Wall clock time and date at job start Tue Mar 31 2020 23:55:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.46821 * 2 1 4 4 C 1.50700 * 109.47101 * 240.00390 * 2 1 3 5 5 O 1.21274 * 120.00002 * 239.99670 * 4 2 1 6 6 N 1.34783 * 119.99891 * 59.99657 * 4 2 1 7 7 C 1.46498 * 119.99571 * 180.02562 * 6 4 2 8 8 C 1.53007 * 109.46853 * 180.02562 * 7 6 4 9 9 C 1.53000 * 109.46783 * 179.97438 * 8 7 6 10 10 C 1.50703 * 109.46711 * 179.97438 * 9 8 7 11 11 H 1.08002 * 120.00151 * 359.97438 * 10 9 8 12 12 C 1.37877 * 120.00079 * 180.02562 * 10 9 8 13 13 N 1.31514 * 120.00035 * 359.97438 * 12 10 9 14 14 Si 1.86802 * 120.00015 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47163 * 359.97438 * 14 12 10 16 16 H 1.48498 * 109.47252 * 119.99829 * 14 12 10 17 17 H 1.48507 * 109.46514 * 239.99617 * 14 12 10 18 18 C 1.50690 * 109.47450 * 120.00033 * 2 1 3 19 19 C 1.38235 * 120.00265 * 240.00000 * 18 2 1 20 20 C 1.38241 * 120.00144 * 180.02562 * 19 18 2 21 21 C 1.38228 * 119.99681 * 359.97438 * 20 19 18 22 22 S 1.76203 * 119.99649 * 179.97438 * 21 20 19 23 23 C 1.81404 * 104.44838 * 90.00553 * 22 21 20 24 24 O 1.42100 * 104.28012 * 333.93528 * 22 21 20 25 25 O 1.42100 * 104.27885 * 206.07639 * 22 21 20 26 26 C 1.38234 * 120.00757 * 0.25984 * 21 20 19 27 27 C 1.38235 * 120.00049 * 60.02472 * 18 2 1 28 28 H 1.09000 * 109.46884 * 299.99539 * 1 2 3 29 29 H 1.08996 * 109.47353 * 60.00044 * 1 2 3 30 30 H 1.09005 * 109.46821 * 179.97438 * 1 2 3 31 31 H 0.96995 * 119.99756 * 0.02562 * 6 4 2 32 32 H 1.09005 * 109.47337 * 299.99270 * 7 6 4 33 33 H 1.08996 * 109.47621 * 60.00263 * 7 6 4 34 34 H 1.09005 * 109.46346 * 299.99624 * 8 7 6 35 35 H 1.08991 * 109.47119 * 59.99145 * 8 7 6 36 36 H 1.08996 * 109.47427 * 299.99201 * 9 8 7 37 37 H 1.08996 * 109.47528 * 60.00110 * 9 8 7 38 38 H 0.96997 * 120.00477 * 180.02562 * 13 12 10 39 39 H 1.07998 * 120.00298 * 0.02562 * 19 18 2 40 40 H 1.07998 * 119.99727 * 179.97438 * 20 19 18 41 41 H 1.09002 * 109.47124 * 299.99881 * 23 22 21 42 42 H 1.09001 * 109.46975 * 180.02562 * 23 22 21 43 43 H 1.09004 * 109.47147 * 59.99966 * 23 22 21 44 44 H 1.08001 * 120.00506 * 179.72371 * 26 21 20 45 45 H 1.08000 * 120.00004 * 359.97438 * 27 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 8 2.7296 -1.6963 -1.1193 6 7 1.7066 -0.2498 -2.4546 7 6 2.1945 -0.9407 -3.6508 8 6 1.6851 -0.2189 -4.9000 9 6 2.1952 -0.9401 -6.1493 10 6 1.6928 -0.2296 -7.3797 11 1 1.0716 0.6483 -7.2806 12 6 2.0255 -0.7008 -8.6320 13 7 2.7816 -1.7701 -8.7528 14 14 1.4035 0.1803 -10.1572 15 1 0.5789 1.3473 -9.7529 16 1 2.5587 0.6462 -10.9655 17 1 0.5778 -0.7526 -10.9655 18 6 2.0324 -0.7104 1.2304 19 6 2.8271 -0.0386 2.1403 20 6 3.2884 -0.6904 3.2687 21 6 2.9545 -2.0138 3.4874 22 16 3.5430 -2.8449 4.9253 23 6 2.2607 -2.5514 6.1744 24 8 4.7375 -2.1541 5.2652 25 8 3.5705 -4.2155 4.5514 26 6 2.1638 -2.6871 2.5751 27 6 1.6989 -2.0340 1.4489 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.1493 0.5390 -2.5435 32 1 3.2846 -0.9410 -3.6511 33 1 1.8309 -1.9682 -3.6507 34 1 0.5950 -0.2183 -4.9000 35 1 2.0490 0.8084 -4.8999 36 1 3.2851 -0.9404 -6.1491 37 1 1.8315 -1.9676 -6.1496 38 1 3.0160 -2.1014 -9.6338 39 1 3.0877 0.9955 1.9697 40 1 3.9097 -0.1657 3.9794 41 1 2.1528 -1.4794 6.3395 42 1 2.5457 -3.0356 7.1085 43 1 1.3132 -2.9625 5.8260 44 1 1.9066 -3.7224 2.7437 45 1 1.0780 -2.5588 0.7380 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084541828.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:55:50 Heat of formation + Delta-G solvation = -127.812812 kcal Electronic energy + Delta-G solvation = -26000.558624 eV Core-core repulsion = 22108.566579 eV Total energy + Delta-G solvation = -3891.992045 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.43459 -39.84410 -38.14261 -37.02863 -36.96036 -35.45275 -35.12775 -33.00517 -32.05292 -30.85282 -30.17639 -28.57493 -26.05389 -25.01051 -23.88800 -23.10105 -22.33490 -20.85659 -20.02268 -18.83720 -18.57917 -18.06728 -17.35280 -17.12433 -17.00614 -16.71016 -16.50494 -16.11851 -15.84147 -15.52506 -15.29323 -14.93611 -14.49669 -14.28828 -14.20186 -13.93020 -13.90989 -13.83137 -13.71975 -13.57996 -13.23167 -13.14763 -13.04364 -12.86419 -12.76488 -12.56158 -12.45624 -12.33128 -12.08598 -12.01640 -11.69512 -11.58734 -11.56018 -11.23319 -10.80281 -10.57817 -10.14286 -10.12142 -9.97908 -8.20905 -6.32674 -0.84971 -0.20628 0.34314 1.41161 1.41258 1.54526 1.58716 1.91620 2.10650 2.40867 2.54906 3.05856 3.13040 3.19329 3.41197 3.65740 3.88112 3.94996 4.09215 4.12807 4.16305 4.19332 4.19844 4.29265 4.36188 4.52958 4.53240 4.73352 4.80763 4.85310 4.92231 4.97356 4.97911 4.99622 5.08884 5.13997 5.15572 5.25509 5.41543 5.47559 5.51491 5.68649 5.82697 5.86008 6.20312 6.55305 6.85481 7.23324 7.37306 8.91415 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.029986 B = 0.001699 C = 0.001655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.558569 B =16480.311575 C =16910.878765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.071 4.071 3 H 0.140 0.860 4 C 0.508 3.492 5 O -0.584 6.584 6 N -0.710 5.710 7 C 0.130 3.870 8 C -0.100 4.100 9 C 0.022 3.978 10 C -0.539 4.539 11 H 0.069 0.931 12 C -0.006 4.006 13 N -0.936 5.936 14 Si 0.969 3.031 15 H -0.256 1.256 16 H -0.281 1.281 17 H -0.281 1.281 18 C -0.025 4.025 19 C -0.136 4.136 20 C -0.036 4.036 21 C -0.665 4.665 22 S 2.501 3.499 23 C -0.619 4.619 24 O -0.978 6.978 25 O -0.984 6.984 26 C -0.042 4.042 27 C -0.124 4.124 28 H 0.093 0.907 29 H 0.084 0.916 30 H 0.053 0.947 31 H 0.417 0.583 32 H 0.045 0.955 33 H 0.047 0.953 34 H 0.070 0.930 35 H 0.069 0.931 36 H -0.010 1.010 37 H -0.009 1.009 38 H 0.263 0.737 39 H 0.160 0.840 40 H 0.161 0.839 41 H 0.158 0.842 42 H 0.154 0.846 43 H 0.153 0.847 44 H 0.146 0.854 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.215 7.109 33.528 35.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.092 4.092 3 H 0.158 0.842 4 C 0.295 3.705 5 O -0.463 6.463 6 N -0.363 5.363 7 C 0.006 3.994 8 C -0.138 4.138 9 C -0.016 4.016 10 C -0.577 4.577 11 H 0.087 0.913 12 C -0.203 4.203 13 N -0.576 5.576 14 Si 0.793 3.207 15 H -0.180 1.180 16 H -0.207 1.207 17 H -0.206 1.206 18 C -0.026 4.026 19 C -0.154 4.154 20 C -0.055 4.055 21 C -0.751 4.751 22 S 2.685 3.315 23 C -0.773 4.773 24 O -0.975 6.975 25 O -0.982 6.982 26 C -0.061 4.061 27 C -0.142 4.142 28 H 0.112 0.888 29 H 0.103 0.897 30 H 0.072 0.928 31 H 0.255 0.745 32 H 0.063 0.937 33 H 0.065 0.935 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.008 0.992 37 H 0.009 0.991 38 H 0.072 0.928 39 H 0.177 0.823 40 H 0.178 0.822 41 H 0.177 0.823 42 H 0.172 0.828 43 H 0.171 0.829 44 H 0.163 0.837 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -6.865 5.848 33.502 34.695 hybrid contribution -0.598 0.364 -1.770 1.904 sum -7.463 6.213 31.732 33.184 Atomic orbital electron populations 1.21846 0.89430 1.03290 1.05052 1.20505 0.99691 1.01129 0.87847 0.84182 1.21143 0.79593 0.84269 0.85502 1.90737 1.39760 1.28487 1.87347 1.45933 1.53289 1.32279 1.04757 1.21204 0.98092 0.95905 0.84213 1.21588 1.00862 0.99359 0.92019 1.18962 0.94893 0.94918 0.92839 1.21718 1.31488 1.12695 0.91843 0.91331 1.26057 0.95322 0.95824 1.03101 1.70123 1.38281 1.24809 1.24434 0.85344 0.78141 0.78728 0.78478 1.18007 1.20671 1.20637 1.19907 0.94431 0.94049 0.94171 1.21502 0.97716 1.01886 0.94331 1.21207 0.94539 0.92131 0.97594 1.30622 1.15066 1.07282 1.22169 1.04960 0.77012 0.73239 0.76284 1.29997 1.16979 1.14794 1.15523 1.93531 1.44570 1.75141 1.84241 1.93537 1.87643 1.34054 1.82919 1.21058 0.92712 0.99671 0.92662 1.21173 1.01026 0.94841 0.97207 0.88839 0.89717 0.92759 0.74532 0.93669 0.93469 0.91097 0.91219 0.99182 0.99104 0.92846 0.82257 0.82175 0.82346 0.82818 0.82851 0.83653 0.86133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 8.90 71.98 0.64 -0.89 16 2 C -0.07 -1.14 2.90 -12.29 -0.04 -1.18 16 3 H 0.14 1.40 7.88 -2.38 -0.02 1.38 16 4 C 0.51 13.44 7.02 87.66 0.62 14.06 16 5 O -0.58 -21.63 15.11 -3.01 -0.05 -21.67 16 6 N -0.71 -17.84 5.45 -463.05 -2.52 -20.36 16 7 C 0.13 4.48 5.67 86.38 0.49 4.97 16 8 C -0.10 -3.75 5.27 30.60 0.16 -3.59 16 9 C 0.02 1.12 4.97 29.85 0.15 1.27 16 10 C -0.54 -29.84 9.11 25.60 0.23 -29.60 16 11 H 0.07 3.54 7.74 -2.91 -0.02 3.51 16 12 C -0.01 -0.32 5.46 84.65 0.46 0.15 16 13 N -0.94 -57.31 13.29 21.45 0.28 -57.02 16 14 Si 0.97 43.52 29.54 68.60 2.03 45.55 16 15 H -0.26 -10.73 7.11 99.48 0.71 -10.03 16 16 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 17 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 18 C -0.03 -0.49 4.40 -19.87 -0.09 -0.57 16 19 C -0.14 -2.18 9.67 22.27 0.22 -1.96 16 20 C -0.04 -0.58 9.47 22.27 0.21 -0.37 16 21 C -0.67 -11.79 5.66 22.27 0.13 -11.66 16 22 S 2.50 36.72 5.80 -56.49 -0.33 36.39 16 23 C -0.62 -1.33 10.80 113.37 1.22 -0.10 16 24 O -0.98 -20.84 17.13 -127.65 -2.19 -23.03 16 25 O -0.98 -22.88 17.12 -127.65 -2.19 -25.07 16 26 C -0.04 -0.87 9.47 22.27 0.21 -0.65 16 27 C -0.12 -2.74 7.93 22.27 0.18 -2.57 16 28 H 0.09 0.64 8.14 -2.39 -0.02 0.63 16 29 H 0.08 0.71 7.56 -2.39 -0.02 0.69 16 30 H 0.05 0.74 7.39 -2.38 -0.02 0.73 16 31 H 0.42 7.29 7.89 -92.71 -0.73 6.56 16 32 H 0.04 1.73 8.14 -2.38 -0.02 1.71 16 33 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.07 2.43 8.14 -2.38 -0.02 2.41 16 35 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 36 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 37 H -0.01 -0.54 8.14 -2.39 -0.02 -0.55 16 38 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 39 H 0.16 1.55 7.95 -2.91 -0.02 1.52 16 40 H 0.16 1.84 7.57 -2.91 -0.02 1.82 16 41 H 0.16 -0.34 8.14 -2.39 -0.02 -0.36 16 42 H 0.15 -0.18 8.14 -2.39 -0.02 -0.20 16 43 H 0.15 -0.14 8.14 -2.39 -0.02 -0.16 16 44 H 0.15 2.62 7.56 -2.91 -0.02 2.60 16 45 H 0.12 2.78 7.52 -2.91 -0.02 2.75 16 Total: -1.00 -88.48 390.25 0.09 -88.38 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: 0.26 Total: 9.53 kcal Atomic # 6 Polarization: -37.50 SS G_CDS: 4.79 Total: -32.71 kcal Atomic # 7 Polarization: -75.14 SS G_CDS: -2.24 Total: -77.38 kcal Atomic # 8 Polarization: -65.35 SS G_CDS: -4.42 Total: -69.76 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.55 kcal Atomic # 16 Polarization: 36.72 SS G_CDS: -0.33 Total: 36.39 kcal Total: -88.48 0.09 -88.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084541828.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.429 kcal (2) G-P(sol) polarization free energy of solvation -88.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds