57261 -21.79224 -21.09645 -19.99396 -19.10859 -17.92592 -17.20559 -17.06018 -16.75739 -16.08331 -15.74688 -15.16920 -15.12014 -14.67177 -14.52037 -14.44747 -13.96550 -13.81868 -13.62436 -13.54989 -13.03808 -12.91405 -12.71319 -12.59794 -12.45805 -12.40936 -12.28659 -12.24553 -12.14792 -11.79123 -11.65921 -11.40749 -11.30436 -11.17393 -10.99356 -10.69106 -10.64937 -10.54808 -10.42183 -10.39385 -9.31452 -8.81744 -8.47672 -8.14481 -7.13920 -6.43601 -4.02470 -0.24391 2.24164 2.24679 2.33606 3.12856 3.14175 3.18900 3.28276 3.64180 3.76239 3.97638 4.06562 4.15819 4.38403 4.46402 4.50132 4.62407 4.85785 4.97452 5.08033 5.11377 5.13939 5.17944 5.24682 5.27654 5.32895 5.34107 5.38090 5.59729 5.64720 5.68506 5.74496 5.80936 5.93682 6.09086 6.23815 6.42941 6.72313 6.81540 6.97353 7.08764 7.27695 7.30836 7.42410 7.46815 7.85007 8.01485 9.02174 9.73116 10.74570 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.016283 B = 0.002162 C = 0.002024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1719.120082 B =12946.851427 C =13829.080788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.142 3.858 3 H 0.076 0.924 4 N -0.679 5.679 5 C 0.073 3.927 6 C -0.088 4.088 7 H 0.095 0.905 8 C -0.110 4.110 9 C -0.596 4.596 10 S 2.378 3.622 11 O -0.939 6.939 12 O -0.943 6.943 13 C -0.562 4.562 14 C -0.169 4.169 15 C -0.053 4.053 16 C -0.194 4.194 17 C 0.153 3.847 18 O -0.179 6.179 19 C -0.391 4.391 20 H 0.091 0.909 21 C 0.039 3.961 22 N -0.863 5.863 23 Si 0.940 3.060 24 H -0.274 1.274 25 H -0.277 1.277 26 H -0.268 1.268 27 C -0.233 4.233 28 C -0.068 4.068 29 H 0.063 0.937 30 H 0.046 0.954 31 H 0.058 0.942 32 H 0.340 0.660 33 H 0.078 0.922 34 H 0.036 0.964 35 H 0.091 0.909 36 H 0.086 0.914 37 H 0.134 0.866 38 H 0.136 0.864 39 H 0.139 0.861 40 H 0.147 0.853 41 H 0.108 0.892 42 H 0.115 0.885 43 H 0.270 0.730 44 H 0.125 0.875 45 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.272 10.509 -22.725 26.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.033 3.967 3 H 0.094 0.906 4 N -0.309 5.309 5 C -0.057 4.057 6 C -0.109 4.109 7 H 0.113 0.887 8 C -0.149 4.149 9 C -0.725 4.725 10 S 2.563 3.437 11 O -0.937 6.937 12 O -0.940 6.940 13 C -0.693 4.693 14 C -0.170 4.170 15 C -0.072 4.072 16 C -0.214 4.214 17 C 0.100 3.900 18 O -0.083 6.083 19 C -0.468 4.468 20 H 0.109 0.891 21 C -0.166 4.166 22 N -0.498 5.498 23 Si 0.765 3.235 24 H -0.199 1.199 25 H -0.203 1.203 26 H -0.192 1.192 27 C -0.253 4.253 28 C -0.087 4.087 29 H 0.082 0.918 30 H 0.065 0.935 31 H 0.077 0.923 32 H 0.159 0.841 33 H 0.097 0.903 34 H 0.054 0.946 35 H 0.109 0.891 36 H 0.105 0.895 37 H 0.153 0.847 38 H 0.154 0.846 39 H 0.158 0.842 40 H 0.165 0.835 41 H 0.126 0.874 42 H 0.133 0.867 43 H 0.079 0.921 44 H 0.143 0.857 45 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -5.734 9.613 -22.709 25.317 hybrid contribution -1.225 1.148 0.794 1.857 sum -6.959 10.761 -21.915 25.387 Atomic orbital electron populations 1.22501 0.97234 1.02221 1.01563 1.20175 0.91789 0.96704 0.88021 0.90607 1.60589 1.58025 1.09337 1.02994 1.21881 0.99408 0.95365 0.89084 1.21890 0.93894 0.99851 0.95231 0.88697 1.21931 1.02100 0.99687 0.91156 1.30500 1.17011 1.15071 1.09879 1.09355 0.77136 0.76531 0.80686 1.93626 1.86632 1.30219 1.83175 1.93614 1.36441 1.79430 1.84531 1.30598 1.04907 1.12950 1.20838 1.19030 1.09412 0.93521 0.95040 1.20300 0.97643 0.93368 0.95889 1.20214 1.08803 0.99343 0.92999 1.19393 0.92102 0.90921 0.87604 1.83980 1.67397 1.35050 1.21866 1.21308 1.37965 0.90665 0.96818 0.89140 1.25282 0.96784 0.96305 0.98183 1.70039 1.41756 1.08719 1.29331 0.85724 0.78670 0.79103 0.79986 1.19931 1.20260 1.19228 1.21104 1.09690 0.94418 1.00046 1.20526 0.97298 0.98018 0.92815 0.91800 0.93451 0.92305 0.84117 0.90313 0.94594 0.89065 0.89517 0.84737 0.84578 0.84236 0.83472 0.87387 0.86730 0.92051 0.85715 0.87880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 40. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.73 9.14 37.15 0.34 -1.40 16 2 C 0.14 1.61 2.79 -68.87 -0.19 1.42 16 3 H 0.08 0.83 7.66 -51.93 -0.40 0.43 16 4 N -0.68 -6.45 5.53 -107.95 -0.60 -7.05 16 5 C 0.07 0.49 4.89 -3.82 -0.02 0.47 16 6 C -0.09 -0.47 2.75 -89.08 -0.25 -0.72 16 7 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 8 C -0.11 -0.39 5.75 -25.67 -0.15 -0.54 16 9 C -0.60 -2.41 7.26 37.77 0.27 -2.13 16 10 S 2.38 18.21 6.10 -107.50 -0.66 17.55 16 11 O -0.94 -10.91 18.15 -57.73 -1.05 -11.95 16 12 O -0.94 -10.97 18.15 -57.73 -1.05 -12.02 16 13 C -0.56 -3.76 6.51 38.24 0.25 -3.51 16 14 C -0.17 -2.65 4.96 -104.58 -0.52 -3.17 16 15 C -0.05 -0.90 9.31 -39.61 -0.37 -1.27 16 16 C -0.19 -4.04 9.99 -39.39 -0.39 -4.44 16 17 C 0.15 3.68 6.65 -39.11 -0.26 3.42 16 18 O -0.18 -5.13 9.76 0.05 0.00 -5.12 16 19 C -0.39 -10.94 9.49 30.89 0.29 -10.65 16 20 H 0.09 2.34 5.20 -52.49 -0.27 2.07 16 21 C 0.04 1.06 5.49 -17.52 -0.10 0.97 16 22 N -0.86 -25.42 13.67 55.48 0.76 -24.66 16 23 Si 0.94 20.55 29.55 -169.99 -5.02 15.52 16 24 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 25 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 26 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 27 C -0.23 -4.98 9.17 -39.40 -0.36 -5.34 16 28 C -0.07 -1.19 9.66 -39.61 -0.38 -1.57 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.05 0.38 7.45 -51.93 -0.39 -0.01 16 31 H 0.06 0.59 8.13 -51.93 -0.42 0.17 16 32 H 0.34 2.93 7.82 -39.29 -0.31 2.63 16 33 H 0.08 0.54 8.00 -51.93 -0.42 0.12 16 34 H 0.04 0.20 7.44 -51.93 -0.39 -0.18 16 35 H 0.09 0.23 8.14 -51.93 -0.42 -0.20 16 36 H 0.09 0.24 8.10 -51.93 -0.42 -0.18 16 37 H 0.13 0.41 8.14 -51.93 -0.42 -0.02 16 38 H 0.14 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.14 0.86 8.06 -51.93 -0.42 0.44 16 40 H 0.15 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.11 1.52 7.25 -52.48 -0.38 1.14 16 42 H 0.11 2.33 8.06 -52.49 -0.42 1.91 16 43 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 44 H 0.13 2.69 5.64 -52.48 -0.30 2.39 16 45 H 0.10 1.53 8.03 -52.48 -0.42 1.11 16 LS Contribution 380.03 15.07 5.73 5.73 Total: -1.00 -36.61 380.03 -10.33 -46.94 By element: Atomic # 1 Polarization: 10.14 SS G_CDS: -6.62 Total: 3.52 kcal Atomic # 6 Polarization: -26.63 SS G_CDS: -1.83 Total: -28.46 kcal Atomic # 7 Polarization: -31.87 SS G_CDS: 0.16 Total: -31.71 kcal Atomic # 8 Polarization: -27.00 SS G_CDS: -2.09 Total: -29.10 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.52 kcal Atomic # 16 Polarization: 18.21 SS G_CDS: -0.66 Total: 17.55 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -36.61 -10.33 -46.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038083356.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.517 kcal (2) G-P(sol) polarization free energy of solvation -36.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.65 seconds