Wall clock time and date at job start Tue Mar 31 2020 23:53:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.46955 * 2 1 4 4 N 1.46899 * 109.46966 * 119.99982 * 2 1 3 5 5 C 1.46901 * 110.99995 * 274.99816 * 4 2 1 6 6 C 1.52996 * 109.47180 * 180.02562 * 5 4 2 7 7 H 1.09000 * 109.64597 * 305.42930 * 6 5 4 8 8 C 1.53870 * 109.64595 * 65.72689 * 6 5 4 9 9 C 1.55052 * 106.62485 * 167.03400 * 8 6 5 10 10 S 1.83282 * 102.56596 * 317.56719 * 9 8 6 11 11 O 1.42108 * 109.35117 * 269.81473 * 10 9 8 12 12 O 1.42093 * 109.35934 * 136.61392 * 10 9 8 13 13 C 1.54165 * 109.64651 * 185.00202 * 6 5 4 14 14 C 1.50695 * 109.47005 * 240.00162 * 2 1 3 15 15 C 1.38302 * 119.92777 * 279.72704 * 14 2 1 16 16 C 1.38107 * 120.06701 * 179.72878 * 15 14 2 17 17 C 1.38876 * 119.93095 * 0.54508 * 16 15 14 18 18 O 1.35747 * 120.07236 * 179.74837 * 17 16 15 19 19 C 1.34824 * 117.00500 * 174.44155 * 18 17 16 20 20 H 1.08000 * 119.99632 * 5.05366 * 19 18 17 21 21 C 1.38652 * 120.00262 * 185.06005 * 19 18 17 22 22 N 1.31555 * 119.99849 * 179.97438 * 21 19 18 23 23 Si 1.86800 * 119.99912 * 359.97438 * 21 19 18 24 24 H 1.48498 * 109.47076 * 90.00228 * 23 21 19 25 25 H 1.48498 * 109.47026 * 210.00135 * 23 21 19 26 26 H 1.48501 * 109.47169 * 330.00207 * 23 21 19 27 27 C 1.38878 * 119.85988 * 359.72969 * 17 16 15 28 28 C 1.38101 * 119.93502 * 359.97438 * 27 17 16 29 29 H 1.08999 * 109.47158 * 300.00134 * 1 2 3 30 30 H 1.08998 * 109.47298 * 59.99911 * 1 2 3 31 31 H 1.08998 * 109.47254 * 179.97438 * 1 2 3 32 32 H 1.00899 * 111.00286 * 38.95047 * 4 2 1 33 33 H 1.09001 * 109.47165 * 300.00403 * 5 4 2 34 34 H 1.09001 * 109.47193 * 59.99966 * 5 4 2 35 35 H 1.09005 * 110.03057 * 286.32333 * 8 6 5 36 36 H 1.09002 * 110.03242 * 47.74362 * 8 6 5 37 37 H 1.09001 * 110.78858 * 199.29670 * 9 8 6 38 38 H 1.09004 * 110.95412 * 75.91044 * 9 8 6 39 39 H 1.09001 * 110.31999 * 331.14126 * 13 6 5 40 40 H 1.08998 * 110.32200 * 93.23760 * 13 6 5 41 41 H 1.08000 * 119.96623 * 359.97438 * 15 14 2 42 42 H 1.08004 * 120.03086 * 180.26922 * 16 15 14 43 43 H 0.97002 * 119.99661 * 179.97438 * 22 21 19 44 44 H 1.08002 * 120.03338 * 179.97438 * 27 17 16 45 45 H 1.07996 * 119.96936 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 2.0825 0.2226 2.3469 6 6 2.5962 -0.5328 3.5742 7 1 1.9774 -1.4131 3.7482 8 6 4.0541 -0.9664 3.3419 9 6 4.6073 -1.4179 4.7182 10 16 3.9551 -0.1331 5.8510 11 8 4.8914 0.9318 5.9442 12 8 3.4640 -0.7519 7.0321 13 6 2.5452 0.3888 4.8089 14 6 2.0323 -0.7104 -1.2305 15 6 2.0714 -2.0925 -1.2616 16 6 2.5259 -2.7465 -2.3899 17 6 2.9546 -2.0148 -3.4896 18 8 3.4067 -2.6547 -4.5981 19 6 3.6985 -1.8905 -5.6699 20 1 3.6473 -0.8143 -5.5957 21 6 4.0642 -2.4863 -6.8673 22 7 4.3484 -1.7406 -7.9132 23 14 4.1533 -4.3478 -6.9954 24 1 2.8333 -4.8783 -7.4211 25 1 5.1846 -4.7264 -7.9945 26 1 4.5128 -4.9183 -5.6723 27 6 2.9195 -0.6269 -3.4530 28 6 2.4582 0.0212 -2.3241 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.4495 -1.4979 1.4101 33 1 2.7588 1.0462 2.1182 34 1 1.0871 0.6164 2.5525 35 1 4.0890 -1.7958 2.6354 36 1 4.6373 -0.1274 2.9622 37 1 5.6973 -1.4152 4.7168 38 1 4.2247 -2.4022 4.9883 39 1 2.6614 1.4303 4.5090 40 1 1.6058 0.2524 5.3446 41 1 1.7424 -2.6609 -0.4043 42 1 2.5521 -3.8260 -2.4152 43 1 4.6046 -2.1574 -8.7507 44 1 3.2526 -0.0551 -4.3065 45 1 2.4302 1.1004 -2.2952 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000038083357.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:53:36 Heat of formation + Delta-G solvation = -100.966087 kcal Electronic energy + Delta-G solvation = -26469.811363 eV Core-core repulsion = 22578.983479 eV Total energy + Delta-G solvation = -3890.827884 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.91091 -39.38840 -38.24929 -38.01492 -37.00979 -36.16294 -34.41264 -32.25075 -31.73946 -30.64817 -29.36535 -27.23084 -26.74252 -24.57405 -23.84715 -23.33104 -21.62862 -21.17317 -19.76515 -19.66675 -19.06196 -17.71424 -17.59069 -16.81007 -16.63148 -16.55729 -15.95731 -15.85981 -15.64422 -15.61279 -15.29137 -14.98243 -14.82260 -14.46988 -14.28044 -14.07775 -14.05632 -13.84084 -13.48610 -13.28476 -13.17056 -13.05590 -13.01774 -12.82771 -12.63724 -12.56007 -12.37389 -12.30579 -12.06964 -12.03127 -11.76446 -11.54910 -11.46101 -11.21979 -11.07434 -10.87066 -9.72073 -9.22267 -8.87784 -8.48340 -6.20292 -0.81928 0.64942 0.73642 1.32011 1.36211 1.52755 1.68780 2.29181 2.71767 2.79555 3.08033 3.11085 3.19475 3.29591 3.59665 3.75256 3.91227 4.02183 4.04626 4.12583 4.15178 4.22441 4.40622 4.43697 4.53477 4.58141 4.66070 4.73944 4.76264 4.83859 4.93475 4.94355 4.96719 5.04016 5.08368 5.27104 5.32105 5.33305 5.35344 5.46933 5.62688 5.80811 5.86218 5.96386 6.21341 6.33447 6.63734 6.86532 7.63216 8.63473 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.021012 B = 0.002009 C = 0.001929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.233259 B =13934.082882 C =14509.461428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.144 3.856 3 H 0.084 0.916 4 N -0.686 5.686 5 C 0.066 3.934 6 C -0.077 4.077 7 H 0.113 0.887 8 C -0.113 4.113 9 C -0.571 4.571 10 S 2.382 3.618 11 O -0.988 6.988 12 O -0.987 6.987 13 C -0.569 4.569 14 C -0.130 4.130 15 C -0.046 4.046 16 C -0.194 4.194 17 C 0.113 3.887 18 O -0.249 6.249 19 C -0.396 4.396 20 H 0.079 0.921 21 C 0.007 3.993 22 N -0.926 5.926 23 Si 0.972 3.028 24 H -0.266 1.266 25 H -0.269 1.269 26 H -0.262 1.262 27 C -0.239 4.239 28 C -0.075 4.075 29 H 0.072 0.928 30 H 0.052 0.948 31 H 0.061 0.939 32 H 0.350 0.650 33 H 0.075 0.925 34 H 0.053 0.947 35 H 0.108 0.892 36 H 0.083 0.917 37 H 0.142 0.858 38 H 0.154 0.846 39 H 0.150 0.850 40 H 0.159 0.841 41 H 0.153 0.847 42 H 0.124 0.876 43 H 0.284 0.716 44 H 0.102 0.898 45 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.670 1.845 27.014 28.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.034 3.966 3 H 0.102 0.898 4 N -0.317 5.317 5 C -0.064 4.064 6 C -0.097 4.097 7 H 0.131 0.869 8 C -0.152 4.152 9 C -0.703 4.703 10 S 2.572 3.428 11 O -0.985 6.985 12 O -0.984 6.984 13 C -0.702 4.702 14 C -0.131 4.131 15 C -0.064 4.064 16 C -0.213 4.213 17 C 0.065 3.935 18 O -0.157 6.157 19 C -0.473 4.473 20 H 0.096 0.904 21 C -0.191 4.191 22 N -0.567 5.567 23 Si 0.794 3.206 24 H -0.191 1.191 25 H -0.193 1.193 26 H -0.187 1.187 27 C -0.258 4.258 28 C -0.093 4.093 29 H 0.091 0.909 30 H 0.071 0.929 31 H 0.080 0.920 32 H 0.170 0.830 33 H 0.094 0.906 34 H 0.071 0.929 35 H 0.127 0.873 36 H 0.102 0.898 37 H 0.160 0.840 38 H 0.172 0.828 39 H 0.168 0.832 40 H 0.177 0.823 41 H 0.171 0.829 42 H 0.142 0.858 43 H 0.093 0.907 44 H 0.120 0.880 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -6.573 2.043 27.568 28.414 hybrid contribution -0.686 -0.290 -1.491 1.666 sum -7.259 1.753 26.077 27.125 Atomic orbital electron populations 1.22436 0.95522 1.02716 1.02428 1.20131 0.92889 0.96653 0.86884 0.89754 1.60476 1.58113 1.10084 1.03052 1.22068 1.00666 0.95113 0.88546 1.21589 0.97621 0.98346 0.92149 0.86882 1.22288 0.94219 1.04032 0.94622 1.30522 1.12391 1.16414 1.10957 1.08958 0.78556 0.77619 0.77650 1.93565 1.62130 1.55125 1.87681 1.93550 1.81080 1.77283 1.46471 1.30409 1.18491 1.10624 1.10669 1.19699 1.04208 0.93609 0.95621 1.20762 0.96036 0.93932 0.95671 1.20553 1.07673 0.99912 0.93184 1.19707 0.93986 0.92038 0.87798 1.83506 1.75560 1.36615 1.20000 1.20683 1.47035 0.91439 0.88124 0.90362 1.25299 0.95673 1.04932 0.93228 1.69736 1.46571 1.38023 1.02375 0.85193 0.78780 0.77955 0.78627 1.19083 1.19338 1.18676 1.21226 1.09618 0.94079 1.00861 1.20895 0.96598 0.99835 0.91994 0.90926 0.92890 0.91953 0.82989 0.90615 0.92918 0.87320 0.89829 0.83975 0.82771 0.83233 0.82309 0.82942 0.85762 0.90671 0.88018 0.85147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.37 9.14 71.98 0.66 -1.71 16 2 C 0.14 2.37 2.79 44.17 0.12 2.49 16 3 H 0.08 1.37 7.66 -2.38 -0.02 1.35 16 4 N -0.69 -8.02 5.45 -495.45 -2.70 -10.72 16 5 C 0.07 0.50 4.73 86.30 0.41 0.91 16 6 C -0.08 -0.39 2.75 -10.11 -0.03 -0.42 16 7 H 0.11 0.19 8.14 -2.39 -0.02 0.17 16 8 C -0.11 -0.86 5.57 31.59 0.18 -0.69 16 9 C -0.57 -3.95 7.31 72.68 0.53 -3.42 16 10 S 2.38 27.87 6.11 -56.49 -0.34 27.53 16 11 O -0.99 -20.60 18.15 -127.49 -2.31 -22.91 16 12 O -0.99 -19.25 18.14 -127.49 -2.31 -21.56 16 13 C -0.57 -2.69 6.75 72.38 0.49 -2.20 16 14 C -0.13 -3.37 4.96 -19.84 -0.10 -3.47 16 15 C -0.05 -1.24 9.32 22.25 0.21 -1.03 16 16 C -0.19 -7.04 9.99 22.39 0.22 -6.81 16 17 C 0.11 5.21 6.65 22.58 0.15 5.36 16 18 O -0.25 -13.50 8.58 -22.64 -0.19 -13.70 16 19 C -0.40 -23.45 9.95 67.92 0.68 -22.78 16 20 H 0.08 4.87 5.44 -2.91 -0.02 4.85 16 21 C 0.01 0.38 5.49 84.83 0.47 0.85 16 22 N -0.93 -55.60 13.96 21.61 0.30 -55.30 16 23 Si 0.97 45.50 28.62 68.60 1.96 47.46 16 24 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 25 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 26 H -0.26 -12.22 7.11 99.48 0.71 -11.52 16 27 C -0.24 -10.29 9.17 22.39 0.21 -10.09 16 28 C -0.07 -2.43 9.66 22.25 0.21 -2.21 16 29 H 0.07 0.71 7.45 -2.39 -0.02 0.69 16 30 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.06 0.84 8.13 -2.39 -0.02 0.82 16 32 H 0.35 3.02 7.81 -89.69 -0.70 2.32 16 33 H 0.08 0.68 8.02 -2.39 -0.02 0.66 16 34 H 0.05 0.29 7.44 -2.39 -0.02 0.27 16 35 H 0.11 0.94 8.14 -2.38 -0.02 0.92 16 36 H 0.08 0.74 8.09 -2.39 -0.02 0.73 16 37 H 0.14 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.15 0.56 8.14 -2.38 -0.02 0.54 16 39 H 0.15 0.48 7.89 -2.39 -0.02 0.46 16 40 H 0.16 0.19 8.14 -2.39 -0.02 0.17 16 41 H 0.15 2.87 7.23 -2.91 -0.02 2.85 16 42 H 0.12 4.20 8.06 -2.91 -0.02 4.17 16 43 H 0.28 15.62 8.31 -92.71 -0.77 14.85 16 44 H 0.10 4.92 5.64 -2.91 -0.02 4.91 16 45 H 0.13 3.55 8.03 -2.91 -0.02 3.53 16 Total: -1.00 -81.31 378.59 -0.90 -82.21 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: 0.30 Total: 12.22 kcal Atomic # 6 Polarization: -49.63 SS G_CDS: 4.40 Total: -45.23 kcal Atomic # 7 Polarization: -63.62 SS G_CDS: -2.40 Total: -66.01 kcal Atomic # 8 Polarization: -53.35 SS G_CDS: -4.82 Total: -58.17 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 1.96 Total: 47.46 kcal Atomic # 16 Polarization: 27.87 SS G_CDS: -0.34 Total: 27.53 kcal Total: -81.31 -0.90 -82.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038083357.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.759 kcal (2) G-P(sol) polarization free energy of solvation -81.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds