Wall clock time and date at job start Tue Mar 31 2020 23:53:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.46955 * 2 1 4 4 N 1.46899 * 109.46966 * 119.99982 * 2 1 3 5 5 C 1.46901 * 110.99995 * 274.99816 * 4 2 1 6 6 C 1.52996 * 109.47180 * 180.02562 * 5 4 2 7 7 H 1.09000 * 109.64597 * 305.42930 * 6 5 4 8 8 C 1.53870 * 109.64595 * 65.72689 * 6 5 4 9 9 C 1.55052 * 106.62485 * 167.03400 * 8 6 5 10 10 S 1.83282 * 102.56596 * 317.56719 * 9 8 6 11 11 O 1.42108 * 109.35117 * 269.81473 * 10 9 8 12 12 O 1.42093 * 109.35934 * 136.61392 * 10 9 8 13 13 C 1.54165 * 109.64651 * 185.00202 * 6 5 4 14 14 C 1.50695 * 109.47005 * 240.00162 * 2 1 3 15 15 C 1.38302 * 119.92777 * 279.72704 * 14 2 1 16 16 C 1.38107 * 120.06701 * 179.72878 * 15 14 2 17 17 C 1.38876 * 119.93095 * 0.54508 * 16 15 14 18 18 O 1.35747 * 120.07236 * 179.74837 * 17 16 15 19 19 C 1.34824 * 117.00500 * 174.44155 * 18 17 16 20 20 H 1.08000 * 119.99632 * 5.05366 * 19 18 17 21 21 C 1.38652 * 120.00262 * 185.06005 * 19 18 17 22 22 N 1.31555 * 119.99849 * 179.97438 * 21 19 18 23 23 Si 1.86800 * 119.99912 * 359.97438 * 21 19 18 24 24 H 1.48498 * 109.47076 * 90.00228 * 23 21 19 25 25 H 1.48498 * 109.47026 * 210.00135 * 23 21 19 26 26 H 1.48501 * 109.47169 * 330.00207 * 23 21 19 27 27 C 1.38878 * 119.85988 * 359.72969 * 17 16 15 28 28 C 1.38101 * 119.93502 * 359.97438 * 27 17 16 29 29 H 1.08999 * 109.47158 * 300.00134 * 1 2 3 30 30 H 1.08998 * 109.47298 * 59.99911 * 1 2 3 31 31 H 1.08998 * 109.47254 * 179.97438 * 1 2 3 32 32 H 1.00899 * 111.00286 * 38.95047 * 4 2 1 33 33 H 1.09001 * 109.47165 * 300.00403 * 5 4 2 34 34 H 1.09001 * 109.47193 * 59.99966 * 5 4 2 35 35 H 1.09005 * 110.03057 * 286.32333 * 8 6 5 36 36 H 1.09002 * 110.03242 * 47.74362 * 8 6 5 37 37 H 1.09001 * 110.78858 * 199.29670 * 9 8 6 38 38 H 1.09004 * 110.95412 * 75.91044 * 9 8 6 39 39 H 1.09001 * 110.31999 * 331.14126 * 13 6 5 40 40 H 1.08998 * 110.32200 * 93.23760 * 13 6 5 41 41 H 1.08000 * 119.96623 * 359.97438 * 15 14 2 42 42 H 1.08004 * 120.03086 * 180.26922 * 16 15 14 43 43 H 0.97002 * 119.99661 * 179.97438 * 22 21 19 44 44 H 1.08002 * 120.03338 * 179.97438 * 27 17 16 45 45 H 1.07996 * 119.96936 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 2.0825 0.2226 2.3469 6 6 2.5962 -0.5328 3.5742 7 1 1.9774 -1.4131 3.7482 8 6 4.0541 -0.9664 3.3419 9 6 4.6073 -1.4179 4.7182 10 16 3.9551 -0.1331 5.8510 11 8 4.8914 0.9318 5.9442 12 8 3.4640 -0.7519 7.0321 13 6 2.5452 0.3888 4.8089 14 6 2.0323 -0.7104 -1.2305 15 6 2.0714 -2.0925 -1.2616 16 6 2.5259 -2.7465 -2.3899 17 6 2.9546 -2.0148 -3.4896 18 8 3.4067 -2.6547 -4.5981 19 6 3.6985 -1.8905 -5.6699 20 1 3.6473 -0.8143 -5.5957 21 6 4.0642 -2.4863 -6.8673 22 7 4.3484 -1.7406 -7.9132 23 14 4.1533 -4.3478 -6.9954 24 1 2.8333 -4.8783 -7.4211 25 1 5.1846 -4.7264 -7.9945 26 1 4.5128 -4.9183 -5.6723 27 6 2.9195 -0.6269 -3.4530 28 6 2.4582 0.0212 -2.3241 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.4495 -1.4979 1.4101 33 1 2.7588 1.0462 2.1182 34 1 1.0871 0.6164 2.5525 35 1 4.0890 -1.7958 2.6354 36 1 4.6373 -0.1274 2.9622 37 1 5.6973 -1.4152 4.7168 38 1 4.2247 -2.4022 4.9883 39 1 2.6614 1.4303 4.5090 40 1 1.6058 0.2524 5.3446 41 1 1.7424 -2.6609 -0.4043 42 1 2.5521 -3.8260 -2.4152 43 1 4.6046 -2.1574 -8.7507 44 1 3.2526 -0.0551 -4.3065 45 1 2.4302 1.1004 -2.2952 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000038083357.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:53:37 Heat of formation + Delta-G solvation = -75.247960 kcal Electronic energy + Delta-G solvation = -26468.696141 eV Core-core repulsion = 22578.983479 eV Total energy + Delta-G solvation = -3889.712662 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 3.22 seconds Orbital eigenvalues (eV) -39.43546 -38.45937 -37.40497 -37.12522 -36.35667 -35.20502 -32.41938 -31.47482 -30.35701 -29.94559 -28.16925 -26.23874 -25.34599 -24.02210 -22.56996 -22.01564 -21.04450 -20.01000 -19.21393 -17.86222 -17.36227 -17.20572 -16.98422 -16.04276 -15.73617 -15.37085 -15.26986 -14.73339 -14.51032 -14.41352 -13.96677 -13.88469 -13.74964 -13.60517 -13.17798 -12.94743 -12.76416 -12.56541 -12.51362 -12.39332 -12.38321 -12.30462 -12.17334 -12.13016 -11.84317 -11.54401 -11.27505 -11.16946 -11.05750 -10.72704 -10.69884 -10.65676 -10.50717 -10.15898 -9.40108 -8.88101 -8.56207 -8.25907 -7.30967 -6.43162 -4.09782 -0.33776 2.12030 2.13200 2.20554 3.18819 3.20452 3.24014 3.38638 3.57404 3.78309 4.05134 4.16078 4.22039 4.33455 4.36163 4.49679 4.54428 4.82662 4.87555 4.90536 5.01648 5.05787 5.09084 5.18326 5.24776 5.28223 5.36231 5.38618 5.56504 5.63305 5.67889 5.73677 5.76148 5.84526 6.04221 6.12396 6.31787 6.54611 6.70280 6.83551 7.07214 7.20378 7.26534 7.31140 7.60099 7.78569 8.02553 8.92288 9.55189 10.64556 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.021012 B = 0.002009 C = 0.001929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.233259 B =13934.082882 C =14509.461428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.140 3.860 3 H 0.078 0.922 4 N -0.679 5.679 5 C 0.067 3.933 6 C -0.080 4.080 7 H 0.092 0.908 8 C -0.108 4.108 9 C -0.587 4.587 10 S 2.385 3.615 11 O -0.939 6.939 12 O -0.944 6.944 13 C -0.591 4.591 14 C -0.160 4.160 15 C -0.055 4.055 16 C -0.194 4.194 17 C 0.159 3.841 18 O -0.219 6.219 19 C -0.389 4.389 20 H 0.106 0.894 21 C 0.062 3.938 22 N -0.880 5.880 23 Si 0.906 3.094 24 H -0.274 1.274 25 H -0.282 1.282 26 H -0.260 1.260 27 C -0.220 4.220 28 C -0.069 4.069 29 H 0.047 0.953 30 H 0.064 0.936 31 H 0.058 0.942 32 H 0.340 0.660 33 H 0.079 0.921 34 H 0.037 0.963 35 H 0.110 0.890 36 H 0.088 0.912 37 H 0.137 0.863 38 H 0.136 0.864 39 H 0.138 0.862 40 H 0.137 0.863 41 H 0.110 0.890 42 H 0.114 0.886 43 H 0.279 0.721 44 H 0.132 0.868 45 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.686 2.783 24.060 24.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.031 3.969 3 H 0.096 0.904 4 N -0.310 5.310 5 C -0.064 4.064 6 C -0.099 4.099 7 H 0.110 0.890 8 C -0.146 4.146 9 C -0.717 4.717 10 S 2.569 3.431 11 O -0.936 6.936 12 O -0.942 6.942 13 C -0.721 4.721 14 C -0.161 4.161 15 C -0.074 4.074 16 C -0.214 4.214 17 C 0.107 3.893 18 O -0.124 6.124 19 C -0.465 4.465 20 H 0.123 0.877 21 C -0.141 4.141 22 N -0.518 5.518 23 Si 0.731 3.269 24 H -0.199 1.199 25 H -0.208 1.208 26 H -0.184 1.184 27 C -0.239 4.239 28 C -0.088 4.088 29 H 0.067 0.933 30 H 0.083 0.917 31 H 0.077 0.923 32 H 0.158 0.842 33 H 0.097 0.903 34 H 0.055 0.945 35 H 0.128 0.872 36 H 0.107 0.893 37 H 0.155 0.845 38 H 0.154 0.846 39 H 0.157 0.843 40 H 0.156 0.844 41 H 0.128 0.872 42 H 0.132 0.868 43 H 0.089 0.911 44 H 0.149 0.851 45 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -4.586 2.958 24.526 25.125 hybrid contribution -1.161 -0.740 -0.882 1.635 sum -5.746 2.218 23.644 24.433 Atomic orbital electron populations 1.22494 0.97089 1.02232 1.01732 1.20202 0.91929 0.96846 0.87927 0.90413 1.60618 1.57915 1.09401 1.03050 1.22020 0.99746 0.95475 0.89116 1.21563 0.97966 0.97646 0.92771 0.88983 1.22231 0.93557 1.04214 0.94643 1.30637 1.11985 1.16669 1.12401 1.09163 0.78373 0.78054 0.77516 1.93630 1.60095 1.53191 1.86691 1.93608 1.80408 1.76681 1.43457 1.30582 1.19604 1.10106 1.11776 1.19103 1.08484 0.93535 0.95002 1.20291 0.97922 0.93389 0.95802 1.20205 1.08502 0.99201 0.93466 1.19133 0.91705 0.90954 0.87529 1.83569 1.72693 1.36662 1.19472 1.20756 1.46782 0.92141 0.86786 0.87669 1.24470 0.95718 1.00218 0.93661 1.69647 1.44320 1.36189 1.01663 0.86178 0.78244 0.83690 0.78756 1.19932 1.20807 1.18370 1.21230 1.08260 0.94335 1.00092 1.20593 0.97161 0.98345 0.92673 0.93350 0.91705 0.92315 0.84169 0.90255 0.94526 0.87190 0.89301 0.84465 0.84567 0.84342 0.84432 0.87221 0.86763 0.91069 0.85075 0.87543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 49. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.66 9.14 37.16 0.34 -1.32 16 2 C 0.14 1.49 2.79 -68.87 -0.19 1.30 16 3 H 0.08 0.82 7.66 -51.93 -0.40 0.42 16 4 N -0.68 -5.80 5.45 -107.95 -0.59 -6.39 16 5 C 0.07 0.43 4.73 -3.83 -0.02 0.41 16 6 C -0.08 -0.39 2.75 -89.56 -0.25 -0.64 16 7 H 0.09 0.35 8.14 -51.93 -0.42 -0.08 16 8 C -0.11 -0.60 5.57 -25.19 -0.14 -0.74 16 9 C -0.59 -2.79 7.31 38.24 0.28 -2.51 16 10 S 2.38 15.66 6.11 -107.50 -0.66 15.01 16 11 O -0.94 -9.88 18.15 -57.71 -1.05 -10.93 16 12 O -0.94 -9.62 18.14 -57.71 -1.05 -10.67 16 13 C -0.59 -2.51 6.75 37.77 0.25 -2.25 16 14 C -0.16 -2.34 4.96 -104.58 -0.52 -2.86 16 15 C -0.06 -0.85 9.32 -39.61 -0.37 -1.22 16 16 C -0.19 -3.66 9.99 -39.39 -0.39 -4.05 16 17 C 0.16 3.55 6.65 -39.11 -0.26 3.29 16 18 O -0.22 -5.68 8.58 0.08 0.00 -5.68 16 19 C -0.39 -10.82 9.95 30.89 0.31 -10.51 16 20 H 0.11 2.99 5.44 -52.49 -0.29 2.70 16 21 C 0.06 1.73 5.49 -17.52 -0.10 1.64 16 22 N -0.88 -25.21 13.96 55.48 0.77 -24.43 16 23 Si 0.91 21.44 28.62 -169.99 -4.86 16.58 16 24 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 25 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 26 H -0.26 -6.16 7.11 56.52 0.40 -5.76 16 27 C -0.22 -4.56 9.17 -39.39 -0.36 -4.93 16 28 C -0.07 -1.16 9.66 -39.61 -0.38 -1.55 16 29 H 0.05 0.38 7.45 -51.93 -0.39 -0.01 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.55 8.13 -51.93 -0.42 0.13 16 32 H 0.34 2.54 7.81 -39.29 -0.31 2.23 16 33 H 0.08 0.54 8.02 -51.93 -0.42 0.12 16 34 H 0.04 0.22 7.44 -51.93 -0.39 -0.17 16 35 H 0.11 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.09 0.52 8.09 -51.93 -0.42 0.10 16 37 H 0.14 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.14 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.14 0.49 7.89 -51.93 -0.41 0.08 16 40 H 0.14 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.11 1.36 7.23 -52.49 -0.38 0.98 16 42 H 0.11 2.03 8.06 -52.48 -0.42 1.60 16 43 H 0.28 7.39 8.31 -40.82 -0.34 7.05 16 44 H 0.13 2.90 5.64 -52.49 -0.30 2.60 16 45 H 0.11 1.54 8.03 -52.49 -0.42 1.12 16 LS Contribution 378.59 15.07 5.71 5.71 Total: -1.00 -34.80 378.59 -10.14 -44.95 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: -6.62 Total: 1.79 kcal Atomic # 6 Polarization: -24.14 SS G_CDS: -1.80 Total: -25.94 kcal Atomic # 7 Polarization: -31.00 SS G_CDS: 0.19 Total: -30.82 kcal Atomic # 8 Polarization: -25.18 SS G_CDS: -2.09 Total: -27.27 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.86 Total: 16.58 kcal Atomic # 16 Polarization: 15.66 SS G_CDS: -0.66 Total: 15.01 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -34.80 -10.14 -44.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038083357.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.303 kcal (2) G-P(sol) polarization free energy of solvation -34.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.22 seconds