Wall clock time and date at job start Tue Mar 31 2020 22:03:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46866 * 2 1 4 4 C 1.52994 * 109.46656 * 240.00367 * 2 1 3 5 5 S 1.81391 * 109.47077 * 120.00166 * 2 1 3 6 6 O 1.42104 * 109.47344 * 303.60818 * 5 2 1 7 7 C 1.81396 * 103.00201 * 59.99746 * 5 2 1 8 8 C 1.53003 * 109.47068 * 179.97438 * 7 5 2 9 9 N 1.46508 * 109.47061 * 179.97438 * 8 7 5 10 10 C 1.34775 * 119.99760 * 179.97438 * 9 8 7 11 11 O 1.21590 * 119.99975 * 0.02562 * 10 9 8 12 12 C 1.47538 * 119.99618 * 180.02562 * 10 9 8 13 13 C 1.39667 * 120.19893 * 0.02562 * 12 10 9 14 14 C 1.37827 * 119.91968 * 180.02562 * 13 12 10 15 15 C 1.38567 * 120.32166 * 359.97438 * 14 13 12 16 16 C 1.38018 * 120.40580 * 0.02562 * 15 14 13 17 17 C 1.38837 * 120.07003 * 359.97438 * 16 15 14 18 18 O 1.35520 * 120.15759 * 179.97438 * 17 16 15 19 19 C 1.34815 * 117.00282 * 354.39868 * 18 17 16 20 20 H 1.07997 * 119.99797 * 5.06669 * 19 18 17 21 21 C 1.38704 * 119.99765 * 185.06035 * 19 18 17 22 22 N 1.31514 * 119.99893 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99619 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47217 * 60.00591 * 23 21 19 25 25 H 1.48497 * 109.46972 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.47353 * 300.00311 * 23 21 19 27 27 H 1.09002 * 109.46986 * 300.00120 * 1 2 3 28 28 H 1.08999 * 109.47399 * 59.99497 * 1 2 3 29 29 H 1.09000 * 109.46998 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46942 * 180.02562 * 3 2 1 31 31 H 1.08999 * 109.47513 * 299.99871 * 3 2 1 32 32 H 1.09002 * 109.47416 * 60.00143 * 3 2 1 33 33 H 1.09000 * 109.46914 * 299.99435 * 4 2 1 34 34 H 1.09001 * 109.47811 * 59.99759 * 4 2 1 35 35 H 1.09006 * 109.47048 * 179.97438 * 4 2 1 36 36 H 1.09000 * 109.47138 * 60.00366 * 7 5 2 37 37 H 1.08994 * 109.47389 * 299.99761 * 7 5 2 38 38 H 1.09003 * 109.46908 * 60.00537 * 8 7 5 39 39 H 1.08996 * 109.47761 * 300.00298 * 8 7 5 40 40 H 0.97000 * 119.99784 * 0.02562 * 9 8 7 41 41 H 1.08005 * 120.03854 * 0.02562 * 13 12 10 42 42 H 1.08006 * 119.83455 * 179.97438 * 14 13 12 43 43 H 1.08005 * 119.79495 * 179.74708 * 15 14 13 44 44 H 1.08005 * 119.96966 * 179.97438 * 16 15 14 45 45 H 0.97008 * 119.99558 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 16 2.1347 -0.8551 1.4810 6 8 1.5934 -0.2358 2.6398 7 6 1.4375 -2.5204 1.3040 8 6 1.8635 -3.3809 2.4952 9 7 1.2999 -4.7257 2.3526 10 6 1.5445 -5.6619 3.2907 11 8 2.2326 -5.3902 4.2557 12 6 0.9774 -7.0162 3.1468 13 6 0.1869 -7.3328 2.0397 14 6 -0.3405 -8.5997 1.9113 15 6 -0.0900 -9.5628 2.8755 16 6 0.6893 -9.2645 3.9749 17 6 1.2289 -7.9936 4.1209 18 8 1.9939 -7.6986 5.1999 19 6 2.0985 -8.6458 6.1535 20 1 1.6532 -9.6177 6.0003 21 6 2.7783 -8.3721 7.3311 22 7 3.3203 -7.1885 7.5177 23 14 2.9239 -9.6849 8.6521 24 1 3.6287 -10.8688 8.0979 25 1 3.6913 -9.1456 9.8034 26 1 1.5672 -10.0838 9.1053 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.6767 1.9564 0.8900 33 1 1.6766 -1.7488 -1.2492 34 1 1.6766 -0.2074 -2.1393 35 1 3.1300 -0.7208 -1.2496 36 1 1.8031 -2.9712 0.3814 37 1 0.3498 -2.4573 1.2715 38 1 1.4981 -2.9303 3.4181 39 1 2.9511 -3.4440 2.5275 40 1 0.7512 -4.9424 1.5825 41 1 -0.0109 -6.5858 1.2852 42 1 -0.9519 -8.8429 1.0548 43 1 -0.5109 -10.5517 2.7684 44 1 0.8797 -10.0204 4.7224 45 1 3.7961 -6.9973 8.3412 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000112304057.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:03:48 Heat of formation + Delta-G solvation = -108.831693 kcal Electronic energy + Delta-G solvation = -26692.304538 eV Core-core repulsion = 22801.135575 eV Total energy + Delta-G solvation = -3891.168962 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.28137 -39.83436 -38.02889 -37.15123 -36.91049 -36.26610 -34.32820 -32.79374 -30.97387 -30.55947 -28.36566 -28.07320 -27.37221 -25.22571 -23.88809 -22.91162 -21.70295 -21.58335 -19.85175 -19.29896 -18.21923 -17.81139 -17.40338 -16.77548 -16.59917 -16.30972 -16.04862 -15.80561 -15.67806 -15.62754 -15.30629 -15.25559 -14.90184 -14.77922 -14.32508 -14.19688 -13.94925 -13.54881 -13.53141 -13.19241 -13.09320 -12.98989 -12.78955 -12.71930 -12.68372 -12.50512 -12.35419 -12.32473 -12.14909 -11.92466 -11.85664 -11.45193 -11.04658 -10.82416 -10.56121 -10.15399 -9.78893 -9.20054 -9.03652 -8.44341 -6.15648 0.12182 0.43570 0.73111 1.32005 1.45244 1.50254 1.62306 2.08324 2.16124 2.34015 2.81082 2.87850 3.22425 3.47417 3.65887 3.75176 3.80622 3.94089 4.00979 4.08817 4.19687 4.29336 4.42380 4.52689 4.57488 4.62794 4.64913 4.70233 4.83115 4.87188 4.87447 4.98500 5.02416 5.06388 5.07740 5.14219 5.17561 5.27280 5.46833 5.48391 5.51756 5.61486 5.69926 5.96060 6.17475 6.68878 6.94680 7.46816 7.80624 8.76061 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.015456 B = 0.002530 C = 0.002219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1811.192040 B =11066.354790 C =12613.656958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.373 4.373 3 C -0.131 4.131 4 C -0.126 4.126 5 S 1.284 4.716 6 O -0.913 6.913 7 C -0.450 4.450 8 C 0.138 3.862 9 N -0.713 5.713 10 C 0.544 3.456 11 O -0.569 6.569 12 C -0.245 4.245 13 C -0.029 4.029 14 C -0.200 4.200 15 C -0.040 4.040 16 C -0.258 4.258 17 C 0.147 3.853 18 O -0.189 6.189 19 C -0.429 4.429 20 H 0.107 0.893 21 C -0.023 4.023 22 N -0.906 5.906 23 Si 1.023 2.977 24 H -0.251 1.251 25 H -0.274 1.274 26 H -0.256 1.256 27 H 0.028 0.972 28 H 0.077 0.923 29 H 0.066 0.934 30 H 0.091 0.909 31 H 0.080 0.920 32 H 0.031 0.969 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.096 0.904 36 H 0.174 0.826 37 H 0.096 0.904 38 H 0.025 0.975 39 H 0.079 0.921 40 H 0.415 0.585 41 H 0.163 0.837 42 H 0.165 0.835 43 H 0.154 0.846 44 H 0.123 0.877 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.855 8.108 -24.777 26.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.473 4.473 3 C -0.189 4.189 4 C -0.185 4.185 5 S 1.485 4.515 6 O -0.908 6.908 7 C -0.586 4.586 8 C 0.013 3.987 9 N -0.370 5.370 10 C 0.334 3.666 11 O -0.449 6.449 12 C -0.250 4.250 13 C -0.047 4.047 14 C -0.219 4.219 15 C -0.058 4.058 16 C -0.277 4.277 17 C 0.092 3.908 18 O -0.091 6.091 19 C -0.505 4.505 20 H 0.125 0.875 21 C -0.222 4.222 22 N -0.542 5.542 23 Si 0.841 3.159 24 H -0.175 1.175 25 H -0.199 1.199 26 H -0.180 1.180 27 H 0.047 0.953 28 H 0.096 0.904 29 H 0.085 0.915 30 H 0.110 0.890 31 H 0.099 0.901 32 H 0.051 0.949 33 H 0.095 0.905 34 H 0.090 0.910 35 H 0.115 0.885 36 H 0.191 0.809 37 H 0.115 0.885 38 H 0.044 0.956 39 H 0.098 0.902 40 H 0.253 0.747 41 H 0.180 0.820 42 H 0.183 0.817 43 H 0.172 0.828 44 H 0.141 0.859 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.539 9.031 -23.097 24.930 hybrid contribution -2.395 -0.193 1.116 2.649 sum -4.934 8.838 -21.981 24.200 Atomic orbital electron populations 1.22004 0.93916 1.02634 1.02234 1.27070 1.01462 1.05726 1.13062 1.21631 1.02980 0.92071 1.02228 1.21725 1.03439 1.00093 0.93201 1.69917 1.14511 0.84365 0.82753 1.93040 1.80550 1.73462 1.43784 1.27940 1.09957 1.16110 1.04634 1.20751 0.99396 0.81970 0.96536 1.45624 1.54873 1.10661 1.25807 1.18632 0.80126 0.85612 0.82215 1.90939 1.39948 1.81568 1.32403 1.19284 1.12156 0.92830 1.00724 1.21319 0.91831 0.98057 0.93532 1.21185 1.05827 0.92924 1.01926 1.21441 0.92754 1.00499 0.91116 1.21304 1.07139 0.96055 1.03232 1.20121 0.88887 0.93859 0.87949 1.84181 1.57280 1.41880 1.25800 1.22009 1.37744 0.94585 0.96113 0.87537 1.26784 0.95203 1.00187 1.00057 1.70323 1.33562 1.23337 1.26941 0.84619 0.79492 0.76284 0.75538 1.17526 1.19851 1.17977 0.95317 0.90389 0.91474 0.89034 0.90105 0.94934 0.90508 0.90994 0.88508 0.80872 0.88503 0.95643 0.90235 0.74675 0.81990 0.81710 0.82840 0.85924 0.92021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.21 8.29 71.98 0.60 -1.62 16 2 C -0.37 -4.25 0.94 -10.79 -0.01 -4.26 16 3 C -0.13 -1.50 8.48 71.98 0.61 -0.89 16 4 C -0.13 -0.50 8.32 71.98 0.60 0.10 16 5 S 1.28 22.28 12.09 -56.49 -0.68 21.60 16 6 O -0.91 -30.70 18.10 -148.98 -2.70 -33.39 16 7 C -0.45 -7.32 5.15 71.98 0.37 -6.95 16 8 C 0.14 4.03 5.68 86.38 0.49 4.52 16 9 N -0.71 -22.32 5.51 -466.25 -2.57 -24.88 16 10 C 0.54 25.04 7.76 86.70 0.67 25.72 16 11 O -0.57 -34.39 15.17 16.90 0.26 -34.13 16 12 C -0.25 -10.66 5.89 -19.99 -0.12 -10.78 16 13 C -0.03 -0.85 9.53 22.52 0.21 -0.64 16 14 C -0.20 -5.20 10.02 22.25 0.22 -4.97 16 15 C -0.04 -1.23 10.03 22.30 0.22 -1.01 16 16 C -0.26 -11.05 9.16 22.36 0.20 -10.84 16 17 C 0.15 7.65 6.66 22.91 0.15 7.80 16 18 O -0.19 -12.18 7.84 0.83 0.01 -12.18 16 19 C -0.43 -26.25 9.49 67.93 0.64 -25.61 16 20 H 0.11 5.82 5.21 -2.91 -0.02 5.81 16 21 C -0.02 -1.39 5.49 84.85 0.47 -0.93 16 22 N -0.91 -60.24 13.67 21.62 0.30 -59.95 16 23 Si 1.02 44.79 29.55 68.60 2.03 46.82 16 24 H -0.25 -10.12 7.11 99.48 0.71 -9.41 16 25 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 26 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 27 H 0.03 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.07 0.85 6.68 -2.39 -0.02 0.84 16 30 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.03 0.55 8.14 -2.39 -0.02 0.53 16 33 H 0.08 0.12 6.68 -2.39 -0.02 0.11 16 34 H 0.07 0.25 8.14 -2.39 -0.02 0.23 16 35 H 0.10 -0.03 8.14 -2.38 -0.02 -0.04 16 36 H 0.17 1.11 7.00 -2.39 -0.02 1.09 16 37 H 0.10 1.61 6.99 -2.39 -0.02 1.59 16 38 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 40 H 0.41 8.78 6.50 -92.71 -0.60 8.18 16 41 H 0.16 3.03 6.40 -2.91 -0.02 3.01 16 42 H 0.17 2.68 8.06 -2.91 -0.02 2.66 16 43 H 0.15 3.44 8.06 -2.91 -0.02 3.42 16 44 H 0.12 5.33 5.64 -2.91 -0.02 5.31 16 45 H 0.27 16.53 8.31 -92.70 -0.77 15.76 16 Total: -1.00 -104.49 382.93 2.39 -102.10 By element: Atomic # 1 Polarization: 23.95 SS G_CDS: 0.41 Total: 24.36 kcal Atomic # 6 Polarization: -35.69 SS G_CDS: 5.34 Total: -30.34 kcal Atomic # 7 Polarization: -82.56 SS G_CDS: -2.27 Total: -84.83 kcal Atomic # 8 Polarization: -77.27 SS G_CDS: -2.43 Total: -79.70 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Atomic # 16 Polarization: 22.28 SS G_CDS: -0.68 Total: 21.60 kcal Total: -104.49 2.39 -102.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112304057.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.732 kcal (2) G-P(sol) polarization free energy of solvation -104.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -102.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds