Wall clock time and date at job start Tue Mar 31 2020 22:22:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.46960 * 2 1 4 4 N 1.46497 * 109.46860 * 179.97438 * 3 2 1 5 5 C 1.37098 * 120.00360 * 264.74846 * 4 3 2 6 6 H 1.08006 * 119.99556 * 146.16950 * 5 4 3 7 7 C 1.38951 * 120.00077 * 326.17544 * 5 4 3 8 8 N 1.31408 * 119.99655 * 337.67000 * 7 5 4 9 9 Si 1.86796 * 120.00093 * 157.67517 * 7 5 4 10 10 H 1.48499 * 109.47245 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47262 * 119.99686 * 9 7 5 12 12 H 1.48500 * 109.47155 * 239.99831 * 9 7 5 13 13 C 1.34784 * 119.99693 * 84.75372 * 4 3 2 14 14 O 1.21293 * 119.99952 * 179.97438 * 13 4 3 15 15 C 1.50698 * 119.99919 * 359.97438 * 13 4 3 16 16 C 1.50705 * 109.46861 * 180.02562 * 15 13 4 17 17 C 1.38231 * 119.99585 * 90.00568 * 16 15 13 18 18 C 1.38238 * 119.99704 * 180.02562 * 17 16 15 19 19 C 1.38237 * 119.99908 * 359.97438 * 18 17 16 20 20 S 1.76197 * 119.99918 * 179.97438 * 19 18 17 21 21 O 1.42095 * 104.27962 * 206.07125 * 20 19 18 22 22 O 1.42100 * 104.27779 * 333.92996 * 20 19 18 23 23 C 1.81395 * 104.44900 * 90.00033 * 20 19 18 24 24 C 1.52999 * 109.47293 * 179.97438 * 23 20 19 25 25 C 1.38231 * 119.99851 * 0.25729 * 19 18 17 26 26 C 1.38229 * 120.00354 * 359.48799 * 25 19 18 27 27 H 1.09003 * 109.47319 * 59.99977 * 1 2 3 28 28 H 1.09000 * 109.47501 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47661 * 299.99947 * 1 2 3 30 30 H 1.09000 * 109.46936 * 240.00117 * 2 1 3 31 31 H 1.08996 * 109.47018 * 119.99839 * 2 1 3 32 32 H 1.09007 * 109.46865 * 60.00347 * 3 2 1 33 33 H 1.08996 * 109.47124 * 299.99775 * 3 2 1 34 34 H 0.96998 * 119.99786 * 180.02562 * 8 7 5 35 35 H 1.08998 * 109.46863 * 60.00514 * 15 13 4 36 36 H 1.08996 * 109.47129 * 300.00299 * 15 13 4 37 37 H 1.07997 * 120.00509 * 359.97438 * 17 16 15 38 38 H 1.08000 * 120.00065 * 179.97438 * 18 17 16 39 39 H 1.09002 * 109.47389 * 300.00147 * 23 20 19 40 40 H 1.09002 * 109.47515 * 60.00010 * 23 20 19 41 41 H 1.09009 * 109.47347 * 180.02562 * 24 23 20 42 42 H 1.08994 * 109.47195 * 299.99802 * 24 23 20 43 43 H 1.08997 * 109.47313 * 60.00347 * 24 23 20 44 44 H 1.08002 * 119.99749 * 179.72903 * 25 19 18 45 45 H 1.08000 * 120.00508 * 180.23221 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5049 1.4425 0.0006 5 6 4.1900 1.5514 1.1832 6 1 5.1328 1.0400 1.3100 7 6 3.6713 2.3194 2.2185 8 7 2.8002 3.2686 1.9596 9 14 4.2123 2.0026 3.9781 10 1 5.1928 0.8876 4.0014 11 1 4.8428 3.2284 4.5304 12 1 3.0309 1.6396 4.8014 13 6 4.1793 1.3356 -1.1615 14 8 5.3922 1.3361 -1.1611 15 6 3.4262 1.2155 -2.4613 16 6 4.4060 1.1101 -3.6015 17 6 4.8551 -0.1304 -4.0143 18 6 5.7543 -0.2271 -5.0598 19 6 6.2038 0.9167 -5.6929 20 16 7.3503 0.7934 -7.0251 21 8 8.0377 2.0370 -7.0121 22 8 8.0382 -0.4264 -6.7838 23 6 6.3111 0.6561 -8.5055 24 6 7.2011 0.5421 -9.7447 25 6 5.7583 2.1573 -5.2769 26 6 4.8552 2.2538 -4.2349 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9564 0.8901 33 1 1.6766 1.9563 -0.8900 34 1 2.4384 3.8050 2.6823 35 1 2.7994 2.0963 -2.6007 36 1 2.7999 0.3238 -2.4373 37 1 4.5043 -1.0239 -3.5195 38 1 6.1055 -1.1962 -5.3821 39 1 5.6819 -0.2305 -8.4267 40 1 5.6816 1.5418 -8.5910 41 1 6.5766 0.4600 -10.6344 42 1 7.8298 1.4289 -9.8233 43 1 7.8308 -0.3435 -9.6595 44 1 6.1129 3.0512 -5.7687 45 1 4.5042 3.2229 -3.9123 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000077315682.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:11 Heat of formation + Delta-G solvation = -108.399617 kcal Electronic energy + Delta-G solvation = -27126.460096 eV Core-core repulsion = 23235.309870 eV Total energy + Delta-G solvation = -3891.150226 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.98322 -39.77653 -38.14737 -37.14714 -36.98242 -34.71692 -34.00320 -33.81319 -33.00825 -32.03235 -29.37535 -27.43186 -26.16607 -24.91248 -23.87483 -23.24164 -22.41836 -20.68262 -19.96149 -18.86601 -18.82574 -17.89080 -17.30886 -17.25123 -16.81662 -16.52781 -16.31523 -15.84505 -15.50040 -15.38982 -15.29337 -15.10017 -14.64969 -14.50337 -14.15907 -14.08759 -13.74447 -13.43092 -13.35271 -13.30197 -13.16577 -13.10092 -13.05135 -13.04166 -12.85391 -12.60214 -12.34702 -12.26587 -12.12708 -12.06279 -11.98504 -11.84685 -11.50704 -11.34129 -10.90115 -10.54044 -10.02782 -10.00503 -9.47303 -8.37122 -6.05780 -0.89108 -0.17583 0.33694 1.32456 1.38994 1.52010 1.90592 2.01204 2.24656 2.41824 2.97628 2.98784 3.16284 3.16989 3.67945 3.73197 3.76728 3.95286 3.95599 4.06877 4.19409 4.25678 4.34828 4.38823 4.44626 4.54743 4.55553 4.64474 4.75805 4.78421 4.81857 4.88926 4.98820 5.00999 5.06278 5.15128 5.16129 5.17376 5.31418 5.41388 5.47411 5.51795 5.61861 5.86995 6.18651 6.51382 7.16544 7.46068 8.05262 8.64667 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.020063 B = 0.002551 C = 0.002398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.282855 B =10974.882812 C =11674.762832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.133 4.133 3 C 0.099 3.901 4 N -0.452 5.452 5 C -0.340 4.340 6 H 0.059 0.941 7 C 0.005 3.995 8 N -0.884 5.884 9 Si 0.976 3.024 10 H -0.275 1.275 11 H -0.279 1.279 12 H -0.261 1.261 13 C 0.447 3.553 14 O -0.628 6.628 15 C -0.096 4.096 16 C -0.012 4.012 17 C -0.141 4.141 18 C -0.032 4.032 19 C -0.672 4.672 20 S 2.498 3.502 21 O -0.977 6.977 22 O -0.975 6.975 23 C -0.574 4.574 24 C -0.164 4.164 25 C -0.033 4.033 26 C -0.144 4.144 27 H 0.068 0.932 28 H 0.069 0.931 29 H 0.047 0.953 30 H 0.063 0.937 31 H 0.042 0.958 32 H 0.090 0.910 33 H 0.068 0.932 34 H 0.274 0.726 35 H 0.112 0.888 36 H 0.120 0.880 37 H 0.140 0.860 38 H 0.159 0.841 39 H 0.164 0.836 40 H 0.162 0.838 41 H 0.111 0.889 42 H 0.073 0.927 43 H 0.074 0.926 44 H 0.156 0.844 45 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.419 -5.944 -20.820 22.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.171 4.171 3 C -0.024 4.024 4 N -0.170 5.170 5 C -0.468 4.468 6 H 0.077 0.923 7 C -0.197 4.197 8 N -0.522 5.522 9 Si 0.800 3.200 10 H -0.199 1.199 11 H -0.205 1.205 12 H -0.186 1.186 13 C 0.237 3.763 14 O -0.515 6.515 15 C -0.136 4.136 16 C -0.012 4.012 17 C -0.160 4.160 18 C -0.050 4.050 19 C -0.758 4.758 20 S 2.682 3.318 21 O -0.974 6.974 22 O -0.972 6.972 23 C -0.708 4.708 24 C -0.223 4.223 25 C -0.051 4.051 26 C -0.163 4.163 27 H 0.087 0.913 28 H 0.088 0.912 29 H 0.066 0.934 30 H 0.081 0.919 31 H 0.061 0.939 32 H 0.108 0.892 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.130 0.870 36 H 0.138 0.862 37 H 0.158 0.842 38 H 0.177 0.823 39 H 0.182 0.818 40 H 0.180 0.820 41 H 0.129 0.871 42 H 0.092 0.908 43 H 0.093 0.907 44 H 0.174 0.826 45 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -4.062 -5.779 -20.562 21.741 hybrid contribution -0.352 0.259 1.685 1.740 sum -4.413 -5.519 -18.877 20.156 Atomic orbital electron populations 1.21632 0.93267 1.02408 1.02228 1.21886 0.97416 0.96528 1.01279 1.21818 0.79721 0.96932 1.03940 1.43802 1.06191 1.62609 1.04413 1.19359 1.06818 1.29732 0.90918 0.92297 1.25989 0.97195 0.93016 1.03549 1.69974 1.31223 1.16902 1.34090 0.85156 0.78650 0.78170 0.78056 1.19942 1.20486 1.18561 1.21002 0.87828 0.81534 0.85970 1.90526 1.16419 1.56851 1.87697 1.20798 0.97272 1.06204 0.89295 1.19939 0.94389 0.94281 0.92628 1.21358 0.99031 0.97649 0.97922 1.21129 0.92289 0.98187 0.93422 1.30644 1.22158 0.99469 1.23508 1.05406 0.76052 0.73216 0.77169 1.93511 1.71709 1.44944 1.87227 1.93511 1.71633 1.46825 1.85259 1.29973 1.13680 1.14925 1.12245 1.21785 1.00041 1.03893 0.96555 1.21090 0.92330 0.96781 0.94914 1.21350 0.99150 0.98701 0.97119 0.91271 0.91201 0.93372 0.91870 0.93907 0.89198 0.91392 0.91614 0.87013 0.86238 0.84180 0.82320 0.81837 0.81980 0.87065 0.90785 0.90689 0.82639 0.84885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.40 9.91 71.98 0.71 -2.69 16 2 C -0.13 -4.36 6.17 30.60 0.19 -4.17 16 3 C 0.10 4.05 4.72 86.38 0.41 4.46 16 4 N -0.45 -22.74 2.56 -635.52 -1.63 -24.37 16 5 C -0.34 -19.37 8.98 84.04 0.75 -18.61 16 6 H 0.06 3.66 7.70 -2.91 -0.02 3.64 16 7 C 0.01 0.28 4.92 84.93 0.42 0.69 16 8 N -0.88 -46.91 11.33 21.66 0.25 -46.66 16 9 Si 0.98 42.51 29.61 68.60 2.03 44.54 16 10 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 11 H -0.28 -12.01 7.11 99.48 0.71 -11.31 16 12 H -0.26 -10.53 7.11 99.48 0.71 -9.83 16 13 C 0.45 21.73 7.59 87.66 0.66 22.40 16 14 O -0.63 -36.63 15.86 -3.07 -0.05 -36.68 16 15 C -0.10 -3.30 4.44 29.10 0.13 -3.17 16 16 C -0.01 -0.39 4.37 -19.86 -0.09 -0.48 16 17 C -0.14 -4.25 9.70 22.27 0.22 -4.03 16 18 C -0.03 -0.85 9.47 22.27 0.21 -0.64 16 19 C -0.67 -17.53 5.66 22.27 0.13 -17.40 16 20 S 2.50 53.57 5.16 -56.49 -0.29 53.28 16 21 O -0.98 -27.63 17.12 -127.65 -2.19 -29.82 16 22 O -0.97 -27.12 17.13 -127.65 -2.19 -29.31 16 23 C -0.57 -5.24 6.70 71.98 0.48 -4.76 16 24 C -0.16 -1.35 9.92 71.98 0.71 -0.64 16 25 C -0.03 -0.91 9.47 22.27 0.21 -0.70 16 26 C -0.14 -4.57 9.70 22.27 0.22 -4.35 16 27 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 28 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.06 1.88 6.59 -2.39 -0.02 1.86 16 31 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.09 4.18 5.34 -2.38 -0.01 4.17 16 33 H 0.07 2.44 6.66 -2.39 -0.02 2.42 16 34 H 0.27 13.52 8.31 -92.71 -0.77 12.74 16 35 H 0.11 3.39 7.36 -2.39 -0.02 3.37 16 36 H 0.12 3.37 6.48 -2.39 -0.02 3.35 16 37 H 0.14 3.73 8.06 -2.91 -0.02 3.70 16 38 H 0.16 3.42 7.57 -2.91 -0.02 3.39 16 39 H 0.16 0.72 8.14 -2.39 -0.02 0.70 16 40 H 0.16 0.77 8.14 -2.39 -0.02 0.75 16 41 H 0.11 0.40 8.14 -2.38 -0.02 0.38 16 42 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 43 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 44 H 0.16 3.60 7.56 -2.91 -0.02 3.57 16 45 H 0.13 3.95 8.06 -2.91 -0.02 3.92 16 Total: -1.00 -83.14 384.76 2.29 -80.85 By element: Atomic # 1 Polarization: 21.26 SS G_CDS: 0.98 Total: 22.25 kcal Atomic # 6 Polarization: -39.45 SS G_CDS: 5.37 Total: -34.09 kcal Atomic # 7 Polarization: -69.65 SS G_CDS: -1.38 Total: -71.03 kcal Atomic # 8 Polarization: -91.38 SS G_CDS: -4.42 Total: -95.80 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 2.03 Total: 44.54 kcal Atomic # 16 Polarization: 53.57 SS G_CDS: -0.29 Total: 53.28 kcal Total: -83.14 2.29 -80.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000077315682.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.547 kcal (2) G-P(sol) polarization free energy of solvation -83.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds