Wall clock time and date at job start Tue Mar 31 2020 23:59:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.46955 * 2 1 4 4 C 1.53005 * 109.46700 * 240.00585 * 2 1 3 5 5 C 1.50705 * 109.46767 * 174.99709 * 4 2 1 6 6 O 1.21252 * 119.99860 * 0.02562 * 5 4 2 7 7 C 1.47172 * 120.00138 * 179.97438 * 5 4 2 8 8 C 1.39858 * 120.16808 * 359.71940 * 7 5 4 9 9 C 1.37882 * 119.82272 * 179.80868 * 8 7 5 10 10 C 1.38406 * 120.17114 * 0.45256 * 9 8 7 11 11 C 1.38397 * 120.35181 * 359.78454 * 10 9 8 12 12 C 1.37895 * 120.16987 * 359.97438 * 11 10 9 13 13 N 1.46499 * 109.47537 * 120.00652 * 2 1 3 14 14 S 1.65593 * 119.99833 * 265.00113 * 13 2 1 15 15 O 1.42104 * 104.27905 * 308.92754 * 14 13 2 16 16 O 1.42102 * 104.27718 * 181.06534 * 14 13 2 17 17 C 1.81399 * 104.45079 * 64.99683 * 14 13 2 18 18 C 1.53005 * 109.47445 * 179.97438 * 17 14 13 19 19 C 1.52996 * 109.47245 * 179.97438 * 18 17 14 20 20 C 1.50703 * 109.46946 * 180.02562 * 19 18 17 21 21 H 1.08005 * 119.99876 * 0.02562 * 20 19 18 22 22 C 1.37874 * 119.99789 * 179.97438 * 20 19 18 23 23 N 1.31514 * 120.00287 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99733 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.47443 * 0.02562 * 24 22 20 26 26 H 1.48504 * 109.46979 * 120.00261 * 24 22 20 27 27 H 1.48498 * 109.47371 * 240.00161 * 24 22 20 28 28 H 1.09007 * 109.46559 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47034 * 299.99249 * 1 2 3 30 30 H 1.08996 * 109.46994 * 59.99659 * 1 2 3 31 31 H 1.08997 * 109.47198 * 294.99655 * 4 2 1 32 32 H 1.08997 * 109.47284 * 54.99992 * 4 2 1 33 33 H 1.08000 * 120.08998 * 0.03150 * 8 7 5 34 34 H 1.08003 * 119.91267 * 180.21155 * 9 8 7 35 35 H 1.08003 * 119.82248 * 179.76239 * 10 9 8 36 36 H 1.08000 * 119.92185 * 179.97438 * 11 10 9 37 37 H 1.08005 * 120.08265 * 179.97438 * 12 11 10 38 38 H 0.97001 * 119.99882 * 84.99585 * 13 2 1 39 39 H 1.09001 * 109.47190 * 299.99797 * 17 14 13 40 40 H 1.09004 * 109.47089 * 59.99930 * 17 14 13 41 41 H 1.09001 * 109.46962 * 300.00183 * 18 17 14 42 42 H 1.09004 * 109.46832 * 60.00020 * 18 17 14 43 43 H 1.09001 * 109.47372 * 300.00032 * 19 18 17 44 44 H 1.09004 * 109.47108 * 60.00288 * 19 18 17 45 45 H 0.96996 * 120.00180 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 3.5419 -0.6148 -1.3129 6 8 4.1449 -0.0212 -0.4444 7 6 4.2768 -1.2322 -2.4285 8 6 3.5855 -1.9237 -3.4285 9 6 4.2808 -2.4960 -4.4725 10 6 5.6602 -2.3957 -4.5275 11 6 6.3520 -1.7175 -3.5392 12 6 5.6705 -1.1354 -2.4912 13 7 2.0185 -0.6907 1.1960 14 16 2.4123 0.1769 2.5504 15 8 3.2875 1.1905 2.0750 16 8 2.8607 -0.8032 3.4764 17 6 0.8409 0.8986 3.0985 18 6 1.0752 1.7336 4.3590 19 6 -0.2501 2.3428 4.8209 20 6 -0.0191 3.1658 6.0620 21 1 0.9738 3.2466 6.4794 22 6 -1.0750 3.8164 6.6642 23 7 -2.2840 3.7184 6.1557 24 14 -0.7888 4.8359 8.2030 25 1 0.6491 4.7849 8.5704 26 1 -1.1835 6.2440 7.9444 27 1 -1.6045 4.2900 9.3174 28 1 -0.3633 -1.0278 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.7516 -1.7714 -1.2058 32 1 1.6053 -0.2616 -2.1370 33 1 2.5095 -2.0059 -3.3850 34 1 3.7481 -3.0274 -5.2473 35 1 6.1995 -2.8495 -5.3458 36 1 7.4283 -1.6438 -3.5887 37 1 6.2118 -0.6067 -1.7205 38 1 2.1111 -1.6563 1.1946 39 1 0.4388 1.5350 2.3102 40 1 0.1317 0.1006 3.3184 41 1 1.4771 1.0969 5.1471 42 1 1.7846 2.5317 4.1394 43 1 -0.6516 2.9797 4.0326 44 1 -0.9597 1.5451 5.0403 45 1 -3.0268 4.1765 6.5791 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084636965.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:59:42 Heat of formation + Delta-G solvation = -129.073167 kcal Electronic energy + Delta-G solvation = -26687.191975 eV Core-core repulsion = 22795.145276 eV Total energy + Delta-G solvation = -3892.046698 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.07980 -39.23809 -38.15005 -37.30232 -36.95025 -36.48288 -34.18510 -32.87253 -31.85988 -31.33708 -29.75850 -28.87360 -25.65583 -24.83352 -23.44913 -22.53641 -22.28460 -20.67606 -20.41663 -18.80971 -18.52497 -18.22645 -17.47277 -17.14280 -16.67111 -16.57078 -16.44924 -16.32471 -15.78514 -15.50634 -15.26858 -14.99243 -14.54771 -14.41589 -14.19469 -14.09090 -13.87021 -13.57850 -13.48487 -13.23509 -13.13414 -13.07627 -12.98364 -12.78225 -12.76141 -12.60107 -12.56072 -12.34646 -12.12883 -12.01265 -11.83142 -11.75547 -11.37705 -11.12982 -10.66771 -10.58846 -10.30150 -9.92027 -9.89857 -8.23914 -6.34654 -0.69512 -0.24027 0.45452 1.38408 1.38987 1.52540 1.54702 1.85000 2.38867 2.82005 2.90427 3.00632 3.09309 3.29088 3.68883 3.75135 3.90716 3.92017 4.05674 4.15923 4.21362 4.25663 4.36721 4.37113 4.50776 4.51651 4.63382 4.70338 4.76041 4.80857 4.88545 4.96304 5.03573 5.04450 5.10394 5.30941 5.40426 5.43457 5.46648 5.53280 5.53740 5.61838 5.78200 5.99594 6.18517 6.19278 6.68494 6.80392 7.34405 8.87689 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.029763 B = 0.002099 C = 0.002033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.539238 B =13338.738507 C =13768.301215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.143 3.857 3 H 0.076 0.924 4 C -0.161 4.161 5 C 0.377 3.623 6 O -0.477 6.477 7 C -0.189 4.189 8 C -0.069 4.069 9 C -0.135 4.135 10 C -0.092 4.092 11 C -0.143 4.143 12 C -0.093 4.093 13 N -1.100 6.100 14 S 2.620 3.380 15 O -0.983 6.983 16 O -1.002 7.002 17 C -0.608 4.608 18 C -0.107 4.107 19 C 0.033 3.967 20 C -0.554 4.554 21 H 0.057 0.943 22 C 0.003 3.997 23 N -0.927 5.927 24 Si 0.963 3.037 25 H -0.266 1.266 26 H -0.275 1.275 27 H -0.275 1.275 28 H 0.086 0.914 29 H 0.054 0.946 30 H 0.093 0.907 31 H 0.139 0.861 32 H 0.148 0.852 33 H 0.166 0.834 34 H 0.159 0.841 35 H 0.151 0.849 36 H 0.138 0.862 37 H 0.109 0.891 38 H 0.423 0.577 39 H 0.146 0.854 40 H 0.149 0.851 41 H 0.062 0.938 42 H 0.062 0.938 43 H 0.005 0.995 44 H 0.005 0.995 45 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.974 -16.360 -28.071 33.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.036 3.964 3 H 0.094 0.906 4 C -0.199 4.199 5 C 0.256 3.744 6 O -0.354 6.354 7 C -0.190 4.190 8 C -0.086 4.086 9 C -0.152 4.152 10 C -0.110 4.110 11 C -0.161 4.161 12 C -0.111 4.111 13 N -0.861 5.861 14 S 2.715 3.285 15 O -0.972 6.972 16 O -0.992 6.992 17 C -0.739 4.739 18 C -0.146 4.146 19 C -0.005 4.005 20 C -0.592 4.592 21 H 0.076 0.924 22 C -0.195 4.195 23 N -0.567 5.567 24 Si 0.787 3.213 25 H -0.191 1.191 26 H -0.201 1.201 27 H -0.201 1.201 28 H 0.105 0.895 29 H 0.073 0.927 30 H 0.112 0.888 31 H 0.157 0.843 32 H 0.166 0.834 33 H 0.183 0.817 34 H 0.177 0.823 35 H 0.169 0.831 36 H 0.156 0.844 37 H 0.127 0.873 38 H 0.259 0.741 39 H 0.164 0.836 40 H 0.167 0.833 41 H 0.081 0.919 42 H 0.081 0.919 43 H 0.023 0.977 44 H 0.024 0.976 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 8.996 -15.729 -27.235 32.712 hybrid contribution -0.350 0.500 1.087 1.247 sum 8.646 -15.229 -26.148 31.470 Atomic orbital electron populations 1.22498 0.92592 1.04753 1.03940 1.20882 0.95140 0.96472 0.83906 0.90595 1.22468 0.91726 1.05834 0.99917 1.23175 0.92871 0.75464 0.82899 1.90704 1.72473 1.34177 1.37997 1.20721 0.94585 1.04641 0.99047 1.21835 1.01802 0.93300 0.91711 1.21602 0.94445 1.00098 0.99083 1.21819 0.95266 0.95874 0.98014 1.21384 1.01188 0.98890 0.94618 1.21544 0.94265 0.97301 0.98035 1.55269 1.84200 1.19695 1.26928 1.04425 0.76842 0.73964 0.73224 1.93562 1.62457 1.61628 1.79578 1.93506 1.80867 1.60177 1.64664 1.30630 1.22426 1.12465 1.08354 1.21314 1.00913 0.98260 0.94097 1.18947 0.91762 0.94755 0.95027 1.21765 0.94842 1.30639 1.11920 0.92449 1.25921 0.94853 0.97787 1.00943 1.70066 1.00330 1.44432 1.41913 0.85428 0.78580 0.78344 0.78899 1.19051 1.20086 1.20052 0.89478 0.92697 0.88784 0.84279 0.83400 0.81650 0.82308 0.83095 0.84421 0.87335 0.74108 0.83596 0.83323 0.91912 0.91946 0.97661 0.97648 0.92575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.17 9.48 71.98 0.68 -1.49 16 2 C 0.14 2.46 2.37 44.99 0.11 2.56 16 3 H 0.08 1.69 7.29 -2.39 -0.02 1.68 16 4 C -0.16 -1.71 3.92 29.85 0.12 -1.59 16 5 C 0.38 7.57 6.98 28.04 0.20 7.77 16 6 O -0.48 -14.95 14.79 -2.40 -0.04 -14.98 16 7 C -0.19 -3.19 5.87 -20.15 -0.12 -3.31 16 8 C -0.07 -0.62 9.47 22.58 0.21 -0.40 16 9 C -0.13 -0.98 10.03 22.23 0.22 -0.76 16 10 C -0.09 -0.84 10.04 22.35 0.22 -0.61 16 11 C -0.14 -1.97 10.03 22.23 0.22 -1.74 16 12 C -0.09 -1.81 9.60 22.58 0.22 -1.59 16 13 N -1.10 -24.27 4.50 -169.38 -0.76 -25.04 16 14 S 2.62 85.60 5.44 -56.49 -0.31 85.29 16 15 O -0.98 -39.68 16.84 -125.63 -2.12 -41.80 16 16 O -1.00 -38.93 18.08 -127.65 -2.31 -41.24 16 17 C -0.61 -19.45 5.22 71.98 0.38 -19.08 16 18 C -0.11 -4.59 5.16 30.59 0.16 -4.43 16 19 C 0.03 1.76 4.97 29.85 0.15 1.91 16 20 C -0.55 -32.28 9.11 25.60 0.23 -32.05 16 21 H 0.06 3.27 7.74 -2.91 -0.02 3.24 16 22 C 0.00 0.19 5.46 84.65 0.46 0.65 16 23 N -0.93 -55.92 13.29 21.45 0.28 -55.64 16 24 Si 0.96 44.99 29.54 68.60 2.03 47.02 16 25 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 26 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 27 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 28 H 0.09 0.71 8.14 -2.38 -0.02 0.70 16 29 H 0.05 0.86 5.78 -2.39 -0.01 0.85 16 30 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.14 0.57 8.08 -2.39 -0.02 0.55 16 32 H 0.15 0.54 8.10 -2.39 -0.02 0.52 16 33 H 0.17 0.27 7.05 -2.91 -0.02 0.25 16 34 H 0.16 0.18 8.06 -2.91 -0.02 0.16 16 35 H 0.15 0.55 8.06 -2.91 -0.02 0.53 16 36 H 0.14 1.44 8.06 -2.91 -0.02 1.42 16 37 H 0.11 2.53 7.65 -2.91 -0.02 2.51 16 38 H 0.42 7.35 8.80 -96.75 -0.85 6.50 16 39 H 0.15 4.08 6.77 -2.39 -0.02 4.06 16 40 H 0.15 4.09 8.14 -2.39 -0.02 4.07 16 41 H 0.06 2.68 8.14 -2.39 -0.02 2.66 16 42 H 0.06 2.68 8.14 -2.38 -0.02 2.66 16 43 H 0.00 0.28 8.14 -2.39 -0.02 0.26 16 44 H 0.01 0.28 8.14 -2.38 -0.02 0.26 16 45 H 0.27 14.93 8.31 -92.71 -0.77 14.16 16 Total: -1.00 -88.02 388.24 0.39 -87.64 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: 0.14 Total: 12.90 kcal Atomic # 6 Polarization: -57.62 SS G_CDS: 3.46 Total: -54.16 kcal Atomic # 7 Polarization: -80.20 SS G_CDS: -0.48 Total: -80.67 kcal Atomic # 8 Polarization: -93.56 SS G_CDS: -4.46 Total: -98.02 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.02 kcal Atomic # 16 Polarization: 85.60 SS G_CDS: -0.31 Total: 85.29 kcal Total: -88.02 0.39 -87.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084636965.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.436 kcal (2) G-P(sol) polarization free energy of solvation -88.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds