Wall clock time and date at job start Tue Mar 31 2020 22:03:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52997 * 109.47382 * 2 1 4 4 C 1.53006 * 109.46779 * 239.99744 * 2 1 3 5 5 S 1.81396 * 109.47160 * 120.00191 * 2 1 3 6 6 O 1.42107 * 109.47305 * 176.38770 * 5 2 1 7 7 C 1.81398 * 103.00265 * 59.99854 * 5 2 1 8 8 C 1.52994 * 109.47363 * 180.02562 * 7 5 2 9 9 N 1.46498 * 109.47414 * 179.97438 * 8 7 5 10 10 C 1.34778 * 120.00316 * 179.97438 * 9 8 7 11 11 O 1.21589 * 119.99869 * 359.97438 * 10 9 8 12 12 C 1.47538 * 120.00161 * 179.97438 * 10 9 8 13 13 C 1.39666 * 120.19639 * 0.02562 * 12 10 9 14 14 C 1.37826 * 119.92122 * 180.02562 * 13 12 10 15 15 C 1.38576 * 120.32073 * 359.97438 * 14 13 12 16 16 C 1.38020 * 120.40218 * 0.02562 * 15 14 13 17 17 C 1.38838 * 120.07595 * 359.67801 * 16 15 14 18 18 O 1.35511 * 120.16883 * 180.29761 * 17 16 15 19 19 C 1.34819 * 116.99915 * 354.39297 * 18 17 16 20 20 H 1.08005 * 119.99823 * 5.05781 * 19 18 17 21 21 C 1.38694 * 120.00246 * 185.05091 * 19 18 17 22 22 N 1.31520 * 119.99912 * 180.02562 * 21 19 18 23 23 Si 1.86799 * 120.00109 * 0.02562 * 21 19 18 24 24 H 1.48505 * 109.46947 * 89.99811 * 23 21 19 25 25 H 1.48500 * 109.47505 * 209.99795 * 23 21 19 26 26 H 1.48505 * 109.46975 * 330.00279 * 23 21 19 27 27 H 1.09002 * 109.47228 * 300.00062 * 1 2 3 28 28 H 1.09004 * 109.47551 * 59.99925 * 1 2 3 29 29 H 1.09000 * 109.47504 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47396 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.47060 * 300.00052 * 3 2 1 32 32 H 1.08998 * 109.47205 * 60.00262 * 3 2 1 33 33 H 1.08993 * 109.47232 * 299.99790 * 4 2 1 34 34 H 1.09001 * 109.47073 * 60.00309 * 4 2 1 35 35 H 1.09009 * 109.46743 * 179.97438 * 4 2 1 36 36 H 1.09001 * 109.47124 * 300.00123 * 7 5 2 37 37 H 1.08996 * 109.47567 * 59.99883 * 7 5 2 38 38 H 1.09001 * 109.47280 * 299.99695 * 8 7 5 39 39 H 1.08996 * 109.47610 * 59.99566 * 8 7 5 40 40 H 0.96997 * 120.00040 * 359.97438 * 9 8 7 41 41 H 1.07999 * 120.04312 * 359.97438 * 13 12 10 42 42 H 1.07992 * 119.84340 * 179.97438 * 14 13 12 43 43 H 1.07998 * 119.80050 * 180.02562 * 15 14 13 44 44 H 1.08006 * 119.96658 * 179.97438 * 16 15 14 45 45 H 0.97009 * 120.00034 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7214 -1.2493 5 16 2.1346 -0.8552 1.4811 6 8 3.5532 -0.9287 1.4397 7 6 1.4374 -2.5204 1.3040 8 6 1.8623 -3.3806 2.4958 9 7 1.2988 -4.7253 2.3532 10 6 1.5426 -5.6613 3.2918 11 8 2.2307 -5.3897 4.2568 12 6 0.9746 -7.0153 3.1484 13 6 0.1841 -7.3319 2.0414 14 6 -0.3441 -8.5985 1.9134 15 6 -0.0945 -9.5613 2.8782 16 6 0.6848 -9.2630 3.9775 17 6 1.2303 -7.9942 4.1200 18 8 2.0007 -7.7010 5.1956 19 6 2.1049 -8.6474 6.1500 20 1 1.6547 -9.6176 5.9999 21 6 2.7905 -8.3753 7.3246 22 7 2.8926 -9.2988 8.2554 23 14 3.5688 -6.6972 7.5845 24 1 2.5891 -5.7933 8.2391 25 1 4.7683 -6.8363 8.4488 26 1 3.9675 -6.1279 6.2721 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 3.1300 1.4424 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6766 -1.7490 -1.2492 34 1 1.6765 -0.2075 -2.1393 35 1 3.1300 -0.7209 -1.2495 36 1 0.3497 -2.4574 1.2714 37 1 1.8030 -2.9713 0.3815 38 1 2.9500 -3.4438 2.5289 39 1 1.4965 -2.9297 3.4182 40 1 0.7502 -4.9421 1.5832 41 1 -0.0138 -6.5849 1.2869 42 1 -0.9555 -8.8417 1.0571 43 1 -0.5123 -10.5513 2.7693 44 1 0.8745 -10.0187 4.7255 45 1 3.3718 -9.1084 9.0771 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000112304058.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:03:52 Heat of formation + Delta-G solvation = -78.539848 kcal Electronic energy + Delta-G solvation = -26816.381540 eV Core-core repulsion = 22926.526131 eV Total energy + Delta-G solvation = -3889.855409 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -39.79449 -38.32075 -36.66092 -36.53872 -35.99122 -34.96575 -32.45350 -31.48670 -29.80720 -29.21114 -27.81724 -27.69801 -25.34385 -24.01142 -22.64958 -21.32803 -21.04690 -20.20464 -17.95092 -17.91071 -17.41434 -16.53513 -16.39606 -15.75864 -15.52124 -15.05197 -14.80614 -14.69578 -14.35181 -14.31662 -14.22670 -13.96446 -13.72459 -13.55062 -13.12143 -12.83819 -12.77677 -12.67568 -12.36553 -12.26409 -12.22127 -12.18960 -12.12519 -11.61805 -11.48114 -11.40346 -11.32952 -11.27681 -10.84732 -10.71033 -10.24565 -10.03839 -9.62084 -9.08026 -8.88846 -8.78788 -8.48622 -8.39577 -7.49042 -6.47064 -4.12255 1.11580 1.55984 2.17314 2.24123 3.33366 3.39068 3.40865 3.55831 3.67396 3.68548 4.23831 4.30654 4.36810 4.50185 4.53107 4.65836 4.69539 4.72923 5.08428 5.09112 5.11668 5.21928 5.25719 5.29868 5.33389 5.35315 5.37081 5.42995 5.60938 5.62992 5.65690 5.71583 5.75632 5.80166 5.97331 6.02410 6.36049 6.53307 6.71252 6.81248 6.99369 7.13403 7.46878 7.66918 7.91693 7.94838 8.83677 8.89054 9.51286 10.57882 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.013906 B = 0.002828 C = 0.002406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2013.060172 B = 9899.319132 C =11636.736061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.389 4.389 3 C -0.125 4.125 4 C -0.144 4.144 5 S 1.261 4.739 6 O -0.835 6.835 7 C -0.465 4.465 8 C 0.144 3.856 9 N -0.738 5.738 10 C 0.559 3.441 11 O -0.516 6.516 12 C -0.227 4.227 13 C -0.041 4.041 14 C -0.222 4.222 15 C -0.051 4.051 16 C -0.226 4.226 17 C 0.201 3.799 18 O -0.165 6.165 19 C -0.397 4.397 20 H 0.108 0.892 21 C 0.072 3.928 22 N -0.869 5.869 23 Si 0.900 3.100 24 H -0.273 1.273 25 H -0.286 1.286 26 H -0.238 1.238 27 H 0.072 0.928 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.058 0.942 34 H 0.062 0.938 35 H 0.060 0.940 36 H 0.125 0.875 37 H 0.094 0.906 38 H 0.068 0.932 39 H 0.076 0.924 40 H 0.395 0.605 41 H 0.113 0.887 42 H 0.112 0.888 43 H 0.114 0.886 44 H 0.139 0.861 45 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.573 17.891 -17.257 26.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.486 4.486 3 C -0.183 4.183 4 C -0.202 4.202 5 S 1.458 4.542 6 O -0.830 6.830 7 C -0.602 4.602 8 C 0.019 3.981 9 N -0.395 5.395 10 C 0.349 3.651 11 O -0.392 6.392 12 C -0.231 4.231 13 C -0.060 4.060 14 C -0.241 4.241 15 C -0.069 4.069 16 C -0.245 4.245 17 C 0.143 3.857 18 O -0.064 6.064 19 C -0.472 4.472 20 H 0.126 0.874 21 C -0.134 4.134 22 N -0.505 5.505 23 Si 0.725 3.275 24 H -0.198 1.198 25 H -0.212 1.212 26 H -0.161 1.161 27 H 0.091 0.909 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.087 0.913 33 H 0.077 0.923 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.143 0.857 37 H 0.113 0.887 38 H 0.086 0.914 39 H 0.094 0.906 40 H 0.229 0.771 41 H 0.131 0.869 42 H 0.130 0.870 43 H 0.132 0.868 44 H 0.156 0.844 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -8.200 18.593 -15.498 25.556 hybrid contribution 0.630 -0.776 -2.230 2.444 sum -7.570 17.817 -17.727 26.249 Atomic orbital electron populations 1.21596 0.90596 1.02672 1.03274 1.27190 1.03453 1.05025 1.12965 1.21532 1.01325 0.92405 1.03030 1.21931 1.01472 0.99798 0.97020 1.70823 0.91805 0.90199 1.01417 1.93141 1.25893 1.83220 1.80747 1.28041 1.10387 1.17577 1.04167 1.20681 0.99130 0.82462 0.95791 1.45887 1.55671 1.11274 1.26649 1.18233 0.80342 0.84370 0.82133 1.90864 1.37504 1.80636 1.30174 1.18838 1.11221 0.93276 0.99807 1.20745 0.94365 0.96237 0.94630 1.20530 1.07709 0.94281 1.01569 1.20964 0.94944 0.98247 0.92777 1.21291 1.04537 0.97455 1.01266 1.19023 0.87884 0.91587 0.87211 1.83781 1.55318 1.41912 1.25437 1.20930 1.36683 0.94526 0.95026 0.87434 1.24499 0.95766 0.99480 0.93631 1.69641 1.39749 1.33918 1.07162 0.86202 0.78608 0.82326 0.80410 1.19817 1.21219 1.16123 0.90924 0.91873 0.91909 0.92172 0.91588 0.91325 0.92319 0.91859 0.92119 0.85704 0.88699 0.91368 0.90598 0.77051 0.86942 0.87038 0.86823 0.84391 0.90803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.45 8.32 37.15 0.31 -0.15 16 2 C -0.39 -2.38 0.94 -90.62 -0.08 -2.47 16 3 C -0.12 -0.74 8.48 37.16 0.32 -0.42 16 4 C -0.14 -1.09 8.29 37.16 0.31 -0.78 16 5 S 1.26 10.04 12.09 -107.50 -1.30 8.74 16 6 O -0.83 -12.29 18.10 -35.23 -0.64 -12.92 16 7 C -0.47 -3.79 5.15 37.15 0.19 -3.60 16 8 C 0.14 1.87 5.68 -4.05 -0.02 1.84 16 9 N -0.74 -10.78 5.51 -61.35 -0.34 -11.11 16 10 C 0.56 11.38 7.76 -12.47 -0.10 11.29 16 11 O -0.52 -12.98 15.17 -16.57 -0.25 -13.23 16 12 C -0.23 -4.59 5.89 -104.81 -0.62 -5.21 16 13 C -0.04 -0.65 9.53 -39.20 -0.37 -1.02 16 14 C -0.22 -3.40 10.03 -39.61 -0.40 -3.80 16 15 C -0.05 -0.86 10.03 -39.54 -0.40 -1.26 16 16 C -0.23 -4.77 9.16 -39.44 -0.36 -5.14 16 17 C 0.20 4.76 6.66 -38.60 -0.26 4.50 16 18 O -0.16 -4.55 6.67 -21.04 -0.14 -4.69 16 19 C -0.40 -11.39 9.95 30.90 0.31 -11.08 16 20 H 0.11 3.07 5.44 -52.48 -0.29 2.78 16 21 C 0.07 2.08 5.49 -17.52 -0.10 1.98 16 22 N -0.87 -25.35 13.96 55.48 0.77 -24.57 16 23 Si 0.90 23.38 28.62 -169.99 -4.86 18.52 16 24 H -0.27 -7.00 7.11 56.52 0.40 -6.60 16 25 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 26 H -0.24 -6.58 7.11 56.52 0.40 -6.18 16 27 H 0.07 0.14 8.14 -51.93 -0.42 -0.29 16 28 H 0.06 0.24 8.14 -51.93 -0.42 -0.19 16 29 H 0.06 0.19 6.68 -51.93 -0.35 -0.16 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.06 0.41 6.68 -51.93 -0.35 0.06 16 34 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.06 0.58 8.14 -51.92 -0.42 0.16 16 36 H 0.12 0.60 7.00 -51.92 -0.36 0.24 16 37 H 0.09 0.81 6.99 -51.93 -0.36 0.45 16 38 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 39 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.39 4.39 6.50 -40.82 -0.27 4.12 16 41 H 0.11 1.31 6.40 -52.49 -0.34 0.97 16 42 H 0.11 1.35 8.06 -52.49 -0.42 0.93 16 43 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 44 H 0.14 3.02 5.64 -52.48 -0.30 2.72 16 45 H 0.28 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 381.81 15.07 5.75 5.75 Total: -1.00 -38.40 381.81 -8.66 -47.07 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: -6.39 Total: 1.75 kcal Atomic # 6 Polarization: -14.03 SS G_CDS: -1.27 Total: -15.30 kcal Atomic # 7 Polarization: -36.12 SS G_CDS: 0.44 Total: -35.68 kcal Atomic # 8 Polarization: -29.82 SS G_CDS: -1.03 Total: -30.84 kcal Atomic # 14 Polarization: 23.38 SS G_CDS: -4.86 Total: 18.52 kcal Atomic # 16 Polarization: 10.04 SS G_CDS: -1.30 Total: 8.74 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -38.40 -8.66 -47.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112304058.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.474 kcal (2) G-P(sol) polarization free energy of solvation -38.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds