Wall clock time and date at job start Tue Mar 31 2020 22:23:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81406 * 1 3 3 C 1.81400 * 102.99723 * 2 1 4 4 C 1.53004 * 109.46913 * 179.97438 * 3 2 1 5 5 C 1.53003 * 109.47225 * 305.00352 * 4 3 2 6 6 O 1.42898 * 109.47083 * 65.00272 * 4 3 2 7 7 C 1.53002 * 109.47073 * 185.00370 * 4 3 2 8 8 N 1.46503 * 109.46556 * 180.02562 * 7 4 3 9 9 C 1.34783 * 119.99585 * 179.97438 * 8 7 4 10 10 O 1.21284 * 119.99976 * 0.02562 * 9 8 7 11 11 C 1.50699 * 120.00059 * 179.97438 * 9 8 7 12 12 C 1.50699 * 109.47151 * 180.02562 * 11 9 8 13 13 C 1.38328 * 119.96224 * 270.02423 * 12 11 9 14 14 C 1.38281 * 120.13505 * 179.97438 * 13 12 11 15 15 C 1.38120 * 120.06679 * 359.68445 * 14 13 12 16 16 C 1.38852 * 119.93490 * 0.58817 * 15 14 13 17 17 O 1.35752 * 120.07221 * 179.70368 * 16 15 14 18 18 C 1.34829 * 116.99954 * 354.17311 * 17 16 15 19 19 H 1.07998 * 119.99999 * 5.03596 * 18 17 16 20 20 C 1.38656 * 119.99670 * 185.03445 * 18 17 16 21 21 N 1.31550 * 120.00275 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99668 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46814 * 90.00164 * 22 20 18 24 24 H 1.48501 * 109.47378 * 210.00272 * 22 20 18 25 25 H 1.48503 * 109.47143 * 330.00397 * 22 20 18 26 26 C 1.38073 * 119.96539 * 89.99818 * 12 11 9 27 27 H 1.08996 * 109.46803 * 299.99776 * 1 2 3 28 28 H 1.08999 * 109.47139 * 59.99353 * 1 2 3 29 29 H 1.09000 * 109.47223 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47158 * 60.00638 * 3 2 1 31 31 H 1.09001 * 109.47597 * 300.00125 * 3 2 1 32 32 H 1.08997 * 109.47254 * 300.00198 * 5 4 3 33 33 H 1.09004 * 109.47202 * 59.99850 * 5 4 3 34 34 H 1.08993 * 109.47264 * 179.97438 * 5 4 3 35 35 H 0.96697 * 113.99917 * 59.99528 * 6 4 3 36 36 H 1.08997 * 109.46933 * 60.00090 * 7 4 3 37 37 H 1.08997 * 109.46850 * 299.99912 * 7 4 3 38 38 H 0.97001 * 120.00603 * 0.02562 * 8 7 4 39 39 H 1.09004 * 109.46756 * 60.00007 * 11 9 8 40 40 H 1.08998 * 109.46908 * 300.00650 * 11 9 8 41 41 H 1.08001 * 119.93314 * 359.97438 * 13 12 11 42 42 H 1.07993 * 119.96315 * 179.97438 * 14 13 12 43 43 H 1.08001 * 120.03256 * 180.31909 * 15 14 13 44 44 H 0.96999 * 119.99936 * 179.97438 * 21 20 18 45 45 H 1.07996 * 120.03547 * 0.04988 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 3.7423 1.9400 0.0006 5 6 4.3419 1.1754 1.1826 6 8 4.2803 1.4279 -1.2201 7 6 4.0870 3.4253 0.1265 8 7 5.5427 3.5904 0.1265 9 6 6.0813 4.8218 0.2277 10 8 5.3607 5.7931 0.3194 11 6 7.5786 4.9917 0.2283 12 6 7.9182 6.4547 0.3521 13 6 8.0621 7.2291 -0.7850 14 6 8.3731 8.5720 -0.6755 15 6 8.5346 9.1456 0.5705 16 6 8.3965 8.3697 1.7137 17 8 8.5605 8.9292 2.9396 18 6 8.9746 10.2118 2.9766 19 1 9.0816 10.7713 2.0590 20 6 9.2628 10.8124 4.1926 21 7 9.1329 10.1307 5.3101 22 14 9.8371 12.5892 4.2437 23 1 8.6598 13.4867 4.3617 24 1 10.7299 12.7875 5.4137 25 1 10.5780 12.9061 2.9964 26 6 8.0848 7.0207 1.6004 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8032 2.2371 0.8900 31 1 1.8031 2.2372 -0.8899 32 1 3.9315 1.5660 2.1138 33 1 4.0963 0.1172 1.0930 34 1 5.4249 1.2979 1.1828 35 1 3.9436 1.8670 -2.0131 36 1 3.6767 3.8159 1.0576 37 1 3.6599 3.9700 -0.7156 38 1 6.1190 2.8136 0.0528 39 1 7.9890 4.6005 -0.7027 40 1 8.0057 4.4473 1.0706 41 1 7.9312 6.7840 -1.7603 42 1 8.4852 9.1740 -1.5651 43 1 8.7724 10.1957 0.6555 44 1 9.3349 10.5508 6.1608 45 1 7.9727 6.4155 2.4878 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089841012.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:06 Heat of formation + Delta-G solvation = -93.557351 kcal Electronic energy + Delta-G solvation = -26107.830177 eV Core-core repulsion = 22217.323561 eV Total energy + Delta-G solvation = -3890.506617 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.07417 -39.01746 -38.33167 -36.41460 -34.42628 -32.67544 -32.30191 -31.85669 -29.55497 -29.18918 -27.84029 -27.80348 -25.89682 -25.09313 -21.66580 -21.24928 -20.98613 -20.14561 -18.01995 -17.50967 -17.06639 -16.85562 -16.15534 -15.96718 -15.60391 -15.32115 -15.05505 -14.91123 -14.46590 -14.34463 -14.11868 -14.08358 -13.66013 -13.50307 -13.32511 -13.19476 -12.86474 -12.66410 -12.51828 -12.42636 -12.34289 -12.20177 -11.76193 -11.53268 -11.46520 -11.23083 -10.79126 -10.74723 -10.61272 -10.56380 -10.40843 -10.31416 -9.73934 -9.28401 -9.16145 -8.78760 -8.06438 -8.00809 -7.16019 -6.39210 -3.98103 1.14679 2.11360 2.14936 2.45033 2.78249 3.12117 3.16754 3.18235 3.21751 3.76909 4.01129 4.12440 4.25641 4.27887 4.60108 4.66682 4.69148 4.79175 4.93828 4.97181 5.13315 5.16349 5.24306 5.25106 5.32570 5.42776 5.47899 5.52697 5.55997 5.72298 5.80898 5.85114 5.98931 6.23376 6.31110 6.39611 6.71664 6.97650 7.12850 7.15403 7.32541 7.42158 7.46331 7.50014 7.88861 8.06033 8.32209 9.06630 9.78045 10.79149 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.022014 B = 0.001849 C = 0.001770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.617817 B =15141.262426 C =15819.365730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 S -0.226 6.226 3 C -0.119 4.119 4 C 0.140 3.860 5 C -0.143 4.143 6 O -0.544 6.544 7 C 0.100 3.900 8 N -0.731 5.731 9 C 0.514 3.486 10 O -0.520 6.520 11 C -0.093 4.093 12 C -0.033 4.033 13 C -0.196 4.196 14 C -0.075 4.075 15 C -0.231 4.231 16 C 0.154 3.846 17 O -0.180 6.180 18 C -0.390 4.390 19 H 0.091 0.909 20 C 0.038 3.962 21 N -0.865 5.865 22 Si 0.940 3.060 23 H -0.274 1.274 24 H -0.278 1.278 25 H -0.268 1.268 26 C -0.174 4.174 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.101 0.899 30 H 0.094 0.906 31 H 0.086 0.914 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.068 0.932 35 H 0.378 0.622 36 H 0.077 0.923 37 H 0.069 0.931 38 H 0.403 0.597 39 H 0.098 0.902 40 H 0.100 0.900 41 H 0.102 0.898 42 H 0.107 0.893 43 H 0.126 0.874 44 H 0.269 0.731 45 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.507 -19.764 -12.298 26.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.303 4.303 2 S 0.000 6.000 3 C -0.268 4.268 4 C 0.098 3.902 5 C -0.200 4.200 6 O -0.350 6.350 7 C -0.026 4.026 8 N -0.387 5.387 9 C 0.300 3.700 10 O -0.394 6.394 11 C -0.133 4.133 12 C -0.034 4.034 13 C -0.215 4.215 14 C -0.094 4.094 15 C -0.250 4.250 16 C 0.101 3.899 17 O -0.084 6.084 18 C -0.467 4.467 19 H 0.109 0.891 20 C -0.166 4.166 21 N -0.500 5.500 22 Si 0.765 3.235 23 H -0.199 1.199 24 H -0.203 1.203 25 H -0.192 1.192 26 C -0.193 4.193 27 H 0.095 0.905 28 H 0.094 0.906 29 H 0.120 0.880 30 H 0.112 0.888 31 H 0.105 0.895 32 H 0.095 0.905 33 H 0.097 0.903 34 H 0.087 0.913 35 H 0.226 0.774 36 H 0.095 0.905 37 H 0.087 0.913 38 H 0.239 0.761 39 H 0.117 0.883 40 H 0.118 0.882 41 H 0.120 0.880 42 H 0.125 0.875 43 H 0.144 0.856 44 H 0.079 0.921 45 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -12.065 -20.353 -11.326 26.231 hybrid contribution -0.844 2.064 -0.443 2.274 sum -12.909 -18.289 -11.769 25.291 Atomic orbital electron populations 1.23477 0.95382 1.06558 1.04889 1.87084 1.05837 1.09155 1.97950 1.24180 1.00069 0.96510 1.06082 1.21127 0.89380 0.92401 0.87311 1.21820 1.01610 1.01407 0.95165 1.86609 1.69927 1.63503 1.14930 1.21886 0.82613 0.94846 1.03286 1.45898 1.06657 1.09139 1.76961 1.20799 0.91088 0.82349 0.75716 1.90762 1.62730 1.38746 1.47208 1.20578 0.91849 0.96328 1.04538 1.18661 0.99027 0.92633 0.93046 1.20348 1.10144 0.94508 0.96529 1.20676 0.97849 0.94491 0.96341 1.21170 1.10728 1.00882 0.92216 1.19280 0.92710 0.91860 0.86057 1.83976 1.73880 1.27983 1.22553 1.21314 1.45483 0.85172 0.94693 0.89143 1.25271 0.96946 1.00150 0.94209 1.70039 1.45421 1.36807 0.97735 0.85722 0.78734 0.80655 0.78360 1.19948 1.20303 1.19227 1.19946 1.09827 0.93044 0.96529 0.90514 0.90605 0.88025 0.88756 0.89505 0.90537 0.90325 0.91341 0.77372 0.90455 0.91270 0.76114 0.88331 0.88210 0.87961 0.87501 0.85639 0.92129 0.86841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.66 10.76 101.05 1.09 0.43 16 2 S -0.23 -1.64 20.42 -107.50 -2.19 -3.84 16 3 C -0.12 -0.73 5.17 37.16 0.19 -0.54 16 4 C 0.14 0.97 0.73 -90.62 -0.07 0.90 16 5 C -0.14 -1.04 8.35 37.16 0.31 -0.73 16 6 O -0.54 -3.91 12.48 -35.23 -0.44 -4.35 16 7 C 0.10 0.88 4.78 -4.04 -0.02 0.86 16 8 N -0.73 -7.31 5.15 -60.29 -0.31 -7.62 16 9 C 0.51 7.32 7.82 -10.98 -0.09 7.24 16 10 O -0.52 -10.02 16.03 5.55 0.09 -9.93 16 11 C -0.09 -1.24 5.83 -29.04 -0.17 -1.41 16 12 C -0.03 -0.61 4.37 -104.65 -0.46 -1.07 16 13 C -0.20 -3.60 9.70 -39.53 -0.38 -3.98 16 14 C -0.08 -1.47 10.04 -39.61 -0.40 -1.87 16 15 C -0.23 -5.28 9.17 -39.40 -0.36 -5.64 16 16 C 0.15 3.91 6.65 -39.11 -0.26 3.65 16 17 O -0.18 -5.32 9.76 0.05 0.00 -5.32 16 18 C -0.39 -11.22 9.49 30.89 0.29 -10.93 16 19 H 0.09 2.41 5.21 -52.49 -0.27 2.14 16 20 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 21 N -0.86 -25.87 13.67 55.48 0.76 -25.11 16 22 Si 0.94 20.98 29.55 -169.99 -5.02 15.96 16 23 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 24 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 25 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 26 C -0.17 -3.87 9.65 -39.39 -0.38 -4.25 16 27 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.07 0.32 8.14 -51.92 -0.42 -0.10 16 29 H 0.10 0.42 8.14 -51.92 -0.42 0.00 16 30 H 0.09 0.54 8.14 -51.92 -0.42 0.11 16 31 H 0.09 0.44 8.14 -51.92 -0.42 0.02 16 32 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.08 0.63 6.72 -51.93 -0.35 0.28 16 34 H 0.07 0.49 6.86 -51.93 -0.36 0.13 16 35 H 0.38 1.71 9.04 45.56 0.41 2.13 16 36 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.40 3.17 7.19 -40.82 -0.29 2.88 16 39 H 0.10 1.02 8.09 -51.93 -0.42 0.60 16 40 H 0.10 1.14 8.08 -51.93 -0.42 0.72 16 41 H 0.10 1.58 8.06 -52.49 -0.42 1.16 16 42 H 0.11 1.75 8.06 -52.49 -0.42 1.33 16 43 H 0.13 2.85 5.64 -52.49 -0.30 2.56 16 44 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 45 H 0.11 2.44 8.06 -52.49 -0.42 2.02 16 LS Contribution 390.83 15.07 5.89 5.89 Total: -1.00 -35.85 390.83 -7.81 -43.65 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: -5.78 Total: 7.02 kcal Atomic # 6 Polarization: -15.57 SS G_CDS: -0.79 Total: -16.36 kcal Atomic # 7 Polarization: -33.17 SS G_CDS: 0.45 Total: -32.72 kcal Atomic # 8 Polarization: -19.24 SS G_CDS: -0.35 Total: -19.59 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.19 Total: -3.84 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -35.85 -7.81 -43.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089841012.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.905 kcal (2) G-P(sol) polarization free energy of solvation -35.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds