Wall clock time and date at job start Tue Mar 31 2020 23:55:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.46821 * 2 1 4 4 C 1.50700 * 109.47101 * 240.00390 * 2 1 3 5 5 O 1.21274 * 120.00002 * 239.99670 * 4 2 1 6 6 N 1.34783 * 119.99891 * 59.99657 * 4 2 1 7 7 C 1.46498 * 119.99571 * 180.02562 * 6 4 2 8 8 C 1.53007 * 109.46853 * 180.02562 * 7 6 4 9 9 C 1.53000 * 109.46783 * 179.97438 * 8 7 6 10 10 C 1.50703 * 109.46711 * 179.97438 * 9 8 7 11 11 H 1.08002 * 120.00151 * 359.97438 * 10 9 8 12 12 C 1.37877 * 120.00079 * 180.02562 * 10 9 8 13 13 N 1.31514 * 120.00035 * 359.97438 * 12 10 9 14 14 Si 1.86802 * 120.00015 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47163 * 359.97438 * 14 12 10 16 16 H 1.48498 * 109.47252 * 119.99829 * 14 12 10 17 17 H 1.48507 * 109.46514 * 239.99617 * 14 12 10 18 18 C 1.50690 * 109.47450 * 120.00033 * 2 1 3 19 19 C 1.38235 * 120.00265 * 240.00000 * 18 2 1 20 20 C 1.38241 * 120.00144 * 180.02562 * 19 18 2 21 21 C 1.38228 * 119.99681 * 359.97438 * 20 19 18 22 22 S 1.76203 * 119.99649 * 179.97438 * 21 20 19 23 23 C 1.81404 * 104.44838 * 90.00553 * 22 21 20 24 24 O 1.42100 * 104.28012 * 333.93528 * 22 21 20 25 25 O 1.42100 * 104.27885 * 206.07639 * 22 21 20 26 26 C 1.38234 * 120.00757 * 0.25984 * 21 20 19 27 27 C 1.38235 * 120.00049 * 60.02472 * 18 2 1 28 28 H 1.09000 * 109.46884 * 299.99539 * 1 2 3 29 29 H 1.08996 * 109.47353 * 60.00044 * 1 2 3 30 30 H 1.09005 * 109.46821 * 179.97438 * 1 2 3 31 31 H 0.96995 * 119.99756 * 0.02562 * 6 4 2 32 32 H 1.09005 * 109.47337 * 299.99270 * 7 6 4 33 33 H 1.08996 * 109.47621 * 60.00263 * 7 6 4 34 34 H 1.09005 * 109.46346 * 299.99624 * 8 7 6 35 35 H 1.08991 * 109.47119 * 59.99145 * 8 7 6 36 36 H 1.08996 * 109.47427 * 299.99201 * 9 8 7 37 37 H 1.08996 * 109.47528 * 60.00110 * 9 8 7 38 38 H 0.96997 * 120.00477 * 180.02562 * 13 12 10 39 39 H 1.07998 * 120.00298 * 0.02562 * 19 18 2 40 40 H 1.07998 * 119.99727 * 179.97438 * 20 19 18 41 41 H 1.09002 * 109.47124 * 299.99881 * 23 22 21 42 42 H 1.09001 * 109.46975 * 180.02562 * 23 22 21 43 43 H 1.09004 * 109.47147 * 59.99966 * 23 22 21 44 44 H 1.08001 * 120.00506 * 179.72371 * 26 21 20 45 45 H 1.08000 * 120.00004 * 359.97438 * 27 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 8 2.7296 -1.6963 -1.1193 6 7 1.7066 -0.2498 -2.4546 7 6 2.1945 -0.9407 -3.6508 8 6 1.6851 -0.2189 -4.9000 9 6 2.1952 -0.9401 -6.1493 10 6 1.6928 -0.2296 -7.3797 11 1 1.0716 0.6483 -7.2806 12 6 2.0255 -0.7008 -8.6320 13 7 2.7816 -1.7701 -8.7528 14 14 1.4035 0.1803 -10.1572 15 1 0.5789 1.3473 -9.7529 16 1 2.5587 0.6462 -10.9655 17 1 0.5778 -0.7526 -10.9655 18 6 2.0324 -0.7104 1.2304 19 6 2.8271 -0.0386 2.1403 20 6 3.2884 -0.6904 3.2687 21 6 2.9545 -2.0138 3.4874 22 16 3.5430 -2.8449 4.9253 23 6 2.2607 -2.5514 6.1744 24 8 4.7375 -2.1541 5.2652 25 8 3.5705 -4.2155 4.5514 26 6 2.1638 -2.6871 2.5751 27 6 1.6989 -2.0340 1.4489 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.1493 0.5390 -2.5435 32 1 3.2846 -0.9410 -3.6511 33 1 1.8309 -1.9682 -3.6507 34 1 0.5950 -0.2183 -4.9000 35 1 2.0490 0.8084 -4.8999 36 1 3.2851 -0.9404 -6.1491 37 1 1.8315 -1.9676 -6.1496 38 1 3.0160 -2.1014 -9.6338 39 1 3.0877 0.9955 1.9697 40 1 3.9097 -0.1657 3.9794 41 1 2.1528 -1.4794 6.3395 42 1 2.5457 -3.0356 7.1085 43 1 1.3132 -2.9625 5.8260 44 1 1.9066 -3.7224 2.7437 45 1 1.0780 -2.5588 0.7380 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084541828.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:55:51 Heat of formation + Delta-G solvation = -99.300281 kcal Electronic energy + Delta-G solvation = -25999.322228 eV Core-core repulsion = 22108.566579 eV Total energy + Delta-G solvation = -3890.755649 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.51897 -38.94104 -37.43628 -36.27420 -35.53232 -34.59731 -33.33665 -31.37101 -31.32458 -30.19769 -29.73605 -26.86802 -25.20245 -23.48144 -23.18081 -22.05760 -20.75153 -19.73395 -19.38098 -18.16431 -17.17393 -16.70853 -16.55334 -16.25044 -16.09551 -15.60855 -15.14158 -15.00732 -14.77856 -14.46431 -14.17549 -13.89800 -13.79867 -13.70385 -13.66880 -13.31512 -13.11376 -12.57483 -12.41404 -12.32694 -12.31602 -12.23289 -11.93967 -11.76940 -11.73197 -11.47812 -11.34512 -10.95447 -10.92894 -10.78345 -10.60522 -9.93103 -9.92184 -9.53554 -9.34800 -9.26299 -9.13306 -8.86392 -8.40954 -6.05118 -4.08527 -0.32435 0.50579 1.05411 2.50208 2.64449 3.00829 3.27409 3.34791 3.37207 3.39835 3.62085 3.73149 4.12767 4.29717 4.31871 4.41202 4.47944 4.59355 4.70729 4.76577 4.90271 5.02709 5.13755 5.15189 5.28249 5.30721 5.39954 5.43699 5.64951 5.67495 5.70287 5.71837 5.77678 5.88168 6.10016 6.18593 6.39778 6.53694 6.54491 6.76038 6.94739 7.59412 7.59972 7.71589 7.93277 8.26972 8.34545 8.98356 9.55948 11.06151 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.029986 B = 0.001699 C = 0.001655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.558569 B =16480.311575 C =16910.878765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.083 4.083 3 H 0.109 0.891 4 C 0.511 3.489 5 O -0.533 6.533 6 N -0.723 5.723 7 C 0.116 3.884 8 C -0.120 4.120 9 C 0.023 3.977 10 C -0.523 4.523 11 H 0.056 0.944 12 C 0.056 3.944 13 N -0.893 5.893 14 Si 0.893 3.107 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.284 1.284 18 C -0.008 4.008 19 C -0.133 4.133 20 C -0.027 4.027 21 C -0.662 4.662 22 S 2.500 3.500 23 C -0.650 4.650 24 O -0.939 6.939 25 O -0.937 6.937 26 C -0.025 4.025 27 C -0.104 4.104 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.398 0.602 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.054 0.946 35 H 0.054 0.946 36 H 0.019 0.981 37 H 0.019 0.981 38 H 0.261 0.739 39 H 0.132 0.868 40 H 0.141 0.859 41 H 0.131 0.869 42 H 0.131 0.869 43 H 0.132 0.868 44 H 0.141 0.859 45 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.162 4.120 31.810 32.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.104 4.104 3 H 0.127 0.873 4 C 0.295 3.705 5 O -0.409 6.409 6 N -0.374 5.374 7 C -0.006 4.006 8 C -0.158 4.158 9 C -0.015 4.015 10 C -0.561 4.561 11 H 0.074 0.926 12 C -0.145 4.145 13 N -0.532 5.532 14 Si 0.721 3.279 15 H -0.198 1.198 16 H -0.210 1.210 17 H -0.210 1.210 18 C -0.008 4.008 19 C -0.152 4.152 20 C -0.046 4.046 21 C -0.749 4.749 22 S 2.680 3.320 23 C -0.800 4.800 24 O -0.936 6.936 25 O -0.934 6.934 26 C -0.044 4.044 27 C -0.123 4.123 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.085 0.915 31 H 0.232 0.768 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.037 0.963 37 H 0.037 0.963 38 H 0.071 0.929 39 H 0.150 0.850 40 H 0.159 0.841 41 H 0.150 0.850 42 H 0.149 0.851 43 H 0.150 0.850 44 H 0.159 0.841 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -4.807 2.819 31.810 32.294 hybrid contribution -1.231 1.335 -1.344 2.259 sum -6.038 4.154 30.466 31.335 Atomic orbital electron populations 1.21808 0.91412 1.03448 1.03249 1.20478 0.98228 1.00641 0.91099 0.87319 1.20284 0.80779 0.84911 0.84486 1.90753 1.37472 1.26100 1.86621 1.46186 1.53268 1.31975 1.05931 1.21674 0.99338 0.96538 0.83091 1.21889 1.00167 0.99505 0.94269 1.19037 0.96703 0.95704 0.90015 1.21231 1.31646 1.12341 0.90901 0.92590 1.25040 0.95163 0.95060 0.99247 1.69972 1.36729 1.22964 1.23522 0.86521 0.78634 0.79644 0.83086 1.19773 1.20978 1.20986 1.19700 0.93706 0.94105 0.93318 1.21143 0.98685 1.00584 0.94809 1.20843 0.94566 0.92083 0.97086 1.30424 1.15854 1.07012 1.21649 1.05119 0.76249 0.74740 0.75864 1.30235 1.19446 1.12437 1.17896 1.93585 1.41213 1.74966 1.83866 1.93597 1.86434 1.31713 1.81679 1.20904 0.91951 0.99178 0.92357 1.21085 1.00318 0.94002 0.96920 0.91140 0.91076 0.91543 0.76774 0.91729 0.91700 0.92714 0.92722 0.96263 0.96267 0.92939 0.85006 0.84138 0.85005 0.85093 0.84952 0.84108 0.85099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.96 8.90 37.16 0.33 -0.63 16 2 C -0.08 -0.75 2.90 -92.93 -0.27 -1.02 16 3 H 0.11 0.75 7.88 -51.93 -0.41 0.34 16 4 C 0.51 6.88 7.02 -10.98 -0.08 6.80 16 5 O -0.53 -9.54 15.11 5.56 0.08 -9.46 16 6 N -0.72 -9.46 5.45 -60.29 -0.33 -9.79 16 7 C 0.12 1.97 5.67 -4.04 -0.02 1.94 16 8 C -0.12 -2.27 5.27 -26.73 -0.14 -2.41 16 9 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 10 C -0.52 -14.43 9.11 -34.44 -0.31 -14.75 16 11 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 12 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 13 N -0.89 -26.66 13.29 55.43 0.74 -25.93 16 14 Si 0.89 21.30 29.54 -169.99 -5.02 16.27 16 15 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 16 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 17 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 18 C -0.01 -0.08 4.40 -104.63 -0.46 -0.54 16 19 C -0.13 -1.20 9.67 -39.58 -0.38 -1.58 16 20 C -0.03 -0.24 9.47 -39.58 -0.37 -0.61 16 21 C -0.66 -5.98 5.66 -39.59 -0.22 -6.20 16 22 S 2.50 18.94 5.80 -107.50 -0.62 18.32 16 23 C -0.65 -1.82 10.80 101.05 1.09 -0.73 16 24 O -0.94 -10.07 17.13 -57.54 -0.99 -11.05 16 25 O -0.94 -10.48 17.12 -57.54 -0.98 -11.46 16 26 C -0.03 -0.25 9.47 -39.58 -0.37 -0.62 16 27 C -0.10 -1.13 7.93 -39.58 -0.31 -1.44 16 28 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.07 0.42 7.56 -51.93 -0.39 0.02 16 30 H 0.07 0.49 7.39 -51.93 -0.38 0.11 16 31 H 0.40 4.01 7.89 -40.82 -0.32 3.68 16 32 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 33 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 39 H 0.13 0.86 7.95 -52.49 -0.42 0.44 16 40 H 0.14 0.94 7.57 -52.49 -0.40 0.54 16 41 H 0.13 0.16 8.14 -51.92 -0.42 -0.26 16 42 H 0.13 0.19 8.14 -51.92 -0.42 -0.23 16 43 H 0.13 0.19 8.14 -51.92 -0.42 -0.23 16 44 H 0.14 1.16 7.56 -52.49 -0.40 0.77 16 45 H 0.13 1.39 7.52 -52.49 -0.39 1.00 16 LS Contribution 390.25 15.07 5.88 5.88 Total: -1.00 -38.71 390.25 -9.89 -48.60 By element: Atomic # 1 Polarization: 5.34 SS G_CDS: -6.88 Total: -1.54 kcal Atomic # 6 Polarization: -18.08 SS G_CDS: -1.77 Total: -19.85 kcal Atomic # 7 Polarization: -36.12 SS G_CDS: 0.41 Total: -35.72 kcal Atomic # 8 Polarization: -30.08 SS G_CDS: -1.89 Total: -31.97 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.27 kcal Atomic # 16 Polarization: 18.94 SS G_CDS: -0.62 Total: 18.32 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -38.71 -9.89 -48.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084541828.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.697 kcal (2) G-P(sol) polarization free energy of solvation -38.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds