Wall clock time and date at job start Tue Mar 31 2020 22:03:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46866 * 2 1 4 4 C 1.52994 * 109.46656 * 240.00367 * 2 1 3 5 5 S 1.81391 * 109.47077 * 120.00166 * 2 1 3 6 6 O 1.42104 * 109.47344 * 303.60818 * 5 2 1 7 7 C 1.81396 * 103.00201 * 59.99746 * 5 2 1 8 8 C 1.53003 * 109.47068 * 179.97438 * 7 5 2 9 9 N 1.46508 * 109.47061 * 179.97438 * 8 7 5 10 10 C 1.34775 * 119.99760 * 179.97438 * 9 8 7 11 11 O 1.21590 * 119.99975 * 0.02562 * 10 9 8 12 12 C 1.47538 * 119.99618 * 180.02562 * 10 9 8 13 13 C 1.39667 * 120.19893 * 0.02562 * 12 10 9 14 14 C 1.37827 * 119.91968 * 180.02562 * 13 12 10 15 15 C 1.38567 * 120.32166 * 359.97438 * 14 13 12 16 16 C 1.38018 * 120.40580 * 0.02562 * 15 14 13 17 17 C 1.38837 * 120.07003 * 359.97438 * 16 15 14 18 18 O 1.35520 * 120.15759 * 179.97438 * 17 16 15 19 19 C 1.34815 * 117.00282 * 354.39868 * 18 17 16 20 20 H 1.07997 * 119.99797 * 5.06669 * 19 18 17 21 21 C 1.38704 * 119.99765 * 185.06035 * 19 18 17 22 22 N 1.31514 * 119.99893 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99619 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47217 * 60.00591 * 23 21 19 25 25 H 1.48497 * 109.46972 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.47353 * 300.00311 * 23 21 19 27 27 H 1.09002 * 109.46986 * 300.00120 * 1 2 3 28 28 H 1.08999 * 109.47399 * 59.99497 * 1 2 3 29 29 H 1.09000 * 109.46998 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46942 * 180.02562 * 3 2 1 31 31 H 1.08999 * 109.47513 * 299.99871 * 3 2 1 32 32 H 1.09002 * 109.47416 * 60.00143 * 3 2 1 33 33 H 1.09000 * 109.46914 * 299.99435 * 4 2 1 34 34 H 1.09001 * 109.47811 * 59.99759 * 4 2 1 35 35 H 1.09006 * 109.47048 * 179.97438 * 4 2 1 36 36 H 1.09000 * 109.47138 * 60.00366 * 7 5 2 37 37 H 1.08994 * 109.47389 * 299.99761 * 7 5 2 38 38 H 1.09003 * 109.46908 * 60.00537 * 8 7 5 39 39 H 1.08996 * 109.47761 * 300.00298 * 8 7 5 40 40 H 0.97000 * 119.99784 * 0.02562 * 9 8 7 41 41 H 1.08005 * 120.03854 * 0.02562 * 13 12 10 42 42 H 1.08006 * 119.83455 * 179.97438 * 14 13 12 43 43 H 1.08005 * 119.79495 * 179.74708 * 15 14 13 44 44 H 1.08005 * 119.96966 * 179.97438 * 16 15 14 45 45 H 0.97008 * 119.99558 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 16 2.1347 -0.8551 1.4810 6 8 1.5934 -0.2358 2.6398 7 6 1.4375 -2.5204 1.3040 8 6 1.8635 -3.3809 2.4952 9 7 1.2999 -4.7257 2.3526 10 6 1.5445 -5.6619 3.2907 11 8 2.2326 -5.3902 4.2557 12 6 0.9774 -7.0162 3.1468 13 6 0.1869 -7.3328 2.0397 14 6 -0.3405 -8.5997 1.9113 15 6 -0.0900 -9.5628 2.8755 16 6 0.6893 -9.2645 3.9749 17 6 1.2289 -7.9936 4.1209 18 8 1.9939 -7.6986 5.1999 19 6 2.0985 -8.6458 6.1535 20 1 1.6532 -9.6177 6.0003 21 6 2.7783 -8.3721 7.3311 22 7 3.3203 -7.1885 7.5177 23 14 2.9239 -9.6849 8.6521 24 1 3.6287 -10.8688 8.0979 25 1 3.6913 -9.1456 9.8034 26 1 1.5672 -10.0838 9.1053 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.6767 1.9564 0.8900 33 1 1.6766 -1.7488 -1.2492 34 1 1.6766 -0.2074 -2.1393 35 1 3.1300 -0.7208 -1.2496 36 1 1.8031 -2.9712 0.3814 37 1 0.3498 -2.4573 1.2715 38 1 1.4981 -2.9303 3.4181 39 1 2.9511 -3.4440 2.5275 40 1 0.7512 -4.9424 1.5825 41 1 -0.0109 -6.5858 1.2852 42 1 -0.9519 -8.8429 1.0548 43 1 -0.5109 -10.5517 2.7684 44 1 0.8797 -10.0204 4.7224 45 1 3.7961 -6.9973 8.3412 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000112304057.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:03:49 Heat of formation + Delta-G solvation = -77.772786 kcal Electronic energy + Delta-G solvation = -26690.957722 eV Core-core repulsion = 22801.135575 eV Total energy + Delta-G solvation = -3889.822147 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -39.57993 -38.09965 -36.58767 -36.33685 -35.89595 -34.76986 -32.33578 -31.32763 -29.67050 -28.91448 -27.74656 -27.62265 -25.39417 -23.87521 -22.48587 -21.36103 -20.99828 -19.97068 -18.04601 -17.68111 -17.27993 -16.42429 -16.15186 -15.61687 -15.34687 -14.94045 -14.71634 -14.64281 -14.31093 -14.15685 -14.11392 -13.98330 -13.67716 -13.41541 -12.98829 -12.71726 -12.67590 -12.59111 -12.48912 -12.18001 -12.11756 -12.02468 -11.70577 -11.50665 -11.40746 -11.31865 -11.22222 -11.12554 -10.87814 -10.80016 -10.46985 -10.14549 -9.56830 -8.87375 -8.85596 -8.57972 -8.38700 -8.27204 -7.30846 -6.43157 -4.03346 1.21145 1.71656 2.31795 2.33796 3.12537 3.14907 3.17413 3.51800 3.75302 3.84186 3.94607 4.31078 4.38098 4.63454 4.65532 4.73609 4.80821 5.07161 5.15310 5.18232 5.18314 5.30720 5.33255 5.39934 5.43145 5.45274 5.50104 5.53136 5.69171 5.71053 5.75947 5.80827 5.85111 5.93964 6.11426 6.12139 6.56041 6.68826 6.89925 6.92239 7.05820 7.23872 7.29424 7.69366 7.92890 8.11692 8.95975 9.09699 9.68228 10.70494 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.015456 B = 0.002530 C = 0.002219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1811.192040 B =11066.354790 C =12613.656958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.390 4.390 3 C -0.124 4.124 4 C -0.123 4.123 5 S 1.262 4.738 6 O -0.835 6.835 7 C -0.464 4.464 8 C 0.146 3.854 9 N -0.741 5.741 10 C 0.553 3.447 11 O -0.499 6.499 12 C -0.227 4.227 13 C -0.039 4.039 14 C -0.232 4.232 15 C -0.051 4.051 16 C -0.238 4.238 17 C 0.189 3.811 18 O -0.123 6.123 19 C -0.405 4.405 20 H 0.094 0.906 21 C 0.045 3.955 22 N -0.832 5.832 23 Si 0.941 3.059 24 H -0.268 1.268 25 H -0.277 1.277 26 H -0.269 1.269 27 H 0.060 0.940 28 H 0.062 0.938 29 H 0.058 0.942 30 H 0.068 0.932 31 H 0.064 0.936 32 H 0.059 0.941 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.072 0.928 36 H 0.124 0.876 37 H 0.093 0.907 38 H 0.067 0.933 39 H 0.075 0.925 40 H 0.392 0.608 41 H 0.111 0.889 42 H 0.109 0.891 43 H 0.110 0.890 44 H 0.132 0.868 45 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.855 9.962 -19.334 21.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.487 4.487 3 C -0.183 4.183 4 C -0.181 4.181 5 S 1.458 4.542 6 O -0.830 6.830 7 C -0.601 4.601 8 C 0.021 3.979 9 N -0.398 5.398 10 C 0.342 3.658 11 O -0.373 6.373 12 C -0.232 4.232 13 C -0.057 4.057 14 C -0.251 4.251 15 C -0.069 4.069 16 C -0.257 4.257 17 C 0.129 3.871 18 O -0.021 6.021 19 C -0.481 4.481 20 H 0.111 0.889 21 C -0.163 4.163 22 N -0.463 5.463 23 Si 0.765 3.235 24 H -0.193 1.193 25 H -0.201 1.201 26 H -0.194 1.194 27 H 0.079 0.921 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.091 0.909 36 H 0.142 0.858 37 H 0.112 0.888 38 H 0.086 0.914 39 H 0.093 0.907 40 H 0.227 0.773 41 H 0.128 0.872 42 H 0.127 0.873 43 H 0.128 0.872 44 H 0.149 0.851 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.471 10.901 -17.553 20.668 hybrid contribution -2.727 -0.817 -0.021 2.847 sum -3.199 10.083 -17.574 20.512 Atomic orbital electron populations 1.21928 0.92919 1.02307 1.03047 1.27204 1.02286 1.05475 1.13773 1.21528 1.01368 0.92517 1.02842 1.21592 1.01716 0.99763 0.95037 1.70814 1.15047 0.84941 0.83399 1.93141 1.78966 1.71478 1.39383 1.28034 1.09639 1.17240 1.05159 1.20653 0.99116 0.82462 0.95702 1.45904 1.55993 1.11174 1.26778 1.18269 0.80889 0.84385 0.82271 1.90957 1.36709 1.80327 1.29299 1.18830 1.11258 0.93442 0.99651 1.20745 0.94243 0.96078 0.94679 1.20449 1.08462 0.94420 1.01758 1.20890 0.95070 0.98029 0.92960 1.21157 1.05727 0.97430 1.01360 1.19276 0.88285 0.91485 0.88085 1.84173 1.53547 1.40579 1.23756 1.21454 1.37296 0.93896 0.95415 0.88911 1.25391 0.95832 0.97571 0.97524 1.70120 1.30197 1.20094 1.25853 0.85794 0.78909 0.79473 0.79309 1.19350 1.20138 1.19393 0.92131 0.91921 0.92319 0.91338 0.91657 0.92180 0.91908 0.91939 0.90939 0.85791 0.88780 0.91440 0.90676 0.77320 0.87152 0.87324 0.87193 0.85060 0.91754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.19 8.29 37.16 0.31 -0.88 16 2 C -0.39 -2.67 0.94 -90.62 -0.08 -2.76 16 3 C -0.12 -0.81 8.48 37.16 0.32 -0.49 16 4 C -0.12 -0.53 8.32 37.15 0.31 -0.23 16 5 S 1.26 11.21 12.09 -107.50 -1.30 9.91 16 6 O -0.83 -13.08 18.10 -35.23 -0.64 -13.72 16 7 C -0.46 -4.29 5.15 37.16 0.19 -4.10 16 8 C 0.15 2.10 5.68 -4.04 -0.02 2.07 16 9 N -0.74 -11.98 5.51 -61.34 -0.34 -12.32 16 10 C 0.55 12.30 7.76 -12.47 -0.10 12.20 16 11 O -0.50 -13.87 15.17 -16.57 -0.25 -14.12 16 12 C -0.23 -4.96 5.89 -104.81 -0.62 -5.58 16 13 C -0.04 -0.66 9.53 -39.20 -0.37 -1.03 16 14 C -0.23 -3.79 10.02 -39.61 -0.40 -4.19 16 15 C -0.05 -0.90 10.03 -39.54 -0.40 -1.30 16 16 C -0.24 -5.12 9.16 -39.44 -0.36 -5.48 16 17 C 0.19 4.72 6.66 -38.60 -0.26 4.46 16 18 O -0.12 -3.65 7.84 -21.06 -0.16 -3.81 16 19 C -0.40 -11.53 9.49 30.90 0.29 -11.24 16 20 H 0.09 2.39 5.21 -52.49 -0.27 2.11 16 21 C 0.04 1.26 5.49 -17.52 -0.10 1.16 16 22 N -0.83 -25.29 13.67 55.48 0.76 -24.53 16 23 Si 0.94 20.65 29.55 -169.99 -5.02 15.62 16 24 H -0.27 -5.65 7.11 56.52 0.40 -5.24 16 25 H -0.28 -5.94 7.11 56.52 0.40 -5.53 16 26 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.45 6.68 -51.93 -0.35 0.11 16 30 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.06 0.24 6.68 -51.93 -0.35 -0.11 16 34 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 35 H 0.07 0.18 8.14 -51.93 -0.42 -0.24 16 36 H 0.12 0.73 7.00 -51.92 -0.36 0.37 16 37 H 0.09 0.91 6.99 -51.93 -0.36 0.54 16 38 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 39 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.39 4.93 6.50 -40.82 -0.27 4.66 16 41 H 0.11 1.43 6.40 -52.48 -0.34 1.10 16 42 H 0.11 1.43 8.06 -52.48 -0.42 1.01 16 43 H 0.11 1.58 8.06 -52.48 -0.42 1.16 16 44 H 0.13 2.79 5.64 -52.48 -0.30 2.49 16 45 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 382.93 15.07 5.77 5.77 Total: -1.00 -40.03 382.93 -8.85 -48.88 By element: Atomic # 1 Polarization: 12.06 SS G_CDS: -6.38 Total: 5.68 kcal Atomic # 6 Polarization: -16.08 SS G_CDS: -1.29 Total: -17.37 kcal Atomic # 7 Polarization: -37.27 SS G_CDS: 0.42 Total: -36.85 kcal Atomic # 8 Polarization: -30.60 SS G_CDS: -1.05 Total: -31.65 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.62 kcal Atomic # 16 Polarization: 11.21 SS G_CDS: -1.30 Total: 9.91 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -40.03 -8.85 -48.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112304057.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.895 kcal (2) G-P(sol) polarization free energy of solvation -40.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds