Wall clock time and date at job start Tue Mar 31 2020 23:20:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.46974 * 2 1 4 4 O 1.42902 * 109.46873 * 180.02562 * 3 2 1 5 5 C 1.35995 * 116.99784 * 179.97438 * 4 3 2 6 6 C 1.38563 * 120.07579 * 0.02562 * 5 4 3 7 7 C 1.38240 * 119.99989 * 179.70750 * 6 5 4 8 8 C 1.38248 * 120.14869 * 0.54021 * 7 6 5 9 9 C 1.50694 * 119.92984 * 179.72468 * 8 7 6 10 10 N 1.46499 * 109.47550 * 269.73374 * 9 8 7 11 11 C 1.34777 * 120.00199 * 180.02562 * 10 9 8 12 12 O 1.21283 * 119.99750 * 359.97438 * 11 10 9 13 13 C 1.50702 * 119.99928 * 180.27479 * 11 10 9 14 14 S 1.80999 * 109.46903 * 179.72354 * 13 11 10 15 15 C 1.76200 * 99.99730 * 179.97438 * 14 13 11 16 16 H 1.08001 * 120.00351 * 0.02562 * 15 14 13 17 17 C 1.38796 * 120.00095 * 179.97438 * 15 14 13 18 18 N 1.31630 * 120.00506 * 180.02562 * 17 15 14 19 19 Si 1.86809 * 119.99909 * 359.97438 * 17 15 14 20 20 H 1.48497 * 109.47104 * 90.00095 * 19 17 15 21 21 H 1.48502 * 109.46943 * 210.00235 * 19 17 15 22 22 H 1.48497 * 109.46910 * 330.00035 * 19 17 15 23 23 C 1.38243 * 120.14202 * 359.45930 * 8 7 6 24 24 C 1.38563 * 120.00442 * 0.26451 * 23 8 7 25 25 O 1.35994 * 120.07613 * 179.97438 * 24 23 8 26 26 C 1.42898 * 116.99961 * 0.02562 * 25 24 23 27 27 H 1.09000 * 109.47110 * 60.00415 * 1 2 3 28 28 H 1.09001 * 109.47178 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47364 * 300.00170 * 1 2 3 30 30 H 1.08996 * 109.47364 * 239.99830 * 2 1 3 31 31 H 1.09000 * 109.47110 * 119.99584 * 2 1 3 32 32 H 1.08996 * 109.47214 * 59.99738 * 3 2 1 33 33 H 1.08995 * 109.46886 * 299.99254 * 3 2 1 34 34 H 1.08008 * 119.99465 * 359.97438 * 6 5 4 35 35 H 1.08005 * 119.92407 * 180.29826 * 7 6 5 36 36 H 1.08998 * 109.47333 * 149.72968 * 9 8 7 37 37 H 1.09002 * 109.47271 * 29.73402 * 9 8 7 38 38 H 0.97000 * 119.99484 * 359.97438 * 10 9 8 39 39 H 1.09004 * 109.46965 * 299.72211 * 13 11 10 40 40 H 1.08994 * 109.46990 * 59.72065 * 13 11 10 41 41 H 0.96998 * 120.00709 * 180.02562 * 18 17 15 42 42 H 1.08005 * 120.00105 * 180.25031 * 23 8 7 43 43 H 1.08995 * 109.47233 * 299.99906 * 26 25 24 44 44 H 1.09007 * 109.47077 * 59.99863 * 26 25 24 45 45 H 1.09003 * 109.47260 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 3.4690 1.4425 -0.0006 5 6 4.0863 2.6543 -0.0012 6 6 3.3332 3.8174 -0.0007 7 6 3.9624 5.0482 0.0048 8 6 5.3428 5.1224 -0.0015 9 6 6.0236 6.4669 -0.0018 10 7 6.2435 6.9027 -1.3830 11 6 6.8424 8.0847 -1.6295 12 8 7.1988 8.7877 -0.7077 13 6 7.0630 8.5358 -3.0504 14 16 7.8753 10.1533 -3.0505 15 6 8.0074 10.4291 -4.7858 16 1 7.6337 9.6909 -5.4799 17 6 8.5909 11.5955 -5.2607 18 7 8.6891 11.8018 -6.5570 19 14 9.2355 12.8733 -4.0601 20 1 10.6578 12.5843 -3.7460 21 1 9.1275 14.2234 -4.6690 22 1 8.4336 12.8279 -2.8111 23 6 6.1002 3.9659 -0.0020 24 6 5.4759 2.7289 -0.0018 25 8 6.2195 1.5902 -0.0028 26 6 7.6403 1.7432 -0.0036 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9564 0.8899 33 1 1.6767 1.9563 -0.8900 34 1 2.2545 3.7621 -0.0002 35 1 3.3741 5.9540 0.0100 36 1 6.9819 6.3890 0.5116 37 1 5.3940 7.1930 0.5124 38 1 5.9587 6.3402 -2.1202 39 1 7.6935 7.8125 -3.5675 40 1 6.1029 8.6113 -3.5608 41 1 9.0972 12.6168 -6.8889 42 1 7.1785 4.0265 -0.0029 43 1 7.9460 2.2934 -0.8934 44 1 7.9470 2.2926 0.8866 45 1 8.1116 0.7604 -0.0039 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000041841247.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:20:36 Heat of formation + Delta-G solvation = -120.586080 kcal Electronic energy + Delta-G solvation = -25652.942508 eV Core-core repulsion = 21761.263837 eV Total energy + Delta-G solvation = -3891.678671 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.68914 -40.61438 -39.59346 -38.37946 -35.72332 -34.74119 -34.66108 -32.27353 -31.31514 -30.53071 -28.40989 -27.85804 -27.59410 -26.12729 -23.67444 -22.57600 -21.99978 -21.82898 -19.96648 -19.47549 -18.30804 -17.82080 -17.69593 -17.37653 -17.22105 -16.99143 -16.55261 -16.52256 -15.85137 -15.68857 -15.41585 -15.11130 -14.96794 -14.89287 -14.79015 -14.48888 -14.06826 -13.56760 -13.46612 -13.33521 -13.20695 -13.02306 -12.96080 -12.94458 -12.65467 -12.44718 -12.29691 -12.12738 -12.00583 -11.85406 -11.82867 -11.53057 -11.16363 -11.04432 -10.53035 -10.16889 -9.78012 -8.98609 -8.86347 -8.50735 -6.21580 0.13269 0.31248 1.01038 1.32362 1.48046 1.56657 1.57818 2.16075 2.22135 2.26673 2.32346 2.66530 2.81000 2.87497 3.54577 3.71570 3.89672 3.95398 3.96380 3.99248 4.13146 4.23215 4.28687 4.29538 4.31583 4.37705 4.48428 4.51347 4.55887 4.57588 4.64121 4.73053 4.76253 4.81620 5.03041 5.12722 5.18275 5.20988 5.34361 5.35401 5.50490 5.62473 5.71348 6.08233 6.12209 6.44966 6.56859 6.94370 7.17319 8.61595 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.019556 B = 0.001851 C = 0.001798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.470014 B =15125.217796 C =15570.050922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.122 4.122 3 C 0.050 3.950 4 O -0.326 6.326 5 C 0.094 3.906 6 C -0.172 4.172 7 C -0.093 4.093 8 C -0.105 4.105 9 C 0.169 3.831 10 N -0.708 5.708 11 C 0.537 3.463 12 O -0.561 6.561 13 C -0.112 4.112 14 S -0.173 6.173 15 C -0.530 4.530 16 H 0.062 0.938 17 C 0.045 3.955 18 N -0.917 5.917 19 Si 0.915 3.085 20 H -0.262 1.262 21 H -0.259 1.259 22 H -0.236 1.236 23 C -0.151 4.151 24 C 0.078 3.922 25 O -0.329 6.329 26 C 0.018 3.982 27 H 0.062 0.938 28 H 0.070 0.930 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.158 0.842 35 H 0.147 0.853 36 H 0.072 0.928 37 H 0.078 0.922 38 H 0.414 0.586 39 H 0.112 0.888 40 H 0.114 0.886 41 H 0.277 0.723 42 H 0.147 0.853 43 H 0.061 0.939 44 H 0.064 0.936 45 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.465 -25.816 16.245 33.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.159 4.159 3 C -0.025 4.025 4 O -0.241 6.241 5 C 0.048 3.952 6 C -0.190 4.190 7 C -0.111 4.111 8 C -0.106 4.106 9 C 0.047 3.953 10 N -0.362 5.362 11 C 0.323 3.677 12 O -0.439 6.439 13 C -0.263 4.263 14 S 0.053 5.947 15 C -0.678 4.678 16 H 0.080 0.920 17 C -0.160 4.160 18 N -0.555 5.555 19 Si 0.737 3.263 20 H -0.187 1.187 21 H -0.184 1.184 22 H -0.160 1.160 23 C -0.171 4.171 24 C 0.033 3.967 25 O -0.243 6.243 26 C -0.076 4.076 27 H 0.081 0.919 28 H 0.089 0.911 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.092 0.908 33 H 0.090 0.910 34 H 0.176 0.824 35 H 0.164 0.836 36 H 0.091 0.909 37 H 0.096 0.904 38 H 0.251 0.749 39 H 0.131 0.869 40 H 0.132 0.868 41 H 0.086 0.914 42 H 0.165 0.835 43 H 0.080 0.920 44 H 0.082 0.918 45 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -13.815 -24.961 17.631 33.537 hybrid contribution 0.074 -0.170 -1.596 1.607 sum -13.740 -25.130 16.035 32.824 Atomic orbital electron populations 1.21680 0.92756 1.03165 1.02769 1.21484 0.97136 0.94084 1.03229 1.23150 0.77004 0.99901 1.02401 1.86134 1.22813 1.26335 1.88819 1.18559 0.89385 0.85822 1.01431 1.21299 1.01124 0.90626 1.05979 1.21046 0.93493 0.98060 0.98530 1.19445 0.93839 0.93252 1.04071 1.20122 1.00321 0.92083 0.82809 1.45844 1.61047 1.19834 1.09482 1.19923 0.76793 0.81255 0.89745 1.90696 1.51472 1.55085 1.46677 1.23276 1.05629 1.00035 0.97354 1.84683 1.78990 1.22113 1.08892 1.22474 1.45792 1.08856 0.90641 0.92007 1.25573 0.94508 0.99276 0.96650 1.70016 1.43824 1.27921 1.13747 0.85860 0.80499 0.79246 0.80716 1.18703 1.18375 1.15982 1.21113 1.01116 0.90115 1.04710 1.18454 0.88732 0.86447 1.03110 1.86137 1.20419 1.28581 1.89200 1.23319 0.76903 1.05303 1.02097 0.91863 0.91136 0.91733 0.91474 0.91332 0.90840 0.91016 0.82412 0.83568 0.90943 0.90389 0.74914 0.86945 0.86818 0.91385 0.83513 0.92020 0.91782 0.86514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.91 71.98 0.71 -0.20 16 2 C -0.12 -1.24 6.30 30.59 0.19 -1.05 16 3 C 0.05 0.61 4.74 71.98 0.34 0.95 16 4 O -0.33 -6.53 9.92 -79.63 -0.79 -7.32 16 5 C 0.09 1.86 6.70 22.57 0.15 2.01 16 6 C -0.17 -2.62 9.04 22.35 0.20 -2.42 16 7 C -0.09 -1.42 9.69 22.27 0.22 -1.21 16 8 C -0.11 -1.83 5.25 -19.86 -0.10 -1.93 16 9 C 0.17 3.45 5.80 85.63 0.50 3.95 16 10 N -0.71 -16.41 5.55 -466.79 -2.59 -19.00 16 11 C 0.54 17.93 7.85 87.66 0.69 18.62 16 12 O -0.56 -23.31 15.86 -3.04 -0.05 -23.36 16 13 C -0.11 -4.15 6.16 71.24 0.44 -3.71 16 14 S -0.17 -8.68 18.55 -56.49 -1.05 -9.73 16 15 C -0.53 -30.77 10.04 67.95 0.68 -30.08 16 16 H 0.06 3.78 8.03 -2.91 -0.02 3.76 16 17 C 0.05 2.65 5.50 84.86 0.47 3.12 16 18 N -0.92 -55.76 13.97 21.65 0.30 -55.46 16 19 Si 0.91 44.82 27.74 68.60 1.90 46.73 16 20 H -0.26 -12.54 7.11 99.48 0.71 -11.83 16 21 H -0.26 -11.92 7.11 99.48 0.71 -11.22 16 22 H -0.24 -11.51 6.74 99.48 0.67 -10.84 16 23 C -0.15 -2.70 8.69 22.35 0.19 -2.51 16 24 C 0.08 1.61 6.70 22.57 0.15 1.76 16 25 O -0.33 -6.93 10.28 -79.61 -0.82 -7.74 16 26 C 0.02 0.24 9.81 113.37 1.11 1.35 16 27 H 0.06 0.35 8.14 -2.39 -0.02 0.33 16 28 H 0.07 0.37 8.14 -2.39 -0.02 0.35 16 29 H 0.06 0.33 8.14 -2.39 -0.02 0.31 16 30 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.07 0.75 8.14 -2.39 -0.02 0.74 16 32 H 0.07 0.70 7.66 -2.39 -0.02 0.68 16 33 H 0.07 0.72 7.66 -2.39 -0.02 0.70 16 34 H 0.16 1.59 6.30 -2.91 -0.02 1.58 16 35 H 0.15 1.78 8.06 -2.91 -0.02 1.76 16 36 H 0.07 1.55 8.08 -2.39 -0.02 1.54 16 37 H 0.08 1.63 8.08 -2.39 -0.02 1.61 16 38 H 0.41 7.58 8.46 -92.71 -0.78 6.80 16 39 H 0.11 3.83 8.14 -2.39 -0.02 3.81 16 40 H 0.11 3.87 8.14 -2.40 -0.02 3.85 16 41 H 0.28 15.55 8.31 -92.71 -0.77 14.78 16 42 H 0.15 2.24 6.30 -2.91 -0.02 2.22 16 43 H 0.06 0.73 7.66 -2.39 -0.02 0.71 16 44 H 0.06 0.71 7.66 -2.38 -0.02 0.69 16 45 H 0.12 1.07 8.14 -2.39 -0.02 1.05 16 Total: -1.00 -76.16 392.41 3.03 -73.13 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: 0.18 Total: 14.12 kcal Atomic # 6 Polarization: -17.30 SS G_CDS: 5.94 Total: -11.36 kcal Atomic # 7 Polarization: -72.17 SS G_CDS: -2.29 Total: -74.46 kcal Atomic # 8 Polarization: -36.77 SS G_CDS: -1.66 Total: -38.43 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 1.90 Total: 46.73 kcal Atomic # 16 Polarization: -8.68 SS G_CDS: -1.05 Total: -9.73 kcal Total: -76.16 3.03 -73.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041841247.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.460 kcal (2) G-P(sol) polarization free energy of solvation -76.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds