Wall clock time and date at job start Tue Mar 31 2020 23:20:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50700 * 119.99892 * 2 1 4 4 O 1.42901 * 109.46860 * 135.00304 * 3 2 1 5 5 C 1.35904 * 117.00126 * 179.97438 * 4 3 2 6 6 C 1.38758 * 120.05175 * 0.25077 * 5 4 3 7 7 C 1.38123 * 119.94156 * 180.32208 * 6 5 4 8 8 C 1.38296 * 120.05444 * 359.67542 * 7 6 5 9 9 C 1.38240 * 120.11004 * 0.03117 * 8 7 6 10 10 C 1.38165 * 120.05959 * 0.02562 * 9 8 7 11 11 C 1.50701 * 120.03120 * 179.97438 * 10 9 8 12 12 N 1.46506 * 109.46793 * 260.00109 * 11 10 9 13 13 S 1.65597 * 119.99791 * 165.00139 * 12 11 10 14 14 O 1.42101 * 104.27612 * 181.07220 * 13 12 11 15 15 O 1.42101 * 104.27805 * 308.92463 * 13 12 11 16 16 C 1.81397 * 104.45432 * 64.99519 * 13 12 11 17 17 C 1.52999 * 109.47238 * 179.97438 * 16 13 12 18 18 C 1.53004 * 109.46697 * 180.02562 * 17 16 13 19 19 C 1.50700 * 109.46889 * 179.97438 * 18 17 16 20 20 H 1.08008 * 119.99751 * 0.02562 * 19 18 17 21 21 C 1.37877 * 120.00174 * 179.97438 * 19 18 17 22 22 N 1.31507 * 119.99945 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00094 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47044 * 0.02562 * 23 21 19 25 25 H 1.48499 * 109.46932 * 120.00328 * 23 21 19 26 26 H 1.48498 * 109.47306 * 240.00413 * 23 21 19 27 27 H 1.07993 * 120.00070 * 179.97438 * 1 2 3 28 28 H 1.07998 * 119.99624 * 359.97438 * 1 2 3 29 29 H 1.08001 * 119.99687 * 180.02562 * 2 1 3 30 30 H 1.09000 * 109.47240 * 15.00366 * 3 2 1 31 31 H 1.09003 * 109.46935 * 255.00205 * 3 2 1 32 32 H 1.07999 * 120.02719 * 0.02562 * 6 5 4 33 33 H 1.07992 * 119.97506 * 179.70509 * 7 6 5 34 34 H 1.07995 * 119.93908 * 180.02562 * 8 7 6 35 35 H 1.07999 * 119.97158 * 179.97438 * 9 8 7 36 36 H 1.08998 * 109.47498 * 140.00101 * 11 10 9 37 37 H 1.09002 * 109.46794 * 19.99598 * 11 10 9 38 38 H 0.96995 * 120.00050 * 344.72224 * 12 11 10 39 39 H 1.09000 * 109.46873 * 300.00475 * 16 13 12 40 40 H 1.09004 * 109.46684 * 59.99917 * 16 13 12 41 41 H 1.09002 * 109.47112 * 300.00009 * 17 16 13 42 42 H 1.08998 * 109.46926 * 60.00162 * 17 16 13 43 43 H 1.09002 * 109.47138 * 299.99737 * 18 17 16 44 44 H 1.08998 * 109.47509 * 60.00264 * 18 17 16 45 45 H 0.97006 * 120.00532 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1268 1.2412 0.9526 5 6 3.9098 2.3449 1.0782 6 6 3.6567 3.4683 0.3041 7 6 4.4581 4.5863 0.4288 8 6 5.5079 4.5891 1.3291 9 6 5.7583 3.4733 2.1058 10 6 4.9603 2.3520 1.9840 11 6 5.2343 1.1357 2.8306 12 7 5.9660 0.1441 2.0384 13 16 6.7236 -1.1215 2.7911 14 8 7.3358 -1.8438 1.7315 15 8 7.5053 -0.5080 3.8069 16 6 5.3734 -2.0869 3.5229 17 6 5.9519 -3.2993 4.2552 18 6 4.8129 -4.1138 4.8719 19 6 5.3826 -5.3083 5.5927 20 1 6.4504 -5.4701 5.6096 21 6 4.5410 -6.1941 6.2314 22 7 3.2409 -5.9969 6.2111 23 14 5.2473 -7.6744 7.1255 24 1 6.7270 -7.6682 7.0009 25 1 4.8715 -7.6113 8.5608 26 1 4.7048 -8.9200 6.5260 27 1 -0.5400 -0.9352 -0.0004 28 1 -0.5399 0.9353 0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.3855 2.1161 0.2660 31 1 2.4755 1.4868 -0.9927 32 1 2.8367 3.4667 -0.3988 33 1 4.2645 5.4592 -0.1768 34 1 6.1330 5.4644 1.4254 35 1 6.5790 3.4777 2.8078 36 1 4.2903 0.7071 3.1671 37 1 5.8321 1.4225 3.6957 38 1 6.0034 0.2266 1.0726 39 1 4.8226 -1.4646 4.2282 40 1 4.7006 -2.4258 2.7350 41 1 6.5024 -3.9214 3.5495 42 1 6.6249 -2.9608 5.0430 43 1 4.2621 -3.4919 5.5775 44 1 4.1402 -4.4523 4.0838 45 1 2.6487 -6.6203 6.6602 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000111355649.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:20:20 Heat of formation + Delta-G solvation = -103.143438 kcal Electronic energy + Delta-G solvation = -26663.394241 eV Core-core repulsion = 22772.471940 eV Total energy + Delta-G solvation = -3890.922301 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.27411 -38.64997 -38.18461 -37.07040 -36.46783 -36.33468 -34.95324 -34.16561 -32.03138 -30.82641 -29.65615 -27.59569 -26.60860 -25.62178 -23.21452 -22.57190 -22.40862 -20.78353 -20.36039 -19.13356 -18.72143 -18.51674 -17.65812 -17.38191 -17.10783 -16.80434 -16.56907 -16.46245 -16.04108 -15.65866 -15.49949 -15.30452 -14.52496 -14.43717 -14.34670 -14.09266 -13.83215 -13.62030 -13.54186 -13.44491 -13.21168 -13.13905 -13.08560 -12.95623 -12.77588 -12.60654 -12.39923 -12.16129 -12.13314 -12.08269 -11.75668 -11.66066 -11.37730 -11.12857 -10.58314 -10.44200 -10.36772 -9.89064 -9.13453 -8.22849 -6.33871 -0.75106 0.31597 0.49039 1.13288 1.39519 1.39989 1.53561 1.82776 2.39711 2.41224 2.74339 2.83266 3.10615 3.23265 3.63974 3.76288 3.80268 3.92283 3.93968 4.06699 4.15516 4.23724 4.36302 4.37407 4.40128 4.45586 4.55524 4.63773 4.65856 4.76906 4.86753 4.96859 4.97320 5.05619 5.07890 5.37336 5.45349 5.49938 5.60287 5.61586 5.62610 5.67089 5.79327 5.87889 6.05848 6.19521 6.45413 6.81853 7.35447 8.88953 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012165 B = 0.002715 C = 0.002345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2301.144752 B =10308.772356 C =11939.362681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.180 4.180 3 C 0.085 3.915 4 O -0.322 6.322 5 C 0.131 3.869 6 C -0.217 4.217 7 C -0.074 4.074 8 C -0.163 4.163 9 C -0.073 4.073 10 C -0.147 4.147 11 C 0.159 3.841 12 N -1.103 6.103 13 S 2.633 3.367 14 O -0.993 6.993 15 O -0.987 6.987 16 C -0.609 4.609 17 C -0.106 4.106 18 C 0.032 3.968 19 C -0.551 4.551 20 H 0.060 0.940 21 C 0.002 3.998 22 N -0.930 5.930 23 Si 0.964 3.036 24 H -0.264 1.264 25 H -0.276 1.276 26 H -0.276 1.276 27 H 0.112 0.888 28 H 0.115 0.885 29 H 0.109 0.891 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.147 0.853 33 H 0.151 0.849 34 H 0.146 0.854 35 H 0.140 0.860 36 H 0.080 0.920 37 H 0.091 0.909 38 H 0.421 0.579 39 H 0.144 0.856 40 H 0.142 0.858 41 H 0.065 0.935 42 H 0.068 0.932 43 H 0.003 0.997 44 H 0.001 0.999 45 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.388 24.469 -15.194 29.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.198 4.198 3 C 0.011 3.989 4 O -0.236 6.236 5 C 0.085 3.915 6 C -0.235 4.235 7 C -0.092 4.092 8 C -0.181 4.181 9 C -0.091 4.091 10 C -0.149 4.149 11 C 0.034 3.966 12 N -0.863 5.863 13 S 2.728 3.272 14 O -0.983 6.983 15 O -0.977 6.977 16 C -0.740 4.740 17 C -0.145 4.145 18 C -0.007 4.007 19 C -0.589 4.589 20 H 0.078 0.922 21 C -0.196 4.196 22 N -0.570 5.570 23 Si 0.788 3.212 24 H -0.188 1.188 25 H -0.202 1.202 26 H -0.202 1.202 27 H 0.130 0.870 28 H 0.133 0.867 29 H 0.127 0.873 30 H 0.099 0.901 31 H 0.102 0.898 32 H 0.164 0.836 33 H 0.169 0.831 34 H 0.164 0.836 35 H 0.158 0.842 36 H 0.098 0.902 37 H 0.109 0.891 38 H 0.257 0.743 39 H 0.162 0.838 40 H 0.161 0.839 41 H 0.084 0.916 42 H 0.086 0.914 43 H 0.021 0.979 44 H 0.020 0.980 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.599 24.057 -14.819 28.375 hybrid contribution -0.785 -1.018 0.097 1.289 sum -3.384 23.039 -14.722 27.550 Atomic orbital electron populations 1.24090 0.95115 1.03595 0.96979 1.22736 0.96284 0.97790 1.03029 1.21989 0.87542 0.97091 0.92261 1.86126 1.42514 1.35776 1.59174 1.19031 0.90852 0.86686 0.94955 1.21511 1.04396 0.93930 1.03707 1.21354 0.93325 0.97812 0.96706 1.21379 0.99713 0.99166 0.97850 1.21234 0.97584 0.91847 0.98474 1.19190 0.97675 0.97069 1.00998 1.20164 0.96903 0.86601 0.92970 1.55353 1.71652 1.40396 1.18900 1.04133 0.75721 0.73783 0.73559 1.93528 1.75269 1.74076 1.55447 1.93525 1.67418 1.75150 1.61581 1.30497 1.19185 1.11215 1.13071 1.21320 0.99731 0.94299 0.99172 1.18957 0.93217 0.93786 0.94715 1.21768 0.93828 1.09670 1.33641 0.92151 1.25943 0.95183 1.01288 0.97192 1.70079 1.03703 1.38474 1.44757 0.85416 0.78927 0.78642 0.78195 1.18780 1.20163 1.20203 0.87019 0.86667 0.87277 0.90057 0.89836 0.83578 0.83130 0.83610 0.84188 0.90181 0.89079 0.74328 0.83805 0.83935 0.91599 0.91354 0.97865 0.98025 0.92632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.09 14.31 67.78 0.97 -1.12 16 2 C -0.18 -2.87 9.89 25.64 0.25 -2.62 16 3 C 0.09 1.21 5.15 71.24 0.37 1.57 16 4 O -0.32 -6.33 9.36 -92.47 -0.87 -7.19 16 5 C 0.13 2.42 6.66 22.51 0.15 2.57 16 6 C -0.22 -3.02 9.04 22.37 0.20 -2.82 16 7 C -0.07 -0.87 10.04 22.26 0.22 -0.65 16 8 C -0.16 -2.12 10.04 22.28 0.22 -1.90 16 9 C -0.07 -1.20 9.66 22.25 0.22 -0.98 16 10 C -0.15 -2.85 5.29 -19.77 -0.10 -2.95 16 11 C 0.16 3.37 5.92 85.63 0.51 3.88 16 12 N -1.10 -25.68 5.88 -190.78 -1.12 -26.80 16 13 S 2.63 79.50 5.46 -56.49 -0.31 79.19 16 14 O -0.99 -35.94 18.08 -127.65 -2.31 -38.24 16 15 O -0.99 -34.85 17.50 -127.65 -2.23 -37.08 16 16 C -0.61 -19.34 6.07 71.98 0.44 -18.90 16 17 C -0.11 -4.44 5.16 30.60 0.16 -4.28 16 18 C 0.03 1.66 4.97 29.85 0.15 1.81 16 19 C -0.55 -31.82 9.11 25.60 0.23 -31.58 16 20 H 0.06 3.37 7.74 -2.91 -0.02 3.35 16 21 C 0.00 0.12 5.46 84.66 0.46 0.58 16 22 N -0.93 -56.33 13.29 21.45 0.28 -56.05 16 23 Si 0.96 44.67 29.54 68.60 2.03 46.70 16 24 H -0.26 -11.78 7.11 99.48 0.71 -11.08 16 25 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 26 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 27 H 0.11 1.37 8.06 -2.91 -0.02 1.35 16 28 H 0.12 1.07 7.90 -2.91 -0.02 1.05 16 29 H 0.11 1.99 8.06 -2.91 -0.02 1.97 16 30 H 0.08 0.88 7.37 -2.39 -0.02 0.86 16 31 H 0.08 0.94 7.67 -2.39 -0.02 0.92 16 32 H 0.15 1.39 6.30 -2.91 -0.02 1.37 16 33 H 0.15 0.93 8.06 -2.91 -0.02 0.91 16 34 H 0.15 1.22 8.06 -2.91 -0.02 1.20 16 35 H 0.14 2.01 8.04 -2.91 -0.02 1.99 16 36 H 0.08 1.63 7.86 -2.39 -0.02 1.61 16 37 H 0.09 1.86 7.56 -2.39 -0.02 1.84 16 38 H 0.42 8.91 8.61 -96.75 -0.83 8.07 16 39 H 0.14 4.04 8.14 -2.39 -0.02 4.02 16 40 H 0.14 4.13 8.14 -2.39 -0.02 4.11 16 41 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 42 H 0.07 2.78 8.14 -2.39 -0.02 2.76 16 43 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 44 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 45 H 0.26 14.98 8.31 -92.70 -0.77 14.21 16 Total: -1.00 -76.97 395.64 0.07 -76.90 By element: Atomic # 1 Polarization: 19.83 SS G_CDS: 0.15 Total: 19.98 kcal Atomic # 6 Polarization: -61.85 SS G_CDS: 4.45 Total: -57.40 kcal Atomic # 7 Polarization: -82.01 SS G_CDS: -0.84 Total: -82.85 kcal Atomic # 8 Polarization: -77.11 SS G_CDS: -5.41 Total: -82.52 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal Atomic # 16 Polarization: 79.50 SS G_CDS: -0.31 Total: 79.19 kcal Total: -76.97 0.07 -76.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111355649.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.242 kcal (2) G-P(sol) polarization free energy of solvation -76.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds