Wall clock time and date at job start Tue Mar 31 2020 22:23:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 C 1.81402 * 102.99764 * 2 1 4 4 C 1.53002 * 109.47083 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.46846 * 55.00116 * 4 3 2 6 6 O 1.42901 * 109.47176 * 295.00704 * 4 3 2 7 7 C 1.52996 * 109.47086 * 175.00122 * 4 3 2 8 8 N 1.46500 * 109.47128 * 184.99967 * 7 4 3 9 9 C 1.34774 * 120.00119 * 180.02562 * 8 7 4 10 10 O 1.21279 * 120.00124 * 359.97438 * 9 8 7 11 11 C 1.50703 * 119.99954 * 180.02562 * 9 8 7 12 12 C 1.50699 * 109.47027 * 179.97438 * 11 9 8 13 13 C 1.38328 * 119.96230 * 269.97567 * 12 11 9 14 14 C 1.38280 * 120.13484 * 180.02562 * 13 12 11 15 15 C 1.38120 * 120.07150 * 359.67534 * 14 13 12 16 16 C 1.38861 * 119.92830 * 0.59673 * 15 14 13 17 17 O 1.35751 * 120.06597 * 179.69892 * 16 15 14 18 18 C 1.34829 * 117.00376 * 354.17384 * 17 16 15 19 19 H 1.07998 * 119.99999 * 5.03596 * 18 17 16 20 20 C 1.38657 * 120.00083 * 185.03464 * 18 17 16 21 21 N 1.31555 * 119.99797 * 179.97438 * 20 18 17 22 22 Si 1.86799 * 119.99748 * 0.02562 * 20 18 17 23 23 H 1.48496 * 109.47410 * 90.00109 * 22 20 18 24 24 H 1.48504 * 109.46801 * 209.99865 * 22 20 18 25 25 H 1.48497 * 109.47495 * 329.99577 * 22 20 18 26 26 C 1.38073 * 119.96947 * 89.99413 * 12 11 9 27 27 H 1.09008 * 109.46729 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47123 * 299.99765 * 1 2 3 29 29 H 1.08999 * 109.47019 * 59.99853 * 1 2 3 30 30 H 1.09003 * 109.46898 * 60.00589 * 3 2 1 31 31 H 1.08996 * 109.47436 * 300.00346 * 3 2 1 32 32 H 1.09004 * 109.47003 * 179.97438 * 5 4 3 33 33 H 1.09001 * 109.47386 * 300.00129 * 5 4 3 34 34 H 1.09004 * 109.46807 * 60.00368 * 5 4 3 35 35 H 0.96700 * 113.99554 * 299.99307 * 6 4 3 36 36 H 1.09007 * 109.47155 * 65.00199 * 7 4 3 37 37 H 1.09003 * 109.47254 * 305.00245 * 7 4 3 38 38 H 0.97009 * 119.99766 * 0.02562 * 8 7 4 39 39 H 1.08993 * 109.47200 * 59.99691 * 11 9 8 40 40 H 1.09003 * 109.46989 * 299.99567 * 11 9 8 41 41 H 1.08001 * 119.93314 * 0.02562 * 13 12 11 42 42 H 1.08007 * 119.96121 * 179.97438 * 14 13 12 43 43 H 1.08001 * 120.03709 * 180.32387 * 15 14 13 44 44 H 0.96998 * 119.99749 * 179.97438 * 21 20 18 45 45 H 1.08001 * 120.03594 * 0.02562 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 3.7423 1.9400 0.0006 5 6 4.3428 1.1753 -1.1807 6 8 4.2793 1.4280 1.2219 7 6 4.0871 3.4253 -0.1250 8 7 5.5389 3.5813 -0.2445 9 6 6.0768 4.8109 -0.3670 10 8 5.3589 5.7884 -0.3788 11 6 7.5701 4.9712 -0.4904 12 6 7.9098 6.4342 -0.6141 13 6 7.9760 7.0249 -1.8632 14 6 8.2878 8.3669 -1.9808 15 6 8.5276 9.1234 -0.8504 16 6 8.4675 8.5321 0.4046 17 8 8.7088 9.2716 1.5171 18 6 9.1188 10.5424 1.3305 19 1 9.1635 10.9544 0.3332 20 6 9.4831 11.3202 2.4190 21 7 9.8837 12.5600 2.2368 22 14 9.4065 10.6073 4.1438 23 1 10.7079 9.9740 4.4761 24 1 9.1219 11.6931 5.1160 25 1 8.3287 9.5880 4.2108 26 6 8.1549 7.1836 0.5194 27 1 -0.3633 -1.0278 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8032 2.2371 0.8901 31 1 1.8031 2.2372 -0.8899 32 1 5.4258 1.2986 -1.1805 33 1 4.0971 0.1171 -1.0912 34 1 3.9332 1.5659 -2.1123 35 1 3.9420 1.8673 2.0146 36 1 3.7363 3.9560 0.7602 37 1 3.6033 3.8370 -1.0109 38 1 6.1130 2.7994 -0.2354 39 1 7.9205 4.4411 -1.3760 40 1 8.0542 4.5591 0.3950 41 1 7.7837 6.4367 -2.7483 42 1 8.3391 8.8251 -2.9576 43 1 8.7660 10.1727 -0.9427 44 1 10.1382 13.1043 2.9983 45 1 8.1038 6.7217 1.4943 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089841011.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:02 Heat of formation + Delta-G solvation = -116.414908 kcal Electronic energy + Delta-G solvation = -26168.729349 eV Core-core repulsion = 22277.231554 eV Total energy + Delta-G solvation = -3891.497795 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.24400 -40.61686 -39.32273 -38.22993 -35.35328 -34.48258 -33.63382 -33.02773 -31.08845 -29.95319 -29.07650 -28.36183 -27.30925 -26.66331 -23.38250 -22.66042 -21.61070 -21.32920 -19.67102 -19.02805 -18.42498 -17.97993 -16.96289 -16.85887 -16.65482 -16.59389 -16.33498 -15.99728 -15.82590 -15.63994 -15.55970 -15.02604 -14.70579 -14.58489 -14.45937 -14.38188 -14.16379 -13.91467 -13.85228 -13.36568 -13.20369 -13.04575 -12.95231 -12.80692 -12.72682 -12.51556 -12.43955 -12.33872 -12.08117 -11.93217 -11.31473 -11.24416 -10.94807 -10.87902 -10.80476 -10.10201 -9.66403 -9.06195 -8.60543 -8.50415 -6.23106 0.48421 0.67189 0.70750 1.29291 1.33988 1.50654 1.66141 1.69579 2.21423 2.27541 2.78616 3.05190 3.14268 3.24756 3.55845 3.66686 3.73583 3.77953 4.07794 4.14035 4.22587 4.30872 4.32847 4.34957 4.44206 4.49702 4.55718 4.62714 4.66440 4.71514 4.74714 4.89165 4.90591 4.95424 4.98220 5.25190 5.28449 5.39296 5.44071 5.65462 5.72996 5.76770 5.91694 6.25271 6.56412 6.72405 6.83855 7.30963 7.58930 8.61375 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.019104 B = 0.001974 C = 0.001862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.312653 B =14180.126170 C =15035.979591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 S -0.270 6.270 3 C -0.111 4.111 4 C 0.151 3.849 5 C -0.143 4.143 6 O -0.556 6.556 7 C 0.100 3.900 8 N -0.710 5.710 9 C 0.515 3.485 10 O -0.579 6.579 11 C -0.091 4.091 12 C -0.028 4.028 13 C -0.170 4.170 14 C -0.079 4.079 15 C -0.241 4.241 16 C 0.117 3.883 17 O -0.247 6.247 18 C -0.400 4.400 19 H 0.079 0.921 20 C 0.009 3.991 21 N -0.923 5.923 22 Si 0.971 3.029 23 H -0.262 1.262 24 H -0.266 1.266 25 H -0.267 1.267 26 C -0.181 4.181 27 H 0.108 0.892 28 H 0.081 0.919 29 H 0.084 0.916 30 H 0.094 0.906 31 H 0.101 0.899 32 H 0.072 0.928 33 H 0.070 0.930 34 H 0.082 0.918 35 H 0.389 0.611 36 H 0.063 0.937 37 H 0.074 0.926 38 H 0.417 0.583 39 H 0.143 0.857 40 H 0.125 0.875 41 H 0.149 0.851 42 H 0.140 0.860 43 H 0.107 0.893 44 H 0.285 0.715 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.406 -29.782 -6.942 34.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.294 4.294 2 S -0.044 6.044 3 C -0.260 4.260 4 C 0.108 3.892 5 C -0.200 4.200 6 O -0.363 6.363 7 C -0.026 4.026 8 N -0.365 5.365 9 C 0.302 3.698 10 O -0.458 6.458 11 C -0.130 4.130 12 C -0.028 4.028 13 C -0.189 4.189 14 C -0.096 4.096 15 C -0.260 4.260 16 C 0.069 3.931 17 O -0.155 6.155 18 C -0.476 4.476 19 H 0.097 0.903 20 C -0.189 4.189 21 N -0.564 5.564 22 Si 0.794 3.206 23 H -0.187 1.187 24 H -0.191 1.191 25 H -0.191 1.191 26 C -0.201 4.201 27 H 0.126 0.874 28 H 0.101 0.899 29 H 0.103 0.897 30 H 0.113 0.887 31 H 0.120 0.880 32 H 0.091 0.909 33 H 0.089 0.911 34 H 0.101 0.899 35 H 0.239 0.761 36 H 0.081 0.919 37 H 0.092 0.908 38 H 0.255 0.745 39 H 0.161 0.839 40 H 0.143 0.857 41 H 0.167 0.833 42 H 0.158 0.842 43 H 0.124 0.876 44 H 0.094 0.906 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -14.906 -30.239 -7.030 34.438 hybrid contribution -0.923 1.982 1.027 2.416 sum -15.829 -28.257 -6.003 32.940 Atomic orbital electron populations 1.23506 0.93028 1.07269 1.05596 1.87214 1.08560 1.10557 1.98072 1.24133 0.99502 0.95528 1.06879 1.20988 0.89920 0.90922 0.87335 1.21834 1.01825 1.00982 0.95391 1.86592 1.70298 1.63879 1.15566 1.21958 0.81792 0.96122 1.02702 1.45755 1.07863 1.08244 1.74632 1.20902 0.91079 0.82670 0.75110 1.90764 1.63916 1.40162 1.50929 1.20703 0.91584 0.92771 1.07989 1.19227 0.96360 0.95265 0.91988 1.21024 1.05567 0.94864 0.97423 1.21119 0.96565 0.94482 0.97478 1.21321 1.10634 1.00830 0.93216 1.19610 0.95218 0.91816 0.86488 1.83505 1.77647 1.24428 1.29955 1.20708 1.44701 0.85561 0.96624 0.90311 1.25288 0.95170 0.95074 1.03400 1.69730 1.44539 1.08268 1.33881 0.85210 0.79612 0.78391 0.77431 1.18685 1.19059 1.19149 1.20279 1.09409 0.90625 0.99749 0.87359 0.89949 0.89741 0.88701 0.88030 0.90866 0.91114 0.89873 0.76111 0.91853 0.90773 0.74468 0.83899 0.85670 0.83311 0.84179 0.87553 0.90575 0.86066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.91 10.76 113.37 1.22 0.31 16 2 S -0.27 -3.30 20.42 -56.49 -1.15 -4.45 16 3 C -0.11 -1.04 5.17 71.98 0.37 -0.67 16 4 C 0.15 1.58 0.75 -10.79 -0.01 1.58 16 5 C -0.14 -1.45 8.30 71.98 0.60 -0.85 16 6 O -0.56 -6.73 12.68 -148.98 -1.89 -8.62 16 7 C 0.10 1.41 4.82 86.38 0.42 1.83 16 8 N -0.71 -10.79 5.19 -463.06 -2.40 -13.19 16 9 C 0.51 12.09 7.82 87.66 0.69 12.78 16 10 O -0.58 -20.23 16.03 -3.03 -0.05 -20.28 16 11 C -0.09 -1.83 5.83 29.10 0.17 -1.66 16 12 C -0.03 -0.89 4.37 -19.88 -0.09 -0.98 16 13 C -0.17 -5.34 9.70 22.30 0.22 -5.13 16 14 C -0.08 -2.88 10.04 22.25 0.22 -2.65 16 15 C -0.24 -11.29 9.17 22.39 0.21 -11.08 16 16 C 0.12 5.86 6.65 22.58 0.15 6.01 16 17 O -0.25 -14.17 8.59 -22.74 -0.20 -14.37 16 18 C -0.40 -24.54 9.95 67.92 0.68 -23.87 16 19 H 0.08 5.07 5.44 -2.91 -0.02 5.06 16 20 C 0.01 0.53 5.49 84.83 0.47 0.99 16 21 N -0.92 -56.52 13.96 21.61 0.30 -56.22 16 22 Si 0.97 46.88 28.62 68.60 1.96 48.85 16 23 H -0.26 -12.01 7.11 99.48 0.71 -11.30 16 24 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 25 H -0.27 -13.03 7.11 99.48 0.71 -12.32 16 26 C -0.18 -7.42 9.65 22.39 0.22 -7.20 16 27 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 28 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 29 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.07 0.64 6.57 -2.39 -0.02 0.62 16 33 H 0.07 0.89 6.72 -2.39 -0.02 0.87 16 34 H 0.08 0.71 8.14 -2.38 -0.02 0.69 16 35 H 0.39 2.92 9.05 -74.06 -0.67 2.25 16 36 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 37 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.42 4.21 6.99 -92.70 -0.65 3.57 16 39 H 0.14 1.71 8.08 -2.39 -0.02 1.69 16 40 H 0.13 1.98 8.09 -2.39 -0.02 1.96 16 41 H 0.15 3.43 8.06 -2.91 -0.02 3.41 16 42 H 0.14 4.20 8.06 -2.91 -0.02 4.18 16 43 H 0.11 5.44 5.64 -2.91 -0.02 5.42 16 44 H 0.28 15.93 8.31 -92.71 -0.77 15.16 16 45 H 0.12 4.65 8.06 -2.91 -0.02 4.62 16 Total: -1.00 -80.84 389.45 1.80 -79.04 By element: Atomic # 1 Polarization: 20.13 SS G_CDS: -0.30 Total: 19.83 kcal Atomic # 6 Polarization: -36.11 SS G_CDS: 5.52 Total: -30.60 kcal Atomic # 7 Polarization: -67.31 SS G_CDS: -2.10 Total: -69.41 kcal Atomic # 8 Polarization: -41.13 SS G_CDS: -2.13 Total: -43.26 kcal Atomic # 14 Polarization: 46.88 SS G_CDS: 1.96 Total: 48.85 kcal Atomic # 16 Polarization: -3.30 SS G_CDS: -1.15 Total: -4.45 kcal Total: -80.84 1.80 -79.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089841011.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.372 kcal (2) G-P(sol) polarization free energy of solvation -80.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds