Wall clock time and date at job start Tue Mar 31 2020 22:14:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.46997 * 2 1 4 4 H 1.09001 * 109.47502 * 55.00061 * 3 2 1 5 5 C 1.50706 * 109.47238 * 174.99896 * 3 2 1 6 6 H 1.07995 * 120.00167 * 119.72028 * 5 3 2 7 7 C 1.37879 * 119.99394 * 299.99727 * 5 3 2 8 8 N 1.31514 * 120.00338 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 119.99424 * 180.02562 * 7 5 3 10 10 H 1.48492 * 109.47487 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47233 * 120.00158 * 9 7 5 12 12 H 1.48508 * 109.46883 * 239.99963 * 9 7 5 13 13 N 1.46500 * 109.47007 * 294.99685 * 3 2 1 14 14 C 1.34773 * 120.00050 * 85.00124 * 13 3 2 15 15 O 1.21272 * 120.00064 * 0.02562 * 14 13 3 16 16 C 1.50699 * 119.99932 * 179.97438 * 14 13 3 17 17 C 1.50704 * 109.47045 * 180.02562 * 16 14 13 18 18 C 1.38258 * 119.99525 * 269.72266 * 17 16 14 19 19 C 1.38219 * 119.99749 * 179.80953 * 18 17 16 20 20 C 1.38260 * 119.99557 * 0.42459 * 19 18 17 21 21 C 1.38211 * 120.00112 * 359.81016 * 20 19 18 22 22 S 1.76204 * 119.99750 * 179.97438 * 21 20 19 23 23 O 1.42095 * 104.28053 * 26.09193 * 22 21 20 24 24 O 1.42106 * 104.27703 * 153.95250 * 22 21 20 25 25 C 1.81397 * 104.44866 * 270.01982 * 22 21 20 26 26 C 1.53000 * 109.47400 * 179.97438 * 25 22 21 27 27 C 1.38212 * 119.99946 * 90.00325 * 17 16 14 28 28 H 1.08993 * 109.47331 * 300.00296 * 1 2 3 29 29 H 1.09001 * 109.46791 * 60.00740 * 1 2 3 30 30 H 1.08996 * 109.46972 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47331 * 239.99704 * 2 1 3 32 32 H 1.09002 * 109.46801 * 119.99817 * 2 1 3 33 33 H 0.96996 * 119.99730 * 179.97438 * 8 7 5 34 34 H 0.97002 * 120.00030 * 265.00025 * 13 3 2 35 35 H 1.08999 * 109.47446 * 299.99957 * 16 14 13 36 36 H 1.08996 * 109.47464 * 59.99678 * 16 14 13 37 37 H 1.07992 * 120.00160 * 0.02562 * 18 17 16 38 38 H 1.07989 * 120.00266 * 180.21174 * 19 18 17 39 39 H 1.07999 * 119.99630 * 179.79437 * 20 19 18 40 40 H 1.09000 * 109.47585 * 300.00251 * 25 22 21 41 41 H 1.09000 * 109.46920 * 60.00180 * 25 22 21 42 42 H 1.09000 * 109.46862 * 60.00237 * 26 25 22 43 43 H 1.08995 * 109.47694 * 180.02562 * 26 25 22 44 44 H 1.09000 * 109.47032 * 300.00682 * 26 25 22 45 45 H 1.07996 * 120.00369 * 359.97364 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4444 0.1239 6 1 4.1474 1.8849 -0.6544 7 6 4.1432 0.8785 1.2281 8 7 3.4061 0.3367 2.1730 9 14 6.0048 0.8814 1.3820 10 1 6.5987 1.5463 0.1945 11 1 6.3988 1.6169 2.6104 12 1 6.4970 -0.5174 1.4632 13 7 1.6524 2.0974 -1.2518 14 6 0.4352 2.6643 -1.3671 15 8 -0.3392 2.6326 -0.4343 16 6 0.0368 3.3385 -2.6546 17 6 -1.3608 3.8869 -2.5230 18 6 -2.4459 3.1048 -2.8728 19 6 -3.7279 3.6063 -2.7483 20 6 -3.9245 4.8931 -2.2824 21 6 -2.8394 5.6765 -1.9373 22 16 -3.0901 7.3166 -1.3442 23 8 -4.3917 7.2884 -0.7749 24 8 -1.9457 7.5784 -0.5434 25 6 -3.0708 8.3460 -2.8377 26 6 -3.2819 9.8110 -2.4503 27 6 -1.5573 5.1735 -2.0581 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.8292 -0.0617 2.9496 34 1 2.2720 2.1231 -1.9978 35 1 0.7282 4.1540 -2.8668 36 1 0.0682 2.6145 -3.4688 37 1 -2.2921 2.1009 -3.2399 38 1 -4.5757 2.9943 -3.0183 39 1 -4.9261 5.2861 -2.1883 40 1 -2.1101 8.2378 -3.3412 41 1 -3.8699 8.0290 -3.5077 42 1 -2.4830 10.1282 -1.7800 43 1 -3.2707 10.4295 -3.3477 44 1 -4.2426 9.9189 -1.9469 45 1 -0.7094 5.7858 -1.7888 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000123988199.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:17 Heat of formation + Delta-G solvation = -92.578285 kcal Electronic energy + Delta-G solvation = -27211.560491 eV Core-core repulsion = 23321.096329 eV Total energy + Delta-G solvation = -3890.464161 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -39.83157 -38.54250 -37.22581 -36.06028 -35.10417 -33.53856 -32.94999 -32.32431 -31.36227 -30.89558 -27.99385 -26.53039 -24.60638 -23.18746 -23.10631 -22.11505 -20.31969 -19.33106 -18.94245 -17.79936 -17.07047 -16.62473 -16.38205 -16.00960 -15.75744 -15.51049 -15.25070 -14.64669 -14.45438 -14.32611 -14.11501 -13.69871 -13.28273 -13.23331 -12.88531 -12.69866 -12.65743 -12.49950 -12.29837 -12.19326 -12.09381 -11.95714 -11.73726 -11.41527 -11.27964 -11.22430 -10.98604 -10.95287 -10.83586 -10.58895 -10.31364 -10.18282 -9.63917 -9.41887 -9.18874 -9.02833 -8.75317 -8.49876 -7.82140 -6.12224 -4.21724 -0.14522 0.77609 1.21382 2.71513 3.23520 3.28911 3.31847 3.33938 3.38975 3.75241 3.88407 4.17886 4.24057 4.36779 4.43340 4.63646 4.72893 4.78675 4.90043 5.12764 5.15232 5.18877 5.22263 5.26685 5.37751 5.50652 5.51066 5.56188 5.75595 5.87600 5.94753 6.16563 6.37633 6.38721 6.44175 6.65034 6.75380 7.02086 7.19893 7.36618 7.45782 7.61815 7.73165 7.90493 8.18236 8.66534 8.78211 9.14099 9.45838 10.93151 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.016820 B = 0.002648 C = 0.002453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1664.265723 B =10569.749244 C =11413.400311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.127 4.127 3 C 0.270 3.730 4 H 0.049 0.951 5 C -0.533 4.533 6 H 0.061 0.939 7 C 0.066 3.934 8 N -0.882 5.882 9 Si 0.901 3.099 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.709 5.709 14 C 0.499 3.501 15 O -0.539 6.539 16 C -0.111 4.111 17 C -0.071 4.071 18 C -0.050 4.050 19 C -0.138 4.138 20 C -0.032 4.032 21 C -0.658 4.658 22 S 2.495 3.505 23 O -0.938 6.938 24 O -0.931 6.931 25 C -0.610 4.610 26 C -0.150 4.150 27 C -0.011 4.011 28 H 0.049 0.951 29 H 0.037 0.963 30 H 0.021 0.979 31 H 0.030 0.970 32 H 0.099 0.901 33 H 0.264 0.736 34 H 0.388 0.612 35 H 0.100 0.900 36 H 0.099 0.901 37 H 0.129 0.871 38 H 0.131 0.869 39 H 0.138 0.862 40 H 0.136 0.864 41 H 0.134 0.866 42 H 0.074 0.926 43 H 0.083 0.917 44 H 0.073 0.927 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.131 12.664 -16.295 24.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.168 3.832 4 H 0.067 0.933 5 C -0.572 4.572 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.519 5.519 9 Si 0.728 3.272 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.357 5.357 14 C 0.284 3.716 15 O -0.417 6.417 16 C -0.151 4.151 17 C -0.072 4.072 18 C -0.068 4.068 19 C -0.157 4.157 20 C -0.051 4.051 21 C -0.745 4.745 22 S 2.675 3.325 23 O -0.936 6.936 24 O -0.928 6.928 25 C -0.739 4.739 26 C -0.208 4.208 27 C -0.030 4.030 28 H 0.068 0.932 29 H 0.056 0.944 30 H 0.041 0.959 31 H 0.049 0.951 32 H 0.117 0.883 33 H 0.074 0.926 34 H 0.220 0.780 35 H 0.118 0.882 36 H 0.117 0.883 37 H 0.147 0.853 38 H 0.149 0.851 39 H 0.156 0.844 40 H 0.154 0.846 41 H 0.153 0.847 42 H 0.093 0.907 43 H 0.102 0.898 44 H 0.092 0.908 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -13.758 12.774 -14.559 23.758 hybrid contribution 1.476 -0.673 -1.065 1.941 sum -12.282 12.102 -15.623 23.268 Atomic orbital electron populations 1.21831 0.98394 0.97928 1.01211 1.21931 0.92554 0.99880 1.02226 1.18789 0.94206 0.89128 0.81071 0.93289 1.21264 0.90707 1.39054 1.06170 0.92057 1.24897 0.98614 0.94823 0.95415 1.69904 1.35046 1.37598 1.09362 0.86405 0.84880 0.77729 0.78137 1.19758 1.20864 1.20918 1.46491 1.14526 1.56110 1.18580 1.20160 0.82997 0.79712 0.88775 1.90713 1.51326 1.59379 1.40311 1.20812 0.94003 1.01777 0.98534 1.19483 0.94754 0.93916 0.99066 1.21342 0.92295 0.98747 0.94445 1.21210 0.97248 0.95882 1.01386 1.20856 0.97515 0.94093 0.92586 1.30375 0.99996 1.24207 1.19955 1.05497 0.74840 0.75104 0.77027 1.93561 1.39524 1.86164 1.74304 1.93605 1.50830 1.84396 1.64007 1.30223 1.11940 1.10412 1.21372 1.21560 1.03505 0.91929 1.03854 1.20774 0.95260 0.95597 0.91350 0.93152 0.94383 0.95943 0.95111 0.88315 0.92609 0.77999 0.88153 0.88275 0.85343 0.85126 0.84426 0.84601 0.84744 0.90670 0.89828 0.90800 0.84284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.04 8.52 37.16 0.32 -2.72 16 2 C -0.13 -3.07 5.45 -26.73 -0.15 -3.22 16 3 C 0.27 6.73 2.24 -69.08 -0.15 6.57 16 4 H 0.05 1.44 7.58 -51.93 -0.39 1.05 16 5 C -0.53 -13.97 8.73 -34.44 -0.30 -14.28 16 6 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 7 C 0.07 1.76 5.29 -17.82 -0.09 1.67 16 8 N -0.88 -24.81 11.29 55.43 0.63 -24.18 16 9 Si 0.90 20.59 29.54 -169.99 -5.02 15.57 16 10 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 11 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 12 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 13 N -0.71 -14.13 5.02 -54.93 -0.28 -14.41 16 14 C 0.50 9.42 6.39 -10.99 -0.07 9.35 16 15 O -0.54 -12.46 13.17 5.56 0.07 -12.38 16 16 C -0.11 -1.44 5.83 -29.03 -0.17 -1.61 16 17 C -0.07 -0.96 4.37 -104.62 -0.46 -1.41 16 18 C -0.05 -0.61 9.70 -39.58 -0.38 -0.99 16 19 C -0.14 -1.52 10.05 -39.58 -0.40 -1.92 16 20 C -0.03 -0.35 9.47 -39.58 -0.37 -0.73 16 21 C -0.66 -8.01 5.66 -39.59 -0.22 -8.23 16 22 S 2.50 27.17 5.16 -107.50 -0.55 26.61 16 23 O -0.94 -12.59 17.13 -57.54 -0.99 -13.58 16 24 O -0.93 -13.71 17.13 -57.54 -0.99 -14.69 16 25 C -0.61 -3.61 6.70 37.16 0.25 -3.36 16 26 C -0.15 -0.84 9.92 37.16 0.37 -0.48 16 27 C -0.01 -0.15 9.13 -39.59 -0.36 -0.51 16 28 H 0.05 1.22 7.85 -51.93 -0.41 0.81 16 29 H 0.04 0.81 5.65 -51.93 -0.29 0.51 16 30 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.10 2.66 5.95 -51.93 -0.31 2.35 16 33 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 34 H 0.39 6.55 8.54 -40.82 -0.35 6.21 16 35 H 0.10 1.07 8.08 -51.93 -0.42 0.65 16 36 H 0.10 1.01 8.08 -51.93 -0.42 0.59 16 37 H 0.13 1.34 8.06 -52.49 -0.42 0.91 16 38 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 39 H 0.14 1.23 7.57 -52.49 -0.40 0.84 16 40 H 0.14 0.58 8.14 -51.92 -0.42 0.15 16 41 H 0.13 0.50 8.14 -51.92 -0.42 0.08 16 42 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 44 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.14 1.76 7.57 -52.49 -0.40 1.36 16 LS Contribution 383.22 15.07 5.78 5.78 Total: -1.00 -36.55 383.22 -10.28 -46.83 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: -6.73 Total: 6.32 kcal Atomic # 6 Polarization: -19.66 SS G_CDS: -2.20 Total: -21.86 kcal Atomic # 7 Polarization: -38.94 SS G_CDS: 0.35 Total: -38.59 kcal Atomic # 8 Polarization: -38.76 SS G_CDS: -1.90 Total: -40.65 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Atomic # 16 Polarization: 27.17 SS G_CDS: -0.55 Total: 26.61 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -36.55 -10.28 -46.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123988199.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.750 kcal (2) G-P(sol) polarization free energy of solvation -36.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds