Wall clock time and date at job start Tue Mar 31 2020 22:23:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 C 1.81402 * 102.99764 * 2 1 4 4 C 1.53002 * 109.47083 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.46846 * 55.00116 * 4 3 2 6 6 O 1.42901 * 109.47176 * 295.00704 * 4 3 2 7 7 C 1.52996 * 109.47086 * 175.00122 * 4 3 2 8 8 N 1.46500 * 109.47128 * 184.99967 * 7 4 3 9 9 C 1.34774 * 120.00119 * 180.02562 * 8 7 4 10 10 O 1.21279 * 120.00124 * 359.97438 * 9 8 7 11 11 C 1.50703 * 119.99954 * 180.02562 * 9 8 7 12 12 C 1.50699 * 109.47027 * 179.97438 * 11 9 8 13 13 C 1.38328 * 119.96230 * 269.97567 * 12 11 9 14 14 C 1.38280 * 120.13484 * 180.02562 * 13 12 11 15 15 C 1.38120 * 120.07150 * 359.67534 * 14 13 12 16 16 C 1.38861 * 119.92830 * 0.59673 * 15 14 13 17 17 O 1.35751 * 120.06597 * 179.69892 * 16 15 14 18 18 C 1.34829 * 117.00376 * 354.17384 * 17 16 15 19 19 H 1.07998 * 119.99999 * 5.03596 * 18 17 16 20 20 C 1.38657 * 120.00083 * 185.03464 * 18 17 16 21 21 N 1.31555 * 119.99797 * 179.97438 * 20 18 17 22 22 Si 1.86799 * 119.99748 * 0.02562 * 20 18 17 23 23 H 1.48496 * 109.47410 * 90.00109 * 22 20 18 24 24 H 1.48504 * 109.46801 * 209.99865 * 22 20 18 25 25 H 1.48497 * 109.47495 * 329.99577 * 22 20 18 26 26 C 1.38073 * 119.96947 * 89.99413 * 12 11 9 27 27 H 1.09008 * 109.46729 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47123 * 299.99765 * 1 2 3 29 29 H 1.08999 * 109.47019 * 59.99853 * 1 2 3 30 30 H 1.09003 * 109.46898 * 60.00589 * 3 2 1 31 31 H 1.08996 * 109.47436 * 300.00346 * 3 2 1 32 32 H 1.09004 * 109.47003 * 179.97438 * 5 4 3 33 33 H 1.09001 * 109.47386 * 300.00129 * 5 4 3 34 34 H 1.09004 * 109.46807 * 60.00368 * 5 4 3 35 35 H 0.96700 * 113.99554 * 299.99307 * 6 4 3 36 36 H 1.09007 * 109.47155 * 65.00199 * 7 4 3 37 37 H 1.09003 * 109.47254 * 305.00245 * 7 4 3 38 38 H 0.97009 * 119.99766 * 0.02562 * 8 7 4 39 39 H 1.08993 * 109.47200 * 59.99691 * 11 9 8 40 40 H 1.09003 * 109.46989 * 299.99567 * 11 9 8 41 41 H 1.08001 * 119.93314 * 0.02562 * 13 12 11 42 42 H 1.08007 * 119.96121 * 179.97438 * 14 13 12 43 43 H 1.08001 * 120.03709 * 180.32387 * 15 14 13 44 44 H 0.96998 * 119.99749 * 179.97438 * 21 20 18 45 45 H 1.08001 * 120.03594 * 0.02562 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 3.7423 1.9400 0.0006 5 6 4.3428 1.1753 -1.1807 6 8 4.2793 1.4280 1.2219 7 6 4.0871 3.4253 -0.1250 8 7 5.5389 3.5813 -0.2445 9 6 6.0768 4.8109 -0.3670 10 8 5.3589 5.7884 -0.3788 11 6 7.5701 4.9712 -0.4904 12 6 7.9098 6.4342 -0.6141 13 6 7.9760 7.0249 -1.8632 14 6 8.2878 8.3669 -1.9808 15 6 8.5276 9.1234 -0.8504 16 6 8.4675 8.5321 0.4046 17 8 8.7088 9.2716 1.5171 18 6 9.1188 10.5424 1.3305 19 1 9.1635 10.9544 0.3332 20 6 9.4831 11.3202 2.4190 21 7 9.8837 12.5600 2.2368 22 14 9.4065 10.6073 4.1438 23 1 10.7079 9.9740 4.4761 24 1 9.1219 11.6931 5.1160 25 1 8.3287 9.5880 4.2108 26 6 8.1549 7.1836 0.5194 27 1 -0.3633 -1.0278 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8032 2.2371 0.8901 31 1 1.8031 2.2372 -0.8899 32 1 5.4258 1.2986 -1.1805 33 1 4.0971 0.1171 -1.0912 34 1 3.9332 1.5659 -2.1123 35 1 3.9420 1.8673 2.0146 36 1 3.7363 3.9560 0.7602 37 1 3.6033 3.8370 -1.0109 38 1 6.1130 2.7994 -0.2354 39 1 7.9205 4.4411 -1.3760 40 1 8.0542 4.5591 0.3950 41 1 7.7837 6.4367 -2.7483 42 1 8.3391 8.8251 -2.9576 43 1 8.7660 10.1727 -0.9427 44 1 10.1382 13.1043 2.9983 45 1 8.1038 6.7217 1.4943 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089841011.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:03 Heat of formation + Delta-G solvation = -90.961467 kcal Electronic energy + Delta-G solvation = -26167.625605 eV Core-core repulsion = 22277.231554 eV Total energy + Delta-G solvation = -3890.394051 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.15311 -39.15244 -38.43021 -36.59495 -34.51883 -32.69909 -32.37125 -31.98648 -29.59204 -29.43146 -27.91827 -27.90272 -25.93813 -25.05999 -21.82788 -21.22284 -20.99425 -20.13464 -18.03252 -17.64939 -17.15774 -16.99453 -16.20878 -16.02529 -15.64831 -15.40158 -15.13671 -15.06293 -14.66625 -14.25019 -14.15364 -13.91408 -13.79701 -13.53273 -13.42397 -13.29617 -12.92333 -12.71338 -12.55236 -12.49691 -12.36441 -12.23748 -12.14036 -11.63035 -11.56799 -11.27669 -10.82316 -10.77820 -10.69253 -10.63911 -10.35544 -10.12770 -9.81108 -9.35068 -9.22984 -8.83250 -8.10731 -8.10272 -7.31588 -6.37140 -4.03675 1.10806 2.04631 2.07927 2.32854 2.70587 3.07647 3.24973 3.27968 3.43756 3.71647 4.07928 4.20468 4.22599 4.27581 4.50814 4.63386 4.65799 4.73833 4.76761 4.91042 4.95479 5.10928 5.18702 5.19889 5.21373 5.35125 5.39415 5.41685 5.46540 5.59846 5.72568 5.77347 5.87937 6.15988 6.24454 6.29436 6.56950 6.83048 7.13069 7.14087 7.25286 7.35316 7.39005 7.65186 7.85248 8.08784 8.24621 8.98486 9.61826 10.70731 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.019104 B = 0.001974 C = 0.001862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.312653 B =14180.126170 C =15035.979591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 S -0.226 6.226 3 C -0.119 4.119 4 C 0.140 3.860 5 C -0.142 4.142 6 O -0.544 6.544 7 C 0.100 3.900 8 N -0.731 5.731 9 C 0.513 3.487 10 O -0.520 6.520 11 C -0.093 4.093 12 C -0.035 4.035 13 C -0.188 4.188 14 C -0.076 4.076 15 C -0.217 4.217 16 C 0.160 3.840 17 O -0.220 6.220 18 C -0.388 4.388 19 H 0.106 0.894 20 C 0.062 3.938 21 N -0.881 5.881 22 Si 0.905 3.095 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.260 1.260 26 C -0.174 4.174 27 H 0.101 0.899 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.087 0.913 31 H 0.093 0.907 32 H 0.067 0.933 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.380 0.620 36 H 0.071 0.929 37 H 0.076 0.924 38 H 0.403 0.597 39 H 0.099 0.901 40 H 0.100 0.900 41 H 0.105 0.895 42 H 0.110 0.890 43 H 0.132 0.868 44 H 0.279 0.721 45 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.570 -26.166 -6.226 30.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.303 4.303 2 S 0.000 6.000 3 C -0.269 4.269 4 C 0.097 3.903 5 C -0.199 4.199 6 O -0.350 6.350 7 C -0.026 4.026 8 N -0.387 5.387 9 C 0.300 3.700 10 O -0.394 6.394 11 C -0.133 4.133 12 C -0.036 4.036 13 C -0.207 4.207 14 C -0.095 4.095 15 C -0.236 4.236 16 C 0.108 3.892 17 O -0.125 6.125 18 C -0.464 4.464 19 H 0.123 0.877 20 C -0.140 4.140 21 N -0.520 5.520 22 Si 0.730 3.270 23 H -0.199 1.199 24 H -0.208 1.208 25 H -0.184 1.184 26 C -0.194 4.194 27 H 0.120 0.880 28 H 0.094 0.906 29 H 0.095 0.905 30 H 0.106 0.894 31 H 0.112 0.888 32 H 0.086 0.914 33 H 0.097 0.903 34 H 0.094 0.906 35 H 0.228 0.772 36 H 0.089 0.911 37 H 0.094 0.906 38 H 0.239 0.761 39 H 0.117 0.883 40 H 0.118 0.882 41 H 0.123 0.877 42 H 0.128 0.872 43 H 0.150 0.850 44 H 0.089 0.911 45 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -14.070 -26.544 -6.289 30.693 hybrid contribution -1.065 1.115 1.065 1.874 sum -15.135 -25.428 -5.224 30.049 Atomic orbital electron populations 1.23480 0.95337 1.06579 1.04902 1.87083 1.05886 1.09120 1.97950 1.24181 1.00040 0.96544 1.06095 1.21115 0.89414 0.92360 0.87377 1.21812 1.01453 1.01497 0.95175 1.86611 1.69958 1.63514 1.14927 1.21897 0.82653 0.94949 1.03116 1.45937 1.07097 1.08940 1.76700 1.20792 0.90977 0.82432 0.75813 1.90764 1.62681 1.38216 1.47785 1.20580 0.91981 0.96174 1.04579 1.18656 0.99140 0.92618 0.93163 1.20419 1.09092 0.95448 0.95726 1.20737 0.97633 0.93634 0.97463 1.21295 1.08937 1.01396 0.92019 1.19014 0.93246 0.90375 0.86554 1.83567 1.75327 1.25151 1.28456 1.20762 1.44026 0.84283 0.97281 0.87670 1.24454 0.95415 0.94727 0.99448 1.69648 1.42779 1.07058 1.32488 0.86188 0.79566 0.79009 0.82187 1.19912 1.20832 1.18395 1.19940 1.09745 0.91818 0.97861 0.88007 0.90554 0.90543 0.89445 0.88805 0.91414 0.90264 0.90603 0.77218 0.91106 0.90561 0.76123 0.88254 0.88174 0.87733 0.87180 0.84999 0.91137 0.86847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.61 10.76 101.05 1.09 0.48 16 2 S -0.23 -1.56 20.42 -107.50 -2.19 -3.75 16 3 C -0.12 -0.68 5.17 37.16 0.19 -0.49 16 4 C 0.14 0.90 0.75 -90.62 -0.07 0.83 16 5 C -0.14 -0.90 8.30 37.16 0.31 -0.59 16 6 O -0.54 -3.92 12.68 -35.23 -0.45 -4.36 16 7 C 0.10 0.83 4.82 -4.04 -0.02 0.81 16 8 N -0.73 -6.81 5.19 -60.29 -0.31 -7.12 16 9 C 0.51 6.89 7.82 -10.99 -0.09 6.80 16 10 O -0.52 -9.58 16.03 5.56 0.09 -9.49 16 11 C -0.09 -1.16 5.83 -29.03 -0.17 -1.33 16 12 C -0.04 -0.62 4.37 -104.65 -0.46 -1.07 16 13 C -0.19 -3.29 9.70 -39.53 -0.38 -3.67 16 14 C -0.08 -1.45 10.04 -39.61 -0.40 -1.85 16 15 C -0.22 -4.90 9.17 -39.39 -0.36 -5.26 16 16 C 0.16 3.86 6.65 -39.11 -0.26 3.60 16 17 O -0.22 -5.99 8.59 0.05 0.00 -5.99 16 18 C -0.39 -11.21 9.95 30.89 0.31 -10.90 16 19 H 0.11 3.10 5.44 -52.49 -0.29 2.81 16 20 C 0.06 1.79 5.49 -17.52 -0.10 1.69 16 21 N -0.88 -25.88 13.96 55.48 0.77 -25.11 16 22 Si 0.90 22.13 28.62 -169.99 -4.86 17.27 16 23 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 24 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 25 H -0.26 -6.42 7.11 56.52 0.40 -6.02 16 26 C -0.17 -3.62 9.65 -39.40 -0.38 -4.00 16 27 H 0.10 0.39 8.14 -51.92 -0.42 -0.03 16 28 H 0.08 0.31 8.14 -51.92 -0.42 -0.12 16 29 H 0.08 0.30 8.14 -51.92 -0.42 -0.13 16 30 H 0.09 0.43 8.14 -51.92 -0.42 0.01 16 31 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.07 0.41 6.57 -51.93 -0.34 0.07 16 33 H 0.08 0.57 6.72 -51.93 -0.35 0.22 16 34 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.38 1.81 9.05 45.56 0.41 2.22 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.40 2.89 6.99 -40.82 -0.29 2.61 16 39 H 0.10 0.93 8.08 -51.93 -0.42 0.51 16 40 H 0.10 1.05 8.09 -51.93 -0.42 0.63 16 41 H 0.10 1.53 8.06 -52.49 -0.42 1.11 16 42 H 0.11 1.78 8.06 -52.48 -0.42 1.35 16 43 H 0.13 3.09 5.64 -52.49 -0.30 2.80 16 44 H 0.28 7.55 8.31 -40.82 -0.34 7.21 16 45 H 0.11 2.21 8.06 -52.49 -0.42 1.79 16 LS Contribution 389.45 15.07 5.87 5.87 Total: -1.00 -34.83 389.45 -7.64 -42.47 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: -5.77 Total: 5.19 kcal Atomic # 6 Polarization: -14.18 SS G_CDS: -0.78 Total: -14.96 kcal Atomic # 7 Polarization: -32.69 SS G_CDS: 0.46 Total: -32.23 kcal Atomic # 8 Polarization: -19.49 SS G_CDS: -0.36 Total: -19.85 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -4.86 Total: 17.27 kcal Atomic # 16 Polarization: -1.56 SS G_CDS: -2.19 Total: -3.75 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -34.83 -7.64 -42.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089841011.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.494 kcal (2) G-P(sol) polarization free energy of solvation -34.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds