Wall clock time and date at job start Tue Mar 31 2020 22:21:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.46766 * 2 1 4 4 N 1.46498 * 109.47009 * 184.74248 * 3 2 1 5 5 C 1.36874 * 120.00141 * 91.31922 * 4 3 2 6 6 H 1.08004 * 119.99279 * 315.01340 * 5 4 3 7 7 C 1.39044 * 120.00469 * 135.01629 * 5 4 3 8 8 N 1.31366 * 120.00097 * 158.20266 * 7 5 4 9 9 Si 1.86799 * 119.99831 * 338.20565 * 7 5 4 10 10 H 1.48507 * 109.47239 * 94.48778 * 9 7 5 11 11 H 1.48498 * 109.47151 * 214.48712 * 9 7 5 12 12 H 1.48496 * 109.47302 * 334.48865 * 9 7 5 13 13 C 1.34782 * 120.00278 * 271.31467 * 4 3 2 14 14 O 1.21590 * 120.00190 * 184.17264 * 13 4 3 15 15 C 1.47727 * 119.99556 * 4.17657 * 13 4 3 16 16 C 1.39674 * 120.15052 * 301.95210 * 15 13 4 17 17 C 1.37909 * 119.84520 * 179.97438 * 16 15 13 18 18 S 1.76195 * 119.92462 * 180.02562 * 17 16 15 19 19 C 1.81399 * 104.45432 * 94.89800 * 18 17 16 20 20 O 1.42105 * 104.27859 * 210.96966 * 18 17 16 21 21 O 1.42103 * 104.27565 * 338.82445 * 18 17 16 22 22 C 1.38401 * 120.15335 * 359.74436 * 17 16 15 23 23 C 1.38357 * 120.30132 * 0.51769 * 22 17 16 24 24 C 1.37955 * 120.15245 * 359.48135 * 23 22 17 25 25 C 1.50706 * 120.07578 * 180.23341 * 24 23 22 26 26 C 1.52998 * 109.47121 * 268.78317 * 25 24 23 27 27 H 1.09002 * 109.47080 * 184.83836 * 1 2 3 28 28 H 1.08998 * 109.47574 * 304.83673 * 1 2 3 29 29 H 1.08999 * 109.47460 * 64.83844 * 1 2 3 30 30 H 1.08995 * 109.47057 * 240.00388 * 2 1 3 31 31 H 1.09002 * 109.47135 * 119.99890 * 2 1 3 32 32 H 1.09005 * 109.46956 * 64.74860 * 3 2 1 33 33 H 1.09000 * 109.47593 * 304.74615 * 3 2 1 34 34 H 0.96995 * 120.00022 * 180.02562 * 8 7 5 35 35 H 1.07996 * 120.07447 * 359.96401 * 16 15 13 36 36 H 1.09003 * 109.46833 * 60.00028 * 19 18 17 37 37 H 1.09000 * 109.47386 * 179.97438 * 19 18 17 38 38 H 1.08999 * 109.47025 * 300.00627 * 19 18 17 39 39 H 1.07999 * 119.85023 * 180.25149 * 22 17 16 40 40 H 1.08009 * 119.92235 * 179.76319 * 23 22 17 41 41 H 1.08998 * 109.47054 * 28.78532 * 25 24 23 42 42 H 1.08999 * 109.46939 * 148.78434 * 25 24 23 43 43 H 1.08999 * 109.47069 * 179.97438 * 26 25 24 44 44 H 1.08998 * 109.47332 * 300.00044 * 26 25 24 45 45 H 1.08999 * 109.47119 * 60.00226 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5004 1.4442 -0.1142 5 6 4.0904 1.5049 -1.3478 6 1 3.7243 0.8845 -2.1525 7 6 5.1610 2.3651 -1.5649 8 7 5.9915 2.1425 -2.5581 9 14 5.4184 3.8372 -0.4442 10 1 6.3719 3.4766 0.6357 11 1 5.9684 4.9692 -1.2325 12 1 4.1197 4.2362 0.1551 13 6 4.2633 1.3860 0.9954 14 8 5.4734 1.4638 0.9061 15 6 3.6291 1.2276 2.3202 16 6 2.6931 2.1635 2.7663 17 6 2.1045 2.0092 4.0039 18 16 0.9231 3.1882 4.5685 19 6 -0.6814 2.4751 4.1130 20 8 1.0826 3.1957 5.9806 21 8 1.1902 4.3499 3.7949 22 6 2.4354 0.9273 4.8011 23 6 3.3657 -0.0006 4.3676 24 6 3.9621 0.1415 3.1319 25 6 4.9713 -0.8731 2.6592 26 6 6.3751 -0.4271 3.0731 27 1 -0.3633 -1.0240 0.0867 28 1 -0.3634 0.5870 0.8434 29 1 -0.3634 0.4369 -0.9301 30 1 1.8933 -0.5137 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.7476 1.9312 0.9295 33 1 1.6088 1.9804 -0.8444 34 1 6.7385 2.7424 -2.7094 35 1 2.4311 3.0061 2.1436 36 1 -0.8028 1.5099 4.6048 37 1 -1.4802 3.1463 4.4288 38 1 -0.7255 2.3403 3.0323 39 1 1.9684 0.8091 5.7677 40 1 3.6221 -0.8405 4.9964 41 1 4.7506 -1.8415 3.1082 42 1 4.9219 -0.9562 1.5735 43 1 7.1050 -1.1611 2.7317 44 1 6.5959 0.5413 2.6242 45 1 6.4246 -0.3440 4.1588 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000123326813.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:45 Heat of formation + Delta-G solvation = -95.658388 kcal Electronic energy + Delta-G solvation = -29261.559208 eV Core-core repulsion = 25370.961484 eV Total energy + Delta-G solvation = -3890.597725 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.64498 -39.52951 -38.14227 -37.18457 -36.97584 -35.20550 -34.79687 -33.32543 -32.31460 -30.87489 -30.16117 -27.76837 -26.68020 -25.28610 -24.35969 -22.62756 -22.45659 -21.52043 -20.04003 -19.31791 -18.36063 -17.64751 -17.27516 -17.19914 -17.10920 -16.61888 -16.36585 -15.94973 -15.50493 -15.30581 -15.12520 -14.82279 -14.67801 -14.39610 -14.27659 -14.08744 -13.95262 -13.87842 -13.63068 -13.41034 -13.17170 -13.14220 -13.08212 -12.94530 -12.77514 -12.68059 -12.39786 -12.31844 -12.20000 -12.05137 -11.91540 -11.83754 -11.63673 -11.52193 -10.83498 -10.48864 -10.15041 -10.00772 -9.56978 -8.51617 -6.23436 -0.85828 -0.27943 0.02756 1.14050 1.26553 1.39477 1.83334 1.88104 2.27953 2.39443 2.60699 3.01851 3.03526 3.19702 3.58168 3.66498 3.76100 3.96183 4.05789 4.15510 4.17474 4.24242 4.30655 4.39140 4.44083 4.45958 4.51382 4.63568 4.70968 4.75936 4.76666 4.86958 4.93953 5.00547 5.05178 5.07857 5.11578 5.21185 5.30184 5.36370 5.47433 5.49129 5.65594 5.74003 5.84028 6.69254 6.84416 7.25636 7.81182 8.58007 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011163 B = 0.005221 C = 0.004896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2507.749043 B = 5361.205238 C = 5717.139089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.129 4.129 3 C 0.084 3.916 4 N -0.467 5.467 5 C -0.344 4.344 6 H 0.073 0.927 7 C 0.061 3.939 8 N -0.898 5.898 9 Si 0.936 3.064 10 H -0.281 1.281 11 H -0.294 1.294 12 H -0.267 1.267 13 C 0.488 3.512 14 O -0.574 6.574 15 C -0.142 4.142 16 C -0.022 4.022 17 C -0.664 4.664 18 S 2.495 3.505 19 C -0.618 4.618 20 O -0.966 6.966 21 O -0.987 6.987 22 C -0.008 4.008 23 C -0.128 4.128 24 C -0.003 4.003 25 C -0.087 4.087 26 C -0.143 4.143 27 H 0.069 0.931 28 H 0.076 0.924 29 H 0.057 0.943 30 H 0.042 0.958 31 H 0.057 0.943 32 H 0.085 0.915 33 H 0.078 0.922 34 H 0.274 0.726 35 H 0.130 0.870 36 H 0.167 0.833 37 H 0.159 0.841 38 H 0.152 0.848 39 H 0.181 0.819 40 H 0.175 0.825 41 H 0.111 0.889 42 H 0.043 0.957 43 H 0.063 0.937 44 H 0.034 0.966 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.810 -6.456 17.305 25.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.168 4.168 3 C -0.038 4.038 4 N -0.188 5.188 5 C -0.471 4.471 6 H 0.091 0.909 7 C -0.145 4.145 8 N -0.535 5.535 9 Si 0.765 3.235 10 H -0.208 1.208 11 H -0.222 1.222 12 H -0.191 1.191 13 C 0.279 3.721 14 O -0.459 6.459 15 C -0.146 4.146 16 C -0.042 4.042 17 C -0.749 4.749 18 S 2.678 3.322 19 C -0.773 4.773 20 O -0.963 6.963 21 O -0.984 6.984 22 C -0.026 4.026 23 C -0.146 4.146 24 C -0.004 4.004 25 C -0.125 4.125 26 C -0.200 4.200 27 H 0.088 0.912 28 H 0.095 0.905 29 H 0.076 0.924 30 H 0.061 0.939 31 H 0.076 0.924 32 H 0.103 0.897 33 H 0.097 0.903 34 H 0.083 0.917 35 H 0.148 0.852 36 H 0.185 0.815 37 H 0.177 0.823 38 H 0.170 0.830 39 H 0.198 0.802 40 H 0.192 0.808 41 H 0.130 0.870 42 H 0.062 0.938 43 H 0.082 0.918 44 H 0.053 0.947 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -16.845 -5.588 17.508 24.930 hybrid contribution 1.155 0.302 -1.068 1.601 sum -15.691 -5.286 16.440 23.333 Atomic orbital electron populations 1.21695 0.92366 1.02944 1.02884 1.21799 0.98126 0.95613 1.01264 1.22220 0.80092 0.98597 1.02918 1.43730 1.05941 1.64793 1.04307 1.18632 1.16227 1.23816 0.88455 0.90939 1.25775 0.94326 0.98873 0.95550 1.69812 1.13462 1.37335 1.32886 0.85970 0.79182 0.78673 0.79686 1.20751 1.22180 1.19137 1.18917 0.87055 0.80743 0.85388 1.90610 1.15484 1.53376 1.86384 1.20074 1.00269 0.98792 0.95430 1.20954 0.92390 0.96222 0.94591 1.30634 1.22394 1.18042 1.03823 1.05258 0.78770 0.74371 0.73801 1.30017 1.16332 1.15961 1.14942 1.93539 1.86649 1.86643 1.29490 1.93554 1.85272 1.47158 1.72406 1.21435 0.93584 0.89307 0.98273 1.21474 0.97068 1.01600 0.94456 1.20418 0.93496 0.92793 0.93664 1.20641 0.93626 0.97648 1.00543 1.21695 0.95284 1.01475 1.01537 0.91236 0.90546 0.92383 0.93872 0.92431 0.89715 0.90313 0.91683 0.85227 0.81486 0.82302 0.82999 0.80190 0.80755 0.87028 0.93828 0.91793 0.94684 0.90822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.72 9.91 71.98 0.71 -2.01 16 2 C -0.13 -3.82 6.24 30.59 0.19 -3.63 16 3 C 0.08 3.02 5.12 86.38 0.44 3.47 16 4 N -0.47 -22.64 2.09 -638.93 -1.34 -23.97 16 5 C -0.34 -19.86 9.63 84.10 0.81 -19.05 16 6 H 0.07 4.40 8.06 -2.91 -0.02 4.38 16 7 C 0.06 3.70 4.77 84.96 0.41 4.11 16 8 N -0.90 -56.94 13.95 21.68 0.30 -56.64 16 9 Si 0.94 52.20 25.14 68.60 1.72 53.92 16 10 H -0.28 -16.75 6.37 99.48 0.63 -16.11 16 11 H -0.29 -15.71 7.11 99.48 0.71 -15.00 16 12 H -0.27 -14.18 7.11 99.48 0.71 -13.47 16 13 C 0.49 23.81 4.39 86.75 0.38 24.19 16 14 O -0.57 -32.85 10.23 -4.00 -0.04 -32.89 16 15 C -0.14 -5.34 4.76 -20.09 -0.10 -5.44 16 16 C -0.02 -0.72 7.12 22.54 0.16 -0.56 16 17 C -0.66 -15.59 5.65 22.23 0.13 -15.47 16 18 S 2.49 47.48 5.79 -56.49 -0.33 47.16 16 19 C -0.62 -3.47 10.80 113.37 1.22 -2.24 16 20 O -0.97 -22.48 17.27 -127.65 -2.20 -24.69 16 21 O -0.99 -28.78 16.99 -127.65 -2.17 -30.95 16 22 C -0.01 -0.14 9.47 22.34 0.21 0.07 16 23 C -0.13 -2.64 9.68 22.23 0.22 -2.42 16 24 C 0.00 -0.08 5.17 -19.60 -0.10 -0.18 16 25 C -0.09 -2.68 5.40 29.85 0.16 -2.52 16 26 C -0.14 -4.61 9.76 71.98 0.70 -3.90 16 27 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.06 1.67 7.90 -2.39 -0.02 1.65 16 32 H 0.08 2.63 4.23 -2.38 -0.01 2.62 16 33 H 0.08 2.80 8.03 -2.39 -0.02 2.78 16 34 H 0.27 16.44 8.31 -92.71 -0.77 15.67 16 35 H 0.13 4.49 6.45 -2.91 -0.02 4.48 16 36 H 0.17 -0.03 8.14 -2.39 -0.02 -0.05 16 37 H 0.16 0.24 8.14 -2.39 -0.02 0.22 16 38 H 0.15 0.55 8.14 -2.39 -0.02 0.53 16 39 H 0.18 1.91 7.70 -2.91 -0.02 1.89 16 40 H 0.18 2.17 8.06 -2.91 -0.02 2.15 16 41 H 0.11 2.41 8.08 -2.39 -0.02 2.39 16 42 H 0.04 1.69 7.02 -2.39 -0.02 1.67 16 43 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 44 H 0.03 1.46 6.28 -2.39 -0.01 1.44 16 45 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 Total: -1.00 -90.32 373.29 2.41 -87.91 By element: Atomic # 1 Polarization: 4.82 SS G_CDS: 0.92 Total: 5.73 kcal Atomic # 6 Polarization: -31.14 SS G_CDS: 5.55 Total: -25.59 kcal Atomic # 7 Polarization: -79.58 SS G_CDS: -1.03 Total: -80.61 kcal Atomic # 8 Polarization: -84.11 SS G_CDS: -4.41 Total: -88.52 kcal Atomic # 14 Polarization: 52.20 SS G_CDS: 1.72 Total: 53.92 kcal Atomic # 16 Polarization: 47.48 SS G_CDS: -0.33 Total: 47.16 kcal Total: -90.32 2.41 -87.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123326813.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.745 kcal (2) G-P(sol) polarization free energy of solvation -90.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds