Wall clock time and date at job start Tue Mar 31 2020 22:03:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52997 * 109.47382 * 2 1 4 4 C 1.53006 * 109.46779 * 239.99744 * 2 1 3 5 5 S 1.81396 * 109.47160 * 120.00191 * 2 1 3 6 6 O 1.42107 * 109.47305 * 176.38770 * 5 2 1 7 7 C 1.81398 * 103.00265 * 59.99854 * 5 2 1 8 8 C 1.52994 * 109.47363 * 180.02562 * 7 5 2 9 9 N 1.46498 * 109.47414 * 179.97438 * 8 7 5 10 10 C 1.34778 * 120.00316 * 179.97438 * 9 8 7 11 11 O 1.21589 * 119.99869 * 359.97438 * 10 9 8 12 12 C 1.47538 * 120.00161 * 179.97438 * 10 9 8 13 13 C 1.39666 * 120.19639 * 0.02562 * 12 10 9 14 14 C 1.37826 * 119.92122 * 180.02562 * 13 12 10 15 15 C 1.38576 * 120.32073 * 359.97438 * 14 13 12 16 16 C 1.38020 * 120.40218 * 0.02562 * 15 14 13 17 17 C 1.38838 * 120.07595 * 359.67801 * 16 15 14 18 18 O 1.35511 * 120.16883 * 180.29761 * 17 16 15 19 19 C 1.34819 * 116.99915 * 354.39297 * 18 17 16 20 20 H 1.08005 * 119.99823 * 5.05781 * 19 18 17 21 21 C 1.38694 * 120.00246 * 185.05091 * 19 18 17 22 22 N 1.31520 * 119.99912 * 180.02562 * 21 19 18 23 23 Si 1.86799 * 120.00109 * 0.02562 * 21 19 18 24 24 H 1.48505 * 109.46947 * 89.99811 * 23 21 19 25 25 H 1.48500 * 109.47505 * 209.99795 * 23 21 19 26 26 H 1.48505 * 109.46975 * 330.00279 * 23 21 19 27 27 H 1.09002 * 109.47228 * 300.00062 * 1 2 3 28 28 H 1.09004 * 109.47551 * 59.99925 * 1 2 3 29 29 H 1.09000 * 109.47504 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47396 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.47060 * 300.00052 * 3 2 1 32 32 H 1.08998 * 109.47205 * 60.00262 * 3 2 1 33 33 H 1.08993 * 109.47232 * 299.99790 * 4 2 1 34 34 H 1.09001 * 109.47073 * 60.00309 * 4 2 1 35 35 H 1.09009 * 109.46743 * 179.97438 * 4 2 1 36 36 H 1.09001 * 109.47124 * 300.00123 * 7 5 2 37 37 H 1.08996 * 109.47567 * 59.99883 * 7 5 2 38 38 H 1.09001 * 109.47280 * 299.99695 * 8 7 5 39 39 H 1.08996 * 109.47610 * 59.99566 * 8 7 5 40 40 H 0.96997 * 120.00040 * 359.97438 * 9 8 7 41 41 H 1.07999 * 120.04312 * 359.97438 * 13 12 10 42 42 H 1.07992 * 119.84340 * 179.97438 * 14 13 12 43 43 H 1.07998 * 119.80050 * 180.02562 * 15 14 13 44 44 H 1.08006 * 119.96658 * 179.97438 * 16 15 14 45 45 H 0.97009 * 120.00034 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7214 -1.2493 5 16 2.1346 -0.8552 1.4811 6 8 3.5532 -0.9287 1.4397 7 6 1.4374 -2.5204 1.3040 8 6 1.8623 -3.3806 2.4958 9 7 1.2988 -4.7253 2.3532 10 6 1.5426 -5.6613 3.2918 11 8 2.2307 -5.3897 4.2568 12 6 0.9746 -7.0153 3.1484 13 6 0.1841 -7.3319 2.0414 14 6 -0.3441 -8.5985 1.9134 15 6 -0.0945 -9.5613 2.8782 16 6 0.6848 -9.2630 3.9775 17 6 1.2303 -7.9942 4.1200 18 8 2.0007 -7.7010 5.1956 19 6 2.1049 -8.6474 6.1500 20 1 1.6547 -9.6176 5.9999 21 6 2.7905 -8.3753 7.3246 22 7 2.8926 -9.2988 8.2554 23 14 3.5688 -6.6972 7.5845 24 1 2.5891 -5.7933 8.2391 25 1 4.7683 -6.8363 8.4488 26 1 3.9675 -6.1279 6.2721 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 3.1300 1.4424 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6766 -1.7490 -1.2492 34 1 1.6765 -0.2075 -2.1393 35 1 3.1300 -0.7209 -1.2495 36 1 0.3497 -2.4574 1.2714 37 1 1.8030 -2.9713 0.3815 38 1 2.9500 -3.4438 2.5289 39 1 1.4965 -2.9297 3.4182 40 1 0.7502 -4.9421 1.5832 41 1 -0.0138 -6.5849 1.2869 42 1 -0.9555 -8.8417 1.0571 43 1 -0.5123 -10.5513 2.7693 44 1 0.8745 -10.0187 4.7255 45 1 3.3718 -9.1084 9.0771 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000112304058.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:03:52 Heat of formation + Delta-G solvation = -107.449725 kcal Electronic energy + Delta-G solvation = -26817.635166 eV Core-core repulsion = 22926.526131 eV Total energy + Delta-G solvation = -3891.109035 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.40443 -39.95269 -38.16270 -37.15342 -36.90927 -36.30448 -34.52217 -32.84404 -31.01142 -30.79595 -28.37086 -28.07877 -27.29877 -25.27157 -23.93057 -22.80537 -21.71341 -21.69873 -19.81822 -19.50037 -18.26603 -17.93149 -17.45489 -16.80806 -16.73285 -16.30184 -16.05733 -15.87793 -15.71945 -15.52941 -15.44463 -15.30752 -14.97090 -14.78688 -14.40862 -14.21000 -14.03073 -13.95928 -13.53749 -13.19932 -13.14158 -13.08481 -12.84915 -12.78962 -12.71967 -12.58478 -12.38322 -12.32654 -12.03835 -11.92669 -11.85822 -11.54846 -11.08007 -10.97002 -10.63621 -10.19846 -9.83518 -9.20193 -9.14943 -8.58477 -6.27108 0.04856 0.43589 0.64899 1.24634 1.29421 1.58049 1.62053 2.00915 2.28703 2.30071 2.75477 2.80697 3.02610 3.16182 3.65495 3.74895 3.80426 3.92317 3.96555 4.02731 4.19081 4.26043 4.42594 4.48622 4.56901 4.58668 4.63891 4.70563 4.79797 4.82616 4.87103 4.88848 5.02292 5.05807 5.07415 5.17395 5.26837 5.28707 5.42216 5.47426 5.51539 5.61969 5.69519 5.83690 6.15759 6.62827 6.78864 7.37468 7.58808 8.51995 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.013906 B = 0.002828 C = 0.002406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2013.060172 B = 9899.319132 C =11636.736061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.373 4.373 3 C -0.131 4.131 4 C -0.150 4.150 5 S 1.285 4.715 6 O -0.912 6.912 7 C -0.452 4.452 8 C 0.136 3.864 9 N -0.710 5.710 10 C 0.551 3.449 11 O -0.574 6.574 12 C -0.234 4.234 13 C -0.029 4.029 14 C -0.189 4.189 15 C -0.042 4.042 16 C -0.251 4.251 17 C 0.160 3.840 18 O -0.210 6.210 19 C -0.403 4.403 20 H 0.093 0.907 21 C 0.027 3.973 22 N -0.911 5.911 23 Si 0.954 3.046 24 H -0.271 1.271 25 H -0.266 1.266 26 H -0.271 1.271 27 H 0.096 0.904 28 H 0.070 0.930 29 H 0.077 0.923 30 H 0.032 0.968 31 H 0.079 0.921 32 H 0.091 0.909 33 H 0.067 0.933 34 H 0.076 0.924 35 H 0.028 0.972 36 H 0.174 0.826 37 H 0.097 0.903 38 H 0.030 0.970 39 H 0.083 0.917 40 H 0.416 0.584 41 H 0.169 0.831 42 H 0.168 0.832 43 H 0.151 0.849 44 H 0.114 0.886 45 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.781 19.295 -21.622 32.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.473 4.473 3 C -0.190 4.190 4 C -0.208 4.208 5 S 1.485 4.515 6 O -0.908 6.908 7 C -0.588 4.588 8 C 0.011 3.989 9 N -0.366 5.366 10 C 0.341 3.659 11 O -0.454 6.454 12 C -0.238 4.238 13 C -0.047 4.047 14 C -0.207 4.207 15 C -0.060 4.060 16 C -0.270 4.270 17 C 0.106 3.894 18 O -0.114 6.114 19 C -0.479 4.479 20 H 0.110 0.890 21 C -0.174 4.174 22 N -0.551 5.551 23 Si 0.778 3.222 24 H -0.196 1.196 25 H -0.191 1.191 26 H -0.196 1.196 27 H 0.115 0.885 28 H 0.088 0.912 29 H 0.096 0.904 30 H 0.051 0.949 31 H 0.098 0.902 32 H 0.110 0.890 33 H 0.086 0.914 34 H 0.095 0.905 35 H 0.047 0.953 36 H 0.191 0.809 37 H 0.115 0.885 38 H 0.048 0.952 39 H 0.101 0.899 40 H 0.255 0.745 41 H 0.186 0.814 42 H 0.186 0.814 43 H 0.169 0.831 44 H 0.132 0.868 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -12.446 20.005 -19.936 30.863 hybrid contribution 1.619 -1.163 -1.431 2.454 sum -10.826 18.842 -21.367 30.476 Atomic orbital electron populations 1.21724 0.87598 1.04232 1.04919 1.27069 1.05555 1.04303 1.10403 1.21632 0.99730 0.92720 1.04876 1.22005 0.99564 1.00853 0.98373 1.69937 0.89280 0.89734 1.02527 1.93041 1.29971 1.84528 1.83255 1.27948 1.13217 1.15960 1.01721 1.20800 0.97065 0.82308 0.98683 1.45627 1.54462 1.10870 1.25688 1.18482 0.79789 0.85335 0.82316 1.90851 1.40097 1.81618 1.32875 1.19281 1.11490 0.92743 1.00315 1.21368 0.91767 0.98048 0.93551 1.21246 1.05106 0.92832 1.01509 1.21454 0.92823 1.00639 0.91124 1.21334 1.06476 0.96289 1.02945 1.19806 0.88642 0.93694 0.87223 1.83772 1.58932 1.41806 1.26910 1.20901 1.36564 0.94512 0.95904 0.88996 1.25025 0.96809 1.01685 0.93846 1.69682 1.42360 1.35027 1.08003 0.85438 0.78584 0.79529 0.78654 1.19586 1.19123 1.19556 0.88518 0.91153 0.90413 0.94916 0.90245 0.89045 0.91365 0.90548 0.95289 0.80882 0.88451 0.95186 0.89857 0.74488 0.81407 0.81437 0.83144 0.86770 0.90433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.29 8.32 71.98 0.60 0.31 16 2 C -0.37 -3.56 0.94 -10.79 -0.01 -3.57 16 3 C -0.13 -1.31 8.48 71.98 0.61 -0.70 16 4 C -0.15 -1.95 8.29 71.98 0.60 -1.35 16 5 S 1.28 18.86 12.09 -56.49 -0.68 18.18 16 6 O -0.91 -28.12 18.10 -148.98 -2.70 -30.82 16 7 C -0.45 -5.87 5.15 71.98 0.37 -5.50 16 8 C 0.14 3.36 5.68 86.38 0.49 3.85 16 9 N -0.71 -18.87 5.51 -466.28 -2.57 -21.43 16 10 C 0.55 22.22 7.76 86.70 0.67 22.89 16 11 O -0.57 -30.22 15.17 16.90 0.26 -29.96 16 12 C -0.23 -9.13 5.89 -19.99 -0.12 -9.24 16 13 C -0.03 -0.75 9.53 22.52 0.21 -0.54 16 14 C -0.19 -4.48 10.03 22.25 0.22 -4.26 16 15 C -0.04 -1.27 10.03 22.30 0.22 -1.05 16 16 C -0.25 -10.69 9.16 22.36 0.20 -10.49 16 17 C 0.16 7.77 6.66 22.91 0.15 7.92 16 18 O -0.21 -12.40 6.67 0.90 0.01 -12.40 16 19 C -0.40 -24.88 9.95 67.93 0.68 -24.20 16 20 H 0.09 5.72 5.44 -2.91 -0.02 5.71 16 21 C 0.03 1.64 5.49 84.85 0.47 2.11 16 22 N -0.91 -56.26 13.96 21.62 0.30 -55.96 16 23 Si 0.95 51.71 28.62 68.60 1.96 53.67 16 24 H -0.27 -14.26 7.11 99.48 0.71 -13.55 16 25 H -0.27 -13.26 7.11 99.48 0.71 -12.55 16 26 H -0.27 -15.98 7.11 99.48 0.71 -15.27 16 27 H 0.10 -0.18 8.14 -2.39 -0.02 -0.20 16 28 H 0.07 0.16 8.14 -2.38 -0.02 0.14 16 29 H 0.08 -0.02 6.68 -2.39 -0.02 -0.04 16 30 H 0.03 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 33 H 0.07 0.73 6.68 -2.39 -0.02 0.72 16 34 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.03 0.55 8.14 -2.38 -0.02 0.53 16 36 H 0.17 0.58 7.00 -2.39 -0.02 0.57 16 37 H 0.10 1.31 6.99 -2.39 -0.02 1.30 16 38 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 40 H 0.42 7.02 6.50 -92.71 -0.60 6.41 16 41 H 0.17 2.48 6.40 -2.91 -0.02 2.47 16 42 H 0.17 2.38 8.06 -2.91 -0.02 2.35 16 43 H 0.15 3.44 8.06 -2.91 -0.02 3.42 16 44 H 0.11 5.34 5.64 -2.91 -0.02 5.32 16 45 H 0.29 16.26 8.31 -92.70 -0.77 15.49 16 Total: -1.00 -96.88 381.81 2.36 -94.52 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: 0.41 Total: 8.02 kcal Atomic # 6 Polarization: -29.19 SS G_CDS: 5.37 Total: -23.82 kcal Atomic # 7 Polarization: -75.12 SS G_CDS: -2.27 Total: -77.39 kcal Atomic # 8 Polarization: -70.74 SS G_CDS: -2.43 Total: -73.17 kcal Atomic # 14 Polarization: 51.71 SS G_CDS: 1.96 Total: 53.67 kcal Atomic # 16 Polarization: 18.86 SS G_CDS: -0.68 Total: 18.18 kcal Total: -96.88 2.36 -94.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112304058.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.932 kcal (2) G-P(sol) polarization free energy of solvation -96.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds