Wall clock time and date at job start Tue Mar 31 2020 23:53:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08998 * 109.47058 * 2 1 4 4 N 1.46910 * 109.47031 * 240.00215 * 2 1 3 5 5 C 1.46904 * 110.99451 * 84.99789 * 4 2 1 6 6 C 1.53005 * 109.46833 * 179.97438 * 5 4 2 7 7 H 1.09004 * 110.04652 * 53.59561 * 6 5 4 8 8 C 1.53878 * 110.02779 * 174.99861 * 6 5 4 9 9 C 1.54164 * 108.70224 * 166.47254 * 8 6 5 10 10 S 1.82915 * 105.08783 * 332.09482 * 9 8 6 11 11 O 1.42103 * 109.35438 * 115.52215 * 10 9 8 12 12 O 1.42103 * 109.35538 * 248.58975 * 10 9 8 13 13 C 1.55049 * 110.02888 * 292.19421 * 6 5 4 14 14 C 1.50693 * 109.47321 * 120.00463 * 2 1 3 15 15 C 1.38302 * 119.93194 * 79.72800 * 14 2 1 16 16 C 1.38105 * 120.07075 * 179.72502 * 15 14 2 17 17 C 1.38880 * 119.92554 * 0.54596 * 16 15 14 18 18 O 1.35751 * 120.06511 * 179.74869 * 17 16 15 19 19 C 1.34829 * 116.99777 * 174.44325 * 18 17 16 20 20 H 1.07998 * 120.00003 * 5.06041 * 19 18 17 21 21 C 1.38656 * 119.99897 * 185.05570 * 19 18 17 22 22 N 1.31555 * 119.99966 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 119.99921 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47437 * 89.99838 * 23 21 19 25 25 H 1.48498 * 109.46817 * 209.99995 * 23 21 19 26 26 H 1.48505 * 109.46957 * 329.99429 * 23 21 19 27 27 C 1.38877 * 119.86272 * 359.72754 * 17 16 15 28 28 C 1.38094 * 119.93193 * 359.97438 * 27 17 16 29 29 H 1.09001 * 109.47207 * 299.99803 * 1 2 3 30 30 H 1.09006 * 109.47766 * 59.99955 * 1 2 3 31 31 H 1.09006 * 109.46992 * 179.97438 * 1 2 3 32 32 H 1.00898 * 110.99800 * 321.05248 * 4 2 1 33 33 H 1.09000 * 109.47252 * 60.00487 * 5 4 2 34 34 H 1.09000 * 109.47483 * 299.99582 * 5 4 2 35 35 H 1.08994 * 109.64700 * 286.32939 * 8 6 5 36 36 H 1.09000 * 109.64326 * 46.62370 * 8 6 5 37 37 H 1.09002 * 110.31711 * 90.99388 * 9 8 6 38 38 H 1.08999 * 110.31929 * 213.18718 * 9 8 6 39 39 H 1.08992 * 110.78647 * 316.54227 * 13 6 5 40 40 H 1.09000 * 110.78811 * 80.00644 * 13 6 5 41 41 H 1.08004 * 119.96798 * 359.97438 * 15 14 2 42 42 H 1.07993 * 120.03711 * 180.27089 * 16 15 14 43 43 H 0.97004 * 120.00046 * 179.97438 * 22 21 19 44 44 H 1.08004 * 120.03394 * 180.02562 * 27 17 16 45 45 H 1.08004 * 119.96516 * 179.97438 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0196 -0.6925 -1.1995 5 6 2.0823 0.2227 -2.3469 6 6 2.5961 -0.5326 -3.5743 7 1 1.9922 -1.4241 -3.7442 8 6 2.5489 0.3798 -4.8125 9 6 3.3744 -0.2729 -5.9392 10 16 4.6381 -1.2795 -5.0817 11 8 4.4235 -2.6535 -5.3739 12 8 5.9203 -0.7035 -5.2903 13 6 4.0814 -0.9282 -3.3711 14 6 2.0323 -0.7105 1.2303 15 6 2.0608 -2.0927 1.2657 16 6 2.5260 -2.7467 2.3896 17 6 2.9547 -2.0149 3.4894 18 8 3.4077 -2.6550 4.5975 19 6 3.9155 -1.8876 5.5830 20 1 3.8738 -0.8112 5.5051 21 6 4.4911 -2.4803 6.6965 22 7 4.5413 -3.7914 6.7916 23 14 5.1940 -1.4171 8.0621 24 1 4.1361 -1.1374 9.0660 25 1 6.3202 -2.1312 8.7155 26 1 5.6846 -0.1373 7.4903 27 6 2.9195 -0.6271 3.4528 28 6 2.4591 0.0210 2.3237 29 1 -0.3634 0.5138 0.8900 30 1 -0.3635 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.4494 -1.4978 -1.4102 33 1 2.7587 1.0463 -2.1182 34 1 1.0869 0.6164 -2.5526 35 1 1.5161 0.5020 -5.1385 36 1 2.9711 1.3540 -4.5661 37 1 2.7381 -0.9085 -6.5550 38 1 3.8515 0.4927 -6.5510 39 1 4.6469 -0.1010 -2.9424 40 1 4.1628 -1.8184 -2.7473 41 1 1.7228 -2.6613 0.4119 42 1 2.5521 -3.8261 2.4150 43 1 4.9444 -4.2061 7.5704 44 1 3.2526 -0.0553 4.3064 45 1 2.4310 1.1003 2.2949 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000038083356.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:53:30 Heat of formation + Delta-G solvation = -104.403609 kcal Electronic energy + Delta-G solvation = -26520.084993 eV Core-core repulsion = 22629.108047 eV Total energy + Delta-G solvation = -3890.976946 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.81544 -39.29352 -38.18852 -37.98433 -36.99122 -36.18698 -34.24948 -32.30249 -31.72492 -30.29960 -29.14625 -27.34230 -27.20969 -24.48237 -23.88054 -23.13441 -21.72326 -21.16893 -19.75467 -19.70422 -18.79708 -17.69938 -17.50905 -16.87390 -16.57970 -16.44712 -16.13422 -15.88825 -15.60412 -15.46856 -15.29805 -14.99784 -14.79704 -14.40732 -14.29381 -13.97475 -13.95084 -13.50088 -13.47142 -13.26538 -13.17396 -13.05631 -13.01681 -12.84443 -12.56122 -12.55155 -12.42156 -12.14536 -12.13528 -12.02308 -11.75302 -11.59955 -11.42585 -11.12407 -11.04567 -10.76663 -9.70949 -9.18361 -8.80973 -8.45734 -6.13568 -0.80462 0.66603 0.78041 1.34497 1.44214 1.52272 1.72664 2.18485 2.75991 2.84563 3.10077 3.13821 3.28098 3.57671 3.59641 3.76325 3.95313 4.04576 4.08397 4.12743 4.17775 4.24138 4.39256 4.45559 4.51194 4.65561 4.67893 4.76440 4.77818 4.83686 4.91768 4.94364 5.00923 5.04252 5.16104 5.18615 5.21530 5.29768 5.34717 5.37415 5.65196 5.76703 5.84349 6.05748 6.25349 6.33707 6.62412 6.99286 7.82572 8.77931 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.016283 B = 0.002162 C = 0.002024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1719.120082 B =12946.851427 C =13829.080788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.147 3.853 3 H 0.090 0.910 4 N -0.695 5.695 5 C 0.073 3.927 6 C -0.087 4.087 7 H 0.104 0.896 8 C -0.108 4.108 9 C -0.564 4.564 10 S 2.367 3.633 11 O -0.990 6.990 12 O -0.994 6.994 13 C -0.557 4.557 14 C -0.139 4.139 15 C -0.047 4.047 16 C -0.209 4.209 17 C 0.107 3.893 18 O -0.237 6.237 19 C -0.411 4.411 20 H 0.101 0.899 21 C -0.026 4.026 22 N -0.923 5.923 23 Si 1.019 2.981 24 H -0.262 1.262 25 H -0.272 1.272 26 H -0.253 1.253 27 C -0.243 4.243 28 C -0.069 4.069 29 H 0.055 0.945 30 H 0.076 0.924 31 H 0.055 0.945 32 H 0.347 0.653 33 H 0.081 0.919 34 H 0.060 0.940 35 H 0.117 0.883 36 H 0.101 0.899 37 H 0.152 0.848 38 H 0.155 0.845 39 H 0.144 0.856 40 H 0.134 0.866 41 H 0.143 0.857 42 H 0.106 0.894 43 H 0.272 0.728 44 H 0.114 0.886 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.541 14.181 -25.546 30.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.037 3.963 3 H 0.108 0.892 4 N -0.326 5.326 5 C -0.057 4.057 6 C -0.108 4.108 7 H 0.122 0.878 8 C -0.147 4.147 9 C -0.697 4.697 10 S 2.558 3.442 11 O -0.987 6.987 12 O -0.991 6.991 13 C -0.689 4.689 14 C -0.140 4.140 15 C -0.065 4.065 16 C -0.228 4.228 17 C 0.057 3.943 18 O -0.144 6.144 19 C -0.487 4.487 20 H 0.118 0.882 21 C -0.223 4.223 22 N -0.562 5.562 23 Si 0.838 3.162 24 H -0.187 1.187 25 H -0.197 1.197 26 H -0.177 1.177 27 C -0.263 4.263 28 C -0.088 4.088 29 H 0.074 0.926 30 H 0.095 0.905 31 H 0.074 0.926 32 H 0.166 0.834 33 H 0.099 0.901 34 H 0.078 0.922 35 H 0.136 0.864 36 H 0.120 0.880 37 H 0.170 0.830 38 H 0.173 0.827 39 H 0.162 0.838 40 H 0.152 0.848 41 H 0.161 0.839 42 H 0.124 0.876 43 H 0.081 0.919 44 H 0.132 0.868 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -7.994 13.285 -25.592 29.923 hybrid contribution -0.728 0.136 1.289 1.486 sum -8.722 13.420 -24.304 29.101 Atomic orbital electron populations 1.22436 0.95490 1.02436 1.02659 1.20131 0.92896 0.96669 0.86585 0.89162 1.60463 1.58330 1.10243 1.03564 1.21956 1.00844 0.94829 0.88036 1.21973 0.92288 1.00723 0.95788 0.87756 1.22030 1.03494 0.99576 0.89620 1.30271 1.14938 1.14474 1.09980 1.09364 0.77384 0.75902 0.81500 1.93554 1.87330 1.33681 1.84176 1.93542 1.40284 1.79792 1.85507 1.30499 1.06573 1.12605 1.19241 1.19711 1.04965 0.93164 0.96208 1.20689 0.96119 0.94404 0.95270 1.20480 1.09353 0.99304 0.93685 1.19952 0.94002 0.92559 0.87751 1.83939 1.70297 1.36545 1.23651 1.21800 1.38238 0.91333 0.97376 0.88221 1.26597 0.97020 0.97823 1.00832 1.70191 1.44313 1.11006 1.30697 0.84590 0.78001 0.77403 0.76226 1.18716 1.19678 1.17678 1.21212 1.10291 0.93417 1.01339 1.20934 0.96107 0.99969 0.91747 0.92622 0.90538 0.92594 0.83398 0.90106 0.92172 0.86448 0.88034 0.82954 0.82727 0.83752 0.84750 0.83925 0.87597 0.91933 0.86773 0.84297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.49 9.14 71.98 0.66 -1.83 16 2 C 0.15 2.60 2.79 44.16 0.12 2.73 16 3 H 0.09 1.45 7.66 -2.39 -0.02 1.43 16 4 N -0.69 -9.96 5.53 -495.43 -2.74 -12.70 16 5 C 0.07 0.58 4.89 86.30 0.42 1.00 16 6 C -0.09 -0.55 2.75 -9.79 -0.03 -0.58 16 7 H 0.10 0.51 8.14 -2.38 -0.02 0.49 16 8 C -0.11 -0.18 5.75 31.28 0.18 0.00 16 9 C -0.56 -2.35 7.26 72.38 0.53 -1.83 16 10 S 2.37 34.66 6.10 -56.49 -0.34 34.32 16 11 O -0.99 -23.44 18.15 -127.47 -2.31 -25.76 16 12 O -0.99 -23.59 18.15 -127.47 -2.31 -25.90 16 13 C -0.56 -6.39 6.51 72.68 0.47 -5.92 16 14 C -0.14 -3.95 4.96 -19.84 -0.10 -4.05 16 15 C -0.05 -1.50 9.31 22.25 0.21 -1.29 16 16 C -0.21 -8.97 9.99 22.39 0.22 -8.75 16 17 C 0.11 5.41 6.65 22.58 0.15 5.56 16 18 O -0.24 -14.59 9.76 -22.74 -0.22 -14.82 16 19 C -0.41 -24.39 9.49 67.92 0.64 -23.75 16 20 H 0.10 5.42 5.20 -2.91 -0.02 5.41 16 21 C -0.03 -1.49 5.49 84.83 0.47 -1.03 16 22 N -0.92 -57.80 13.67 21.61 0.30 -57.50 16 23 Si 1.02 43.53 29.55 68.60 2.03 45.56 16 24 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 25 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 26 H -0.25 -10.03 7.11 99.48 0.71 -9.33 16 27 C -0.24 -10.58 9.17 22.39 0.21 -10.38 16 28 C -0.07 -2.28 9.66 22.25 0.21 -2.06 16 29 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.08 0.73 7.45 -2.38 -0.02 0.71 16 31 H 0.05 0.87 8.13 -2.38 -0.02 0.85 16 32 H 0.35 4.32 7.82 -89.70 -0.70 3.62 16 33 H 0.08 0.66 8.00 -2.39 -0.02 0.64 16 34 H 0.06 0.26 7.44 -2.39 -0.02 0.24 16 35 H 0.12 -0.23 8.14 -2.39 -0.02 -0.25 16 36 H 0.10 -0.04 8.10 -2.39 -0.02 -0.06 16 37 H 0.15 0.24 8.14 -2.39 -0.02 0.22 16 38 H 0.15 0.24 8.14 -2.39 -0.02 0.22 16 39 H 0.14 1.51 8.06 -2.39 -0.02 1.49 16 40 H 0.13 1.92 8.14 -2.39 -0.02 1.90 16 41 H 0.14 3.58 7.25 -2.91 -0.02 3.56 16 42 H 0.11 4.59 8.06 -2.91 -0.02 4.57 16 43 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 44 H 0.11 5.10 5.64 -2.91 -0.02 5.08 16 45 H 0.14 3.58 8.03 -2.91 -0.02 3.56 16 Total: -1.00 -88.37 380.03 -0.94 -89.31 By element: Atomic # 1 Polarization: 19.36 SS G_CDS: 0.30 Total: 19.66 kcal Atomic # 6 Polarization: -56.53 SS G_CDS: 4.37 Total: -52.16 kcal Atomic # 7 Polarization: -67.76 SS G_CDS: -2.45 Total: -70.20 kcal Atomic # 8 Polarization: -61.63 SS G_CDS: -4.85 Total: -66.47 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Atomic # 16 Polarization: 34.66 SS G_CDS: -0.34 Total: 34.32 kcal Total: -88.37 -0.94 -89.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038083356.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.096 kcal (2) G-P(sol) polarization free energy of solvation -88.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds