Wall clock time and date at job start Tue Mar 31 2020 23:59:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.46955 * 2 1 4 4 C 1.53005 * 109.46700 * 240.00585 * 2 1 3 5 5 C 1.50705 * 109.46767 * 174.99709 * 4 2 1 6 6 O 1.21252 * 119.99860 * 0.02562 * 5 4 2 7 7 C 1.47172 * 120.00138 * 179.97438 * 5 4 2 8 8 C 1.39858 * 120.16808 * 359.71940 * 7 5 4 9 9 C 1.37882 * 119.82272 * 179.80868 * 8 7 5 10 10 C 1.38406 * 120.17114 * 0.45256 * 9 8 7 11 11 C 1.38397 * 120.35181 * 359.78454 * 10 9 8 12 12 C 1.37895 * 120.16987 * 359.97438 * 11 10 9 13 13 N 1.46499 * 109.47537 * 120.00652 * 2 1 3 14 14 S 1.65593 * 119.99833 * 265.00113 * 13 2 1 15 15 O 1.42104 * 104.27905 * 308.92754 * 14 13 2 16 16 O 1.42102 * 104.27718 * 181.06534 * 14 13 2 17 17 C 1.81399 * 104.45079 * 64.99683 * 14 13 2 18 18 C 1.53005 * 109.47445 * 179.97438 * 17 14 13 19 19 C 1.52996 * 109.47245 * 179.97438 * 18 17 14 20 20 C 1.50703 * 109.46946 * 180.02562 * 19 18 17 21 21 H 1.08005 * 119.99876 * 0.02562 * 20 19 18 22 22 C 1.37874 * 119.99789 * 179.97438 * 20 19 18 23 23 N 1.31514 * 120.00287 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99733 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.47443 * 0.02562 * 24 22 20 26 26 H 1.48504 * 109.46979 * 120.00261 * 24 22 20 27 27 H 1.48498 * 109.47371 * 240.00161 * 24 22 20 28 28 H 1.09007 * 109.46559 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47034 * 299.99249 * 1 2 3 30 30 H 1.08996 * 109.46994 * 59.99659 * 1 2 3 31 31 H 1.08997 * 109.47198 * 294.99655 * 4 2 1 32 32 H 1.08997 * 109.47284 * 54.99992 * 4 2 1 33 33 H 1.08000 * 120.08998 * 0.03150 * 8 7 5 34 34 H 1.08003 * 119.91267 * 180.21155 * 9 8 7 35 35 H 1.08003 * 119.82248 * 179.76239 * 10 9 8 36 36 H 1.08000 * 119.92185 * 179.97438 * 11 10 9 37 37 H 1.08005 * 120.08265 * 179.97438 * 12 11 10 38 38 H 0.97001 * 119.99882 * 84.99585 * 13 2 1 39 39 H 1.09001 * 109.47190 * 299.99797 * 17 14 13 40 40 H 1.09004 * 109.47089 * 59.99930 * 17 14 13 41 41 H 1.09001 * 109.46962 * 300.00183 * 18 17 14 42 42 H 1.09004 * 109.46832 * 60.00020 * 18 17 14 43 43 H 1.09001 * 109.47372 * 300.00032 * 19 18 17 44 44 H 1.09004 * 109.47108 * 60.00288 * 19 18 17 45 45 H 0.96996 * 120.00180 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 3.5419 -0.6148 -1.3129 6 8 4.1449 -0.0212 -0.4444 7 6 4.2768 -1.2322 -2.4285 8 6 3.5855 -1.9237 -3.4285 9 6 4.2808 -2.4960 -4.4725 10 6 5.6602 -2.3957 -4.5275 11 6 6.3520 -1.7175 -3.5392 12 6 5.6705 -1.1354 -2.4912 13 7 2.0185 -0.6907 1.1960 14 16 2.4123 0.1769 2.5504 15 8 3.2875 1.1905 2.0750 16 8 2.8607 -0.8032 3.4764 17 6 0.8409 0.8986 3.0985 18 6 1.0752 1.7336 4.3590 19 6 -0.2501 2.3428 4.8209 20 6 -0.0191 3.1658 6.0620 21 1 0.9738 3.2466 6.4794 22 6 -1.0750 3.8164 6.6642 23 7 -2.2840 3.7184 6.1557 24 14 -0.7888 4.8359 8.2030 25 1 0.6491 4.7849 8.5704 26 1 -1.1835 6.2440 7.9444 27 1 -1.6045 4.2900 9.3174 28 1 -0.3633 -1.0278 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.7516 -1.7714 -1.2058 32 1 1.6053 -0.2616 -2.1370 33 1 2.5095 -2.0059 -3.3850 34 1 3.7481 -3.0274 -5.2473 35 1 6.1995 -2.8495 -5.3458 36 1 7.4283 -1.6438 -3.5887 37 1 6.2118 -0.6067 -1.7205 38 1 2.1111 -1.6563 1.1946 39 1 0.4388 1.5350 2.3102 40 1 0.1317 0.1006 3.3184 41 1 1.4771 1.0969 5.1471 42 1 1.7846 2.5317 4.1394 43 1 -0.6516 2.9797 4.0326 44 1 -0.9597 1.5451 5.0403 45 1 -3.0268 4.1765 6.5791 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084636965.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:59:43 Heat of formation + Delta-G solvation = -102.041905 kcal Electronic energy + Delta-G solvation = -26686.019811 eV Core-core repulsion = 22795.145276 eV Total energy + Delta-G solvation = -3890.874535 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.40768 -38.63585 -36.81676 -36.38424 -35.53241 -34.62833 -32.25009 -32.16312 -31.36330 -30.57561 -28.48079 -27.66208 -24.31887 -23.64951 -22.93414 -21.72359 -20.62935 -20.01511 -19.19458 -17.68215 -17.49235 -16.63962 -16.39982 -16.11369 -15.71793 -15.61914 -15.32368 -14.80028 -14.71871 -14.45960 -14.35430 -14.11831 -13.92241 -13.38977 -13.19366 -12.99696 -12.68035 -12.38730 -12.25625 -12.13772 -12.08296 -11.79794 -11.69820 -11.65120 -11.51570 -11.43324 -11.23616 -11.07400 -10.91288 -10.75727 -10.36352 -9.95011 -9.90988 -9.61828 -9.43053 -9.36582 -9.27736 -9.02944 -8.39020 -6.03873 -4.06440 0.33406 0.61138 0.94453 2.17330 2.97459 3.30914 3.38325 3.42349 3.43819 3.61872 4.11290 4.30978 4.40565 4.44743 4.50128 4.57576 4.60180 4.76369 4.81694 4.95682 5.03048 5.06141 5.20752 5.21291 5.25000 5.28157 5.32688 5.40121 5.45574 5.55956 5.58733 5.88319 5.89226 5.97760 6.00577 6.04833 6.08401 6.32639 6.45554 6.50728 6.91508 7.00398 7.36593 7.59846 7.70067 7.94712 8.35731 9.00096 9.58174 11.07407 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.029763 B = 0.002099 C = 0.002033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.539238 B =13338.738507 C =13768.301215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.153 3.847 3 H 0.100 0.900 4 C -0.168 4.168 5 C 0.379 3.621 6 O -0.415 6.415 7 C -0.165 4.165 8 C -0.077 4.077 9 C -0.134 4.134 10 C -0.093 4.093 11 C -0.132 4.132 12 C -0.064 4.064 13 N -1.115 6.115 14 S 2.600 3.400 15 O -0.946 6.946 16 O -0.968 6.968 17 C -0.615 4.615 18 C -0.105 4.105 19 C 0.031 3.969 20 C -0.524 4.524 21 H 0.059 0.941 22 C 0.057 3.943 23 N -0.896 5.896 24 Si 0.894 3.106 25 H -0.271 1.271 26 H -0.284 1.284 27 H -0.284 1.284 28 H 0.065 0.935 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.105 0.895 32 H 0.111 0.889 33 H 0.132 0.868 34 H 0.128 0.872 35 H 0.125 0.875 36 H 0.128 0.872 37 H 0.135 0.865 38 H 0.411 0.589 39 H 0.126 0.874 40 H 0.127 0.873 41 H 0.064 0.936 42 H 0.065 0.935 43 H 0.020 0.980 44 H 0.020 0.980 45 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.271 -14.792 -25.721 31.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.045 3.955 3 H 0.118 0.882 4 C -0.207 4.207 5 C 0.254 3.746 6 O -0.287 6.287 7 C -0.166 4.166 8 C -0.095 4.095 9 C -0.152 4.152 10 C -0.112 4.112 11 C -0.150 4.150 12 C -0.082 4.082 13 N -0.871 5.871 14 S 2.695 3.305 15 O -0.935 6.935 16 O -0.959 6.959 17 C -0.746 4.746 18 C -0.145 4.145 19 C -0.008 4.008 20 C -0.563 4.563 21 H 0.077 0.923 22 C -0.145 4.145 23 N -0.535 5.535 24 Si 0.722 3.278 25 H -0.196 1.196 26 H -0.210 1.210 27 H -0.210 1.210 28 H 0.084 0.916 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.123 0.877 32 H 0.129 0.871 33 H 0.150 0.850 34 H 0.146 0.854 35 H 0.143 0.857 36 H 0.146 0.854 37 H 0.153 0.847 38 H 0.244 0.756 39 H 0.145 0.855 40 H 0.145 0.855 41 H 0.083 0.917 42 H 0.084 0.916 43 H 0.039 0.961 44 H 0.038 0.962 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 10.295 -14.142 -24.869 30.404 hybrid contribution -0.759 0.073 0.510 0.918 sum 9.536 -14.069 -24.358 29.702 Atomic orbital electron populations 1.22499 0.94644 1.03271 1.03609 1.20616 0.93658 0.97357 0.83832 0.88242 1.22354 0.94435 1.03787 1.00091 1.22471 0.91172 0.77263 0.83701 1.90711 1.71077 1.31196 1.35688 1.20653 0.94753 1.03031 0.98142 1.21473 1.00183 0.94944 0.92915 1.21156 0.94475 1.00801 0.98795 1.21434 0.94571 0.97005 0.98151 1.21198 1.00427 0.98699 0.94697 1.21523 0.93352 0.95890 0.97411 1.55721 1.84337 1.19296 1.27780 1.05356 0.77414 0.74710 0.73026 1.93603 1.60997 1.60073 1.78856 1.93562 1.80071 1.59431 1.62794 1.30712 1.21576 1.12139 1.10144 1.21488 1.03520 0.97713 0.91762 1.19064 0.89875 0.95618 0.96209 1.21311 0.94646 1.29756 1.10569 0.92311 1.25022 0.95146 0.96656 0.97625 1.69966 0.99509 1.43606 1.40405 0.86501 0.78432 0.79929 0.82968 1.19593 1.20964 1.20963 0.91561 0.91036 0.91040 0.87721 0.87116 0.85000 0.85445 0.85671 0.85416 0.84740 0.75609 0.85536 0.85457 0.91682 0.91592 0.96143 0.96157 0.92998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.37 9.48 37.16 0.35 -1.02 16 2 C 0.15 1.44 2.37 -67.93 -0.16 1.28 16 3 H 0.10 1.11 7.29 -51.93 -0.38 0.73 16 4 C -0.17 -1.14 3.92 -27.88 -0.11 -1.25 16 5 C 0.38 3.87 6.98 -30.68 -0.21 3.66 16 6 O -0.41 -6.11 14.79 5.01 0.07 -6.03 16 7 C -0.16 -1.45 5.87 -105.06 -0.62 -2.06 16 8 C -0.08 -0.47 9.47 -39.11 -0.37 -0.84 16 9 C -0.13 -0.74 10.03 -39.65 -0.40 -1.14 16 10 C -0.09 -0.54 10.04 -39.46 -0.40 -0.94 16 11 C -0.13 -0.93 10.03 -39.65 -0.40 -1.33 16 12 C -0.06 -0.58 9.60 -39.11 -0.38 -0.95 16 13 N -1.11 -12.72 4.50 -4.89 -0.02 -12.75 16 14 S 2.60 41.62 5.44 -107.50 -0.58 41.03 16 15 O -0.95 -18.24 16.84 -59.65 -1.00 -19.25 16 16 O -0.97 -18.41 18.08 -57.54 -1.04 -19.46 16 17 C -0.61 -9.83 5.22 37.16 0.19 -9.64 16 18 C -0.11 -2.21 5.16 -26.73 -0.14 -2.35 16 19 C 0.03 0.79 4.97 -27.88 -0.14 0.65 16 20 C -0.52 -15.01 9.11 -34.44 -0.31 -15.33 16 21 H 0.06 1.64 7.74 -52.48 -0.41 1.23 16 22 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 23 N -0.90 -26.77 13.29 55.43 0.74 -26.03 16 24 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16 25 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 26 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 27 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 28 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.07 0.64 5.78 -51.93 -0.30 0.34 16 30 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.10 0.47 8.08 -51.93 -0.42 0.05 16 32 H 0.11 0.46 8.10 -51.93 -0.42 0.04 16 33 H 0.13 0.46 7.05 -52.49 -0.37 0.09 16 34 H 0.13 0.41 8.06 -52.48 -0.42 -0.02 16 35 H 0.13 0.44 8.06 -52.48 -0.42 0.02 16 36 H 0.13 0.66 8.06 -52.49 -0.42 0.23 16 37 H 0.13 1.32 7.65 -52.48 -0.40 0.92 16 38 H 0.41 3.85 8.80 -34.47 -0.30 3.54 16 39 H 0.13 1.78 6.77 -51.92 -0.35 1.43 16 40 H 0.13 1.81 8.14 -51.92 -0.42 1.38 16 41 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 42 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 43 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 45 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 388.24 15.07 5.85 5.85 Total: -1.00 -38.56 388.24 -10.91 -49.46 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: -6.71 Total: 0.04 kcal Atomic # 6 Polarization: -26.54 SS G_CDS: -3.18 Total: -29.71 kcal Atomic # 7 Polarization: -39.49 SS G_CDS: 0.71 Total: -38.78 kcal Atomic # 8 Polarization: -42.77 SS G_CDS: -1.97 Total: -44.74 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Atomic # 16 Polarization: 41.62 SS G_CDS: -0.58 Total: 41.03 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -38.56 -10.91 -49.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084636965.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.579 kcal (2) G-P(sol) polarization free energy of solvation -38.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds