Wall clock time and date at job start Tue Mar 31 2020 22:23:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81406 * 1 3 3 C 1.81400 * 102.99723 * 2 1 4 4 C 1.53004 * 109.46913 * 179.97438 * 3 2 1 5 5 C 1.53003 * 109.47225 * 305.00352 * 4 3 2 6 6 O 1.42898 * 109.47083 * 65.00272 * 4 3 2 7 7 C 1.53002 * 109.47073 * 185.00370 * 4 3 2 8 8 N 1.46503 * 109.46556 * 180.02562 * 7 4 3 9 9 C 1.34783 * 119.99585 * 179.97438 * 8 7 4 10 10 O 1.21284 * 119.99976 * 0.02562 * 9 8 7 11 11 C 1.50699 * 120.00059 * 179.97438 * 9 8 7 12 12 C 1.50699 * 109.47151 * 180.02562 * 11 9 8 13 13 C 1.38328 * 119.96224 * 270.02423 * 12 11 9 14 14 C 1.38281 * 120.13505 * 179.97438 * 13 12 11 15 15 C 1.38120 * 120.06679 * 359.68445 * 14 13 12 16 16 C 1.38852 * 119.93490 * 0.58817 * 15 14 13 17 17 O 1.35752 * 120.07221 * 179.70368 * 16 15 14 18 18 C 1.34829 * 116.99954 * 354.17311 * 17 16 15 19 19 H 1.07998 * 119.99999 * 5.03596 * 18 17 16 20 20 C 1.38656 * 119.99670 * 185.03445 * 18 17 16 21 21 N 1.31550 * 120.00275 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99668 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46814 * 90.00164 * 22 20 18 24 24 H 1.48501 * 109.47378 * 210.00272 * 22 20 18 25 25 H 1.48503 * 109.47143 * 330.00397 * 22 20 18 26 26 C 1.38073 * 119.96539 * 89.99818 * 12 11 9 27 27 H 1.08996 * 109.46803 * 299.99776 * 1 2 3 28 28 H 1.08999 * 109.47139 * 59.99353 * 1 2 3 29 29 H 1.09000 * 109.47223 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47158 * 60.00638 * 3 2 1 31 31 H 1.09001 * 109.47597 * 300.00125 * 3 2 1 32 32 H 1.08997 * 109.47254 * 300.00198 * 5 4 3 33 33 H 1.09004 * 109.47202 * 59.99850 * 5 4 3 34 34 H 1.08993 * 109.47264 * 179.97438 * 5 4 3 35 35 H 0.96697 * 113.99917 * 59.99528 * 6 4 3 36 36 H 1.08997 * 109.46933 * 60.00090 * 7 4 3 37 37 H 1.08997 * 109.46850 * 299.99912 * 7 4 3 38 38 H 0.97001 * 120.00603 * 0.02562 * 8 7 4 39 39 H 1.09004 * 109.46756 * 60.00007 * 11 9 8 40 40 H 1.08998 * 109.46908 * 300.00650 * 11 9 8 41 41 H 1.08001 * 119.93314 * 359.97438 * 13 12 11 42 42 H 1.07993 * 119.96315 * 179.97438 * 14 13 12 43 43 H 1.08001 * 120.03256 * 180.31909 * 15 14 13 44 44 H 0.96999 * 119.99936 * 179.97438 * 21 20 18 45 45 H 1.07996 * 120.03547 * 0.04988 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 3.7423 1.9400 0.0006 5 6 4.3419 1.1754 1.1826 6 8 4.2803 1.4279 -1.2201 7 6 4.0870 3.4253 0.1265 8 7 5.5427 3.5904 0.1265 9 6 6.0813 4.8218 0.2277 10 8 5.3607 5.7931 0.3194 11 6 7.5786 4.9917 0.2283 12 6 7.9182 6.4547 0.3521 13 6 8.0621 7.2291 -0.7850 14 6 8.3731 8.5720 -0.6755 15 6 8.5346 9.1456 0.5705 16 6 8.3965 8.3697 1.7137 17 8 8.5605 8.9292 2.9396 18 6 8.9746 10.2118 2.9766 19 1 9.0816 10.7713 2.0590 20 6 9.2628 10.8124 4.1926 21 7 9.1329 10.1307 5.3101 22 14 9.8371 12.5892 4.2437 23 1 8.6598 13.4867 4.3617 24 1 10.7299 12.7875 5.4137 25 1 10.5780 12.9061 2.9964 26 6 8.0848 7.0207 1.6004 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8032 2.2371 0.8900 31 1 1.8031 2.2372 -0.8899 32 1 3.9315 1.5660 2.1138 33 1 4.0963 0.1172 1.0930 34 1 5.4249 1.2979 1.1828 35 1 3.9436 1.8670 -2.0131 36 1 3.6767 3.8159 1.0576 37 1 3.6599 3.9700 -0.7156 38 1 6.1190 2.8136 0.0528 39 1 7.9890 4.6005 -0.7027 40 1 8.0057 4.4473 1.0706 41 1 7.9312 6.7840 -1.7603 42 1 8.4852 9.1740 -1.5651 43 1 8.7724 10.1957 0.6555 44 1 9.3349 10.5508 6.1608 45 1 7.9727 6.4155 2.4878 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089841012.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:05 Heat of formation + Delta-G solvation = -120.149622 kcal Electronic energy + Delta-G solvation = -26108.983305 eV Core-core repulsion = 22217.323561 eV Total energy + Delta-G solvation = -3891.659744 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.20708 -40.52784 -39.30529 -38.12789 -35.32570 -34.33968 -33.59713 -33.04511 -30.89434 -29.95507 -29.05231 -28.36430 -27.40179 -26.64038 -23.28620 -22.78686 -21.65552 -21.36605 -19.53304 -18.89601 -18.41816 -17.98527 -16.94653 -16.73656 -16.65188 -16.42184 -16.39344 -16.06552 -15.81285 -15.78463 -15.44636 -14.99912 -14.68648 -14.57332 -14.45788 -14.32140 -13.98587 -13.89460 -13.58227 -13.39449 -13.19801 -12.98212 -12.95500 -12.80895 -12.70807 -12.46388 -12.38329 -12.21378 -12.10181 -12.09753 -11.24256 -11.19970 -10.93386 -10.81934 -10.78210 -10.11184 -9.62821 -8.97063 -8.60654 -8.46644 -6.15163 0.52114 0.67253 0.76778 1.34009 1.43842 1.52076 1.66034 1.68223 2.17567 2.21161 2.85548 3.17777 3.25469 3.45151 3.54626 3.65141 3.72527 3.82407 4.11136 4.14974 4.22478 4.32886 4.33070 4.35074 4.45050 4.49523 4.58666 4.62888 4.66487 4.73013 4.74916 4.87928 4.89866 4.94183 5.08095 5.13578 5.26332 5.31695 5.42392 5.65993 5.73696 5.76393 6.03317 6.24405 6.55658 6.74823 6.97852 7.29907 7.79668 8.76910 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.022014 B = 0.001849 C = 0.001770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.617817 B =15141.262426 C =15819.365730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 S -0.270 6.270 3 C -0.111 4.111 4 C 0.154 3.846 5 C -0.145 4.145 6 O -0.552 6.552 7 C 0.100 3.900 8 N -0.710 5.710 9 C 0.516 3.484 10 O -0.579 6.579 11 C -0.092 4.092 12 C -0.026 4.026 13 C -0.180 4.180 14 C -0.074 4.074 15 C -0.247 4.247 16 C 0.111 3.889 17 O -0.235 6.235 18 C -0.414 4.414 19 H 0.100 0.900 20 C -0.025 4.025 21 N -0.922 5.922 22 Si 1.020 2.980 23 H -0.264 1.264 24 H -0.269 1.269 25 H -0.252 1.252 26 C -0.193 4.193 27 H 0.082 0.918 28 H 0.084 0.916 29 H 0.108 0.892 30 H 0.097 0.903 31 H 0.099 0.901 32 H 0.077 0.923 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.391 0.609 36 H 0.066 0.934 37 H 0.071 0.929 38 H 0.417 0.583 39 H 0.143 0.857 40 H 0.120 0.880 41 H 0.148 0.852 42 H 0.145 0.855 43 H 0.117 0.883 44 H 0.272 0.728 45 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.780 -20.824 -15.388 28.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.294 4.294 2 S -0.044 6.044 3 C -0.260 4.260 4 C 0.111 3.889 5 C -0.202 4.202 6 O -0.360 6.360 7 C -0.026 4.026 8 N -0.364 5.364 9 C 0.303 3.697 10 O -0.458 6.458 11 C -0.131 4.131 12 C -0.026 4.026 13 C -0.198 4.198 14 C -0.092 4.092 15 C -0.266 4.266 16 C 0.061 3.939 17 O -0.142 6.142 18 C -0.490 4.490 19 H 0.117 0.883 20 C -0.222 4.222 21 N -0.560 5.560 22 Si 0.839 3.161 23 H -0.189 1.189 24 H -0.194 1.194 25 H -0.176 1.176 26 C -0.212 4.212 27 H 0.101 0.899 28 H 0.103 0.897 29 H 0.127 0.873 30 H 0.116 0.884 31 H 0.118 0.882 32 H 0.095 0.905 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.240 0.760 36 H 0.084 0.916 37 H 0.089 0.911 38 H 0.255 0.745 39 H 0.161 0.839 40 H 0.138 0.862 41 H 0.165 0.835 42 H 0.163 0.837 43 H 0.135 0.865 44 H 0.081 0.919 45 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -12.344 -21.497 -14.483 28.710 hybrid contribution -0.874 2.106 0.256 2.295 sum -13.218 -19.391 -14.227 27.443 Atomic orbital electron populations 1.23504 0.92972 1.07284 1.05608 1.87215 1.08613 1.10510 1.98075 1.24126 0.99409 0.95575 1.06908 1.20917 0.89922 0.90734 0.87299 1.21836 1.01767 1.01126 0.95494 1.86591 1.70172 1.63779 1.15424 1.21961 0.81609 0.96214 1.02827 1.45705 1.07527 1.08338 1.74846 1.20878 0.91123 0.82675 0.75018 1.90757 1.63918 1.40727 1.50361 1.20697 0.91642 0.92961 1.07819 1.19199 0.96373 0.95560 0.91501 1.20980 1.06589 0.93930 0.98350 1.21136 0.96336 0.95670 0.96073 1.21293 1.11628 1.00591 0.93113 1.19890 0.94639 0.93513 0.85889 1.83934 1.76601 1.28635 1.25007 1.21822 1.45975 0.85624 0.95594 0.88259 1.26616 0.96763 1.05436 0.93380 1.70188 1.47900 1.39384 0.98551 0.84572 0.78547 0.73882 0.79080 1.18943 1.19377 1.17593 1.20225 1.10556 0.92132 0.98280 0.89937 0.89727 0.87330 0.88434 0.88222 0.90458 0.90930 0.91147 0.75961 0.91600 0.91056 0.74474 0.83907 0.86151 0.83466 0.83695 0.86488 0.91868 0.87574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.01 10.76 113.37 1.22 0.21 16 2 S -0.27 -3.57 20.42 -56.49 -1.15 -4.72 16 3 C -0.11 -1.17 5.17 71.98 0.37 -0.79 16 4 C 0.15 1.83 0.73 -10.79 -0.01 1.82 16 5 C -0.14 -1.91 8.35 71.98 0.60 -1.30 16 6 O -0.55 -6.53 12.48 -148.98 -1.86 -8.39 16 7 C 0.10 1.58 4.78 86.38 0.41 2.00 16 8 N -0.71 -12.32 5.15 -463.05 -2.38 -14.71 16 9 C 0.52 13.46 7.82 87.66 0.69 14.15 16 10 O -0.58 -21.70 16.03 -3.04 -0.05 -21.75 16 11 C -0.09 -2.13 5.83 29.10 0.17 -1.96 16 12 C -0.03 -0.90 4.37 -19.88 -0.09 -0.99 16 13 C -0.18 -5.93 9.70 22.30 0.22 -5.72 16 14 C -0.07 -2.72 10.04 22.25 0.22 -2.50 16 15 C -0.25 -11.50 9.17 22.39 0.21 -11.29 16 16 C 0.11 5.88 6.65 22.58 0.15 6.03 16 17 O -0.23 -14.86 9.76 -22.74 -0.22 -15.08 16 18 C -0.41 -25.14 9.49 67.92 0.64 -24.49 16 19 H 0.10 5.56 5.21 -2.91 -0.02 5.54 16 20 C -0.02 -1.46 5.49 84.83 0.47 -1.00 16 21 N -0.92 -58.17 13.67 21.61 0.30 -57.87 16 22 Si 1.02 44.19 29.55 68.60 2.03 46.22 16 23 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 24 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 25 H -0.25 -10.13 7.11 99.48 0.71 -9.42 16 26 C -0.19 -8.76 9.65 22.39 0.22 -8.55 16 27 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 28 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 29 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.07 1.08 6.72 -2.38 -0.02 1.07 16 34 H 0.07 0.87 6.86 -2.39 -0.02 0.85 16 35 H 0.39 2.45 9.04 -74.06 -0.67 1.78 16 36 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.42 5.15 7.19 -92.71 -0.67 4.48 16 39 H 0.14 2.11 8.09 -2.38 -0.02 2.09 16 40 H 0.12 2.36 8.08 -2.39 -0.02 2.34 16 41 H 0.15 3.61 8.06 -2.91 -0.02 3.59 16 42 H 0.15 4.17 8.06 -2.91 -0.02 4.15 16 43 H 0.12 5.50 5.64 -2.91 -0.02 5.49 16 44 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 45 H 0.11 4.82 8.06 -2.91 -0.02 4.79 16 Total: -1.00 -84.69 390.83 1.83 -82.86 By element: Atomic # 1 Polarization: 28.15 SS G_CDS: -0.32 Total: 27.84 kcal Atomic # 6 Polarization: -39.88 SS G_CDS: 5.49 Total: -34.39 kcal Atomic # 7 Polarization: -70.49 SS G_CDS: -2.09 Total: -72.58 kcal Atomic # 8 Polarization: -43.09 SS G_CDS: -2.13 Total: -45.22 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.22 kcal Atomic # 16 Polarization: -3.57 SS G_CDS: -1.15 Total: -4.72 kcal Total: -84.69 1.83 -82.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089841012.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.288 kcal (2) G-P(sol) polarization free energy of solvation -84.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds