Wall clock time and date at job start Tue Mar 31 2020 23:20:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50700 * 119.99892 * 2 1 4 4 O 1.42901 * 109.46860 * 135.00304 * 3 2 1 5 5 C 1.35904 * 117.00126 * 179.97438 * 4 3 2 6 6 C 1.38758 * 120.05175 * 0.25077 * 5 4 3 7 7 C 1.38123 * 119.94156 * 180.32208 * 6 5 4 8 8 C 1.38296 * 120.05444 * 359.67542 * 7 6 5 9 9 C 1.38240 * 120.11004 * 0.03117 * 8 7 6 10 10 C 1.38165 * 120.05959 * 0.02562 * 9 8 7 11 11 C 1.50701 * 120.03120 * 179.97438 * 10 9 8 12 12 N 1.46506 * 109.46793 * 260.00109 * 11 10 9 13 13 S 1.65597 * 119.99791 * 165.00139 * 12 11 10 14 14 O 1.42101 * 104.27612 * 181.07220 * 13 12 11 15 15 O 1.42101 * 104.27805 * 308.92463 * 13 12 11 16 16 C 1.81397 * 104.45432 * 64.99519 * 13 12 11 17 17 C 1.52999 * 109.47238 * 179.97438 * 16 13 12 18 18 C 1.53004 * 109.46697 * 180.02562 * 17 16 13 19 19 C 1.50700 * 109.46889 * 179.97438 * 18 17 16 20 20 H 1.08008 * 119.99751 * 0.02562 * 19 18 17 21 21 C 1.37877 * 120.00174 * 179.97438 * 19 18 17 22 22 N 1.31507 * 119.99945 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00094 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47044 * 0.02562 * 23 21 19 25 25 H 1.48499 * 109.46932 * 120.00328 * 23 21 19 26 26 H 1.48498 * 109.47306 * 240.00413 * 23 21 19 27 27 H 1.07993 * 120.00070 * 179.97438 * 1 2 3 28 28 H 1.07998 * 119.99624 * 359.97438 * 1 2 3 29 29 H 1.08001 * 119.99687 * 180.02562 * 2 1 3 30 30 H 1.09000 * 109.47240 * 15.00366 * 3 2 1 31 31 H 1.09003 * 109.46935 * 255.00205 * 3 2 1 32 32 H 1.07999 * 120.02719 * 0.02562 * 6 5 4 33 33 H 1.07992 * 119.97506 * 179.70509 * 7 6 5 34 34 H 1.07995 * 119.93908 * 180.02562 * 8 7 6 35 35 H 1.07999 * 119.97158 * 179.97438 * 9 8 7 36 36 H 1.08998 * 109.47498 * 140.00101 * 11 10 9 37 37 H 1.09002 * 109.46794 * 19.99598 * 11 10 9 38 38 H 0.96995 * 120.00050 * 344.72224 * 12 11 10 39 39 H 1.09000 * 109.46873 * 300.00475 * 16 13 12 40 40 H 1.09004 * 109.46684 * 59.99917 * 16 13 12 41 41 H 1.09002 * 109.47112 * 300.00009 * 17 16 13 42 42 H 1.08998 * 109.46926 * 60.00162 * 17 16 13 43 43 H 1.09002 * 109.47138 * 299.99737 * 18 17 16 44 44 H 1.08998 * 109.47509 * 60.00264 * 18 17 16 45 45 H 0.97006 * 120.00532 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1268 1.2412 0.9526 5 6 3.9098 2.3449 1.0782 6 6 3.6567 3.4683 0.3041 7 6 4.4581 4.5863 0.4288 8 6 5.5079 4.5891 1.3291 9 6 5.7583 3.4733 2.1058 10 6 4.9603 2.3520 1.9840 11 6 5.2343 1.1357 2.8306 12 7 5.9660 0.1441 2.0384 13 16 6.7236 -1.1215 2.7911 14 8 7.3358 -1.8438 1.7315 15 8 7.5053 -0.5080 3.8069 16 6 5.3734 -2.0869 3.5229 17 6 5.9519 -3.2993 4.2552 18 6 4.8129 -4.1138 4.8719 19 6 5.3826 -5.3083 5.5927 20 1 6.4504 -5.4701 5.6096 21 6 4.5410 -6.1941 6.2314 22 7 3.2409 -5.9969 6.2111 23 14 5.2473 -7.6744 7.1255 24 1 6.7270 -7.6682 7.0009 25 1 4.8715 -7.6113 8.5608 26 1 4.7048 -8.9200 6.5260 27 1 -0.5400 -0.9352 -0.0004 28 1 -0.5399 0.9353 0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.3855 2.1161 0.2660 31 1 2.4755 1.4868 -0.9927 32 1 2.8367 3.4667 -0.3988 33 1 4.2645 5.4592 -0.1768 34 1 6.1330 5.4644 1.4254 35 1 6.5790 3.4777 2.8078 36 1 4.2903 0.7071 3.1671 37 1 5.8321 1.4225 3.6957 38 1 6.0034 0.2266 1.0726 39 1 4.8226 -1.4646 4.2282 40 1 4.7006 -2.4258 2.7350 41 1 6.5024 -3.9214 3.5495 42 1 6.6249 -2.9608 5.0430 43 1 4.2621 -3.4919 5.5775 44 1 4.1402 -4.4523 4.0838 45 1 2.6487 -6.6203 6.6602 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000111355649.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:20:21 Heat of formation + Delta-G solvation = -79.071142 kcal Electronic energy + Delta-G solvation = -26662.350388 eV Core-core repulsion = 22772.471940 eV Total energy + Delta-G solvation = -3889.878448 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.63878 -38.00841 -36.83018 -35.72248 -35.42368 -34.62371 -34.36355 -32.15444 -31.30847 -30.20797 -27.76367 -27.01406 -25.82168 -23.68342 -22.60260 -21.89682 -20.62473 -20.19215 -19.12832 -18.47327 -17.48608 -16.84971 -16.63711 -16.42613 -16.14104 -15.70442 -15.60549 -15.04422 -14.89995 -14.73888 -14.46275 -14.08462 -13.73310 -13.60306 -13.10940 -13.01824 -12.84083 -12.55203 -12.23656 -12.08104 -11.89100 -11.78362 -11.73850 -11.70112 -11.55316 -11.46620 -11.19332 -11.02243 -10.91695 -10.80209 -10.39017 -9.91668 -9.86975 -9.64345 -9.26839 -9.26322 -9.02529 -8.50028 -8.38999 -6.03670 -4.06401 0.50092 0.97594 1.10940 1.71078 2.94105 3.01316 3.30765 3.38202 3.43359 3.47531 4.01851 4.29590 4.37647 4.44456 4.51874 4.53208 4.63553 4.70784 4.77133 4.95075 4.98663 5.07701 5.14263 5.24487 5.27513 5.32923 5.35520 5.41412 5.52849 5.68248 5.76980 5.96224 5.98738 6.10235 6.19540 6.20813 6.24014 6.31780 6.45893 6.50317 6.91151 7.00084 7.07061 7.60429 7.70515 7.94836 8.35597 9.00172 9.58191 11.07606 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012165 B = 0.002715 C = 0.002345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2301.144752 B =10308.772356 C =11939.362681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.159 4.159 3 C 0.087 3.913 4 O -0.302 6.302 5 C 0.145 3.855 6 C -0.214 4.214 7 C -0.075 4.075 8 C -0.160 4.160 9 C -0.062 4.062 10 C -0.128 4.128 11 C 0.165 3.835 12 N -1.117 6.117 13 S 2.601 3.399 14 O -0.965 6.965 15 O -0.964 6.964 16 C -0.608 4.608 17 C -0.106 4.106 18 C 0.030 3.970 19 C -0.524 4.524 20 H 0.058 0.942 21 C 0.057 3.943 22 N -0.895 5.895 23 Si 0.894 3.106 24 H -0.272 1.272 25 H -0.283 1.283 26 H -0.284 1.284 27 H 0.110 0.890 28 H 0.098 0.902 29 H 0.124 0.876 30 H 0.067 0.933 31 H 0.072 0.928 32 H 0.128 0.872 33 H 0.124 0.876 34 H 0.125 0.875 35 H 0.134 0.866 36 H 0.077 0.923 37 H 0.088 0.912 38 H 0.414 0.586 39 H 0.127 0.873 40 H 0.129 0.871 41 H 0.065 0.935 42 H 0.065 0.935 43 H 0.021 0.979 44 H 0.020 0.980 45 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.368 22.999 -14.534 27.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.177 4.177 3 C 0.013 3.987 4 O -0.215 6.215 5 C 0.099 3.901 6 C -0.232 4.232 7 C -0.094 4.094 8 C -0.179 4.179 9 C -0.081 4.081 10 C -0.130 4.130 11 C 0.039 3.961 12 N -0.875 5.875 13 S 2.697 3.303 14 O -0.955 6.955 15 O -0.954 6.954 16 C -0.740 4.740 17 C -0.145 4.145 18 C -0.008 4.008 19 C -0.563 4.563 20 H 0.077 0.923 21 C -0.144 4.144 22 N -0.535 5.535 23 Si 0.721 3.279 24 H -0.196 1.196 25 H -0.210 1.210 26 H -0.210 1.210 27 H 0.128 0.872 28 H 0.116 0.884 29 H 0.141 0.859 30 H 0.085 0.915 31 H 0.090 0.910 32 H 0.146 0.854 33 H 0.142 0.858 34 H 0.143 0.857 35 H 0.152 0.848 36 H 0.095 0.905 37 H 0.106 0.894 38 H 0.248 0.752 39 H 0.145 0.855 40 H 0.147 0.853 41 H 0.084 0.916 42 H 0.084 0.916 43 H 0.039 0.961 44 H 0.039 0.961 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.582 22.591 -14.154 26.783 hybrid contribution -0.711 -0.659 -0.058 0.971 sum -3.293 21.933 -14.212 26.341 Atomic orbital electron populations 1.23903 0.95425 1.02633 0.98575 1.22690 0.95730 0.97827 1.01468 1.21857 0.87761 0.97070 0.92039 1.86163 1.41828 1.35186 1.58349 1.18856 0.90709 0.86122 0.94415 1.21238 1.03796 0.94352 1.03850 1.20979 0.94092 0.97261 0.97024 1.21074 0.99424 0.98973 0.98391 1.21043 0.97459 0.91642 0.97934 1.19183 0.96590 0.97082 1.00175 1.20009 0.96964 0.86337 0.92747 1.55698 1.71847 1.41423 1.18527 1.05253 0.76455 0.74047 0.74513 1.93572 1.74402 1.72926 1.54602 1.93558 1.66562 1.74681 1.60554 1.30534 1.18363 1.12581 1.12519 1.21497 1.01303 0.92950 0.98770 1.19064 0.92112 0.93947 0.95665 1.21304 0.93485 1.08420 1.33071 0.92326 1.25019 0.94838 0.98155 0.96407 1.69968 1.02392 1.37184 1.43916 0.86507 0.79389 0.82553 0.79414 1.19601 1.20960 1.20970 0.87199 0.88390 0.85857 0.91504 0.91031 0.85436 0.85794 0.85684 0.84777 0.90480 0.89367 0.75211 0.85510 0.85271 0.91631 0.91590 0.96110 0.96139 0.92990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.18 14.31 29.01 0.42 -0.76 16 2 C -0.16 -1.29 9.89 -36.03 -0.36 -1.65 16 3 C 0.09 0.67 5.15 36.01 0.19 0.85 16 4 O -0.30 -3.07 9.36 -19.44 -0.18 -3.25 16 5 C 0.15 1.43 6.66 -39.22 -0.26 1.17 16 6 C -0.21 -1.72 9.04 -39.43 -0.36 -2.08 16 7 C -0.08 -0.55 10.04 -39.60 -0.40 -0.95 16 8 C -0.16 -1.23 10.04 -39.56 -0.40 -1.62 16 9 C -0.06 -0.55 9.66 -39.61 -0.38 -0.93 16 10 C -0.13 -1.30 5.29 -104.47 -0.55 -1.85 16 11 C 0.17 1.80 5.92 -5.19 -0.03 1.76 16 12 N -1.12 -13.31 5.88 -11.65 -0.07 -13.38 16 13 S 2.60 39.68 5.46 -107.50 -0.59 39.10 16 14 O -0.96 -17.56 18.08 -57.54 -1.04 -18.60 16 15 O -0.96 -17.20 17.50 -57.54 -1.01 -18.21 16 16 C -0.61 -9.68 6.07 37.16 0.23 -9.45 16 17 C -0.11 -2.19 5.16 -26.73 -0.14 -2.33 16 18 C 0.03 0.78 4.97 -27.88 -0.14 0.64 16 19 C -0.52 -14.92 9.11 -34.44 -0.31 -15.23 16 20 H 0.06 1.62 7.74 -52.48 -0.41 1.22 16 21 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 22 N -0.90 -26.76 13.29 55.43 0.74 -26.02 16 23 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 24 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 25 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 26 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 27 H 0.11 0.71 8.06 -52.49 -0.42 0.29 16 28 H 0.10 0.55 7.90 -52.49 -0.41 0.13 16 29 H 0.12 1.08 8.06 -52.49 -0.42 0.65 16 30 H 0.07 0.42 7.37 -51.93 -0.38 0.04 16 31 H 0.07 0.45 7.67 -51.93 -0.40 0.05 16 32 H 0.13 0.78 6.30 -52.49 -0.33 0.45 16 33 H 0.12 0.61 8.06 -52.49 -0.42 0.19 16 34 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 35 H 0.13 1.03 8.04 -52.49 -0.42 0.61 16 36 H 0.08 0.80 7.86 -51.93 -0.41 0.39 16 37 H 0.09 0.92 7.56 -51.93 -0.39 0.52 16 38 H 0.41 4.50 8.61 -34.47 -0.30 4.20 16 39 H 0.13 1.80 8.14 -51.92 -0.42 1.38 16 40 H 0.13 1.88 8.14 -51.92 -0.42 1.45 16 41 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 42 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 43 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 395.64 15.07 5.96 5.96 Total: -1.00 -35.96 395.64 -10.62 -46.58 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: -6.81 Total: 1.99 kcal Atomic # 6 Polarization: -28.29 SS G_CDS: -2.60 Total: -30.89 kcal Atomic # 7 Polarization: -40.07 SS G_CDS: 0.67 Total: -39.40 kcal Atomic # 8 Polarization: -37.83 SS G_CDS: -2.23 Total: -40.06 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Atomic # 16 Polarization: 39.68 SS G_CDS: -0.59 Total: 39.10 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -35.96 -10.62 -46.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111355649.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.495 kcal (2) G-P(sol) polarization free energy of solvation -35.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds