Wall clock time and date at job start Tue Mar 31 2020 22:14:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.46997 * 2 1 4 4 H 1.09001 * 109.47502 * 55.00061 * 3 2 1 5 5 C 1.50706 * 109.47238 * 174.99896 * 3 2 1 6 6 H 1.07995 * 120.00167 * 119.72028 * 5 3 2 7 7 C 1.37879 * 119.99394 * 299.99727 * 5 3 2 8 8 N 1.31514 * 120.00338 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 119.99424 * 180.02562 * 7 5 3 10 10 H 1.48492 * 109.47487 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47233 * 120.00158 * 9 7 5 12 12 H 1.48508 * 109.46883 * 239.99963 * 9 7 5 13 13 N 1.46500 * 109.47007 * 294.99685 * 3 2 1 14 14 C 1.34773 * 120.00050 * 85.00124 * 13 3 2 15 15 O 1.21272 * 120.00064 * 0.02562 * 14 13 3 16 16 C 1.50699 * 119.99932 * 179.97438 * 14 13 3 17 17 C 1.50704 * 109.47045 * 180.02562 * 16 14 13 18 18 C 1.38258 * 119.99525 * 269.72266 * 17 16 14 19 19 C 1.38219 * 119.99749 * 179.80953 * 18 17 16 20 20 C 1.38260 * 119.99557 * 0.42459 * 19 18 17 21 21 C 1.38211 * 120.00112 * 359.81016 * 20 19 18 22 22 S 1.76204 * 119.99750 * 179.97438 * 21 20 19 23 23 O 1.42095 * 104.28053 * 26.09193 * 22 21 20 24 24 O 1.42106 * 104.27703 * 153.95250 * 22 21 20 25 25 C 1.81397 * 104.44866 * 270.01982 * 22 21 20 26 26 C 1.53000 * 109.47400 * 179.97438 * 25 22 21 27 27 C 1.38212 * 119.99946 * 90.00325 * 17 16 14 28 28 H 1.08993 * 109.47331 * 300.00296 * 1 2 3 29 29 H 1.09001 * 109.46791 * 60.00740 * 1 2 3 30 30 H 1.08996 * 109.46972 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47331 * 239.99704 * 2 1 3 32 32 H 1.09002 * 109.46801 * 119.99817 * 2 1 3 33 33 H 0.96996 * 119.99730 * 179.97438 * 8 7 5 34 34 H 0.97002 * 120.00030 * 265.00025 * 13 3 2 35 35 H 1.08999 * 109.47446 * 299.99957 * 16 14 13 36 36 H 1.08996 * 109.47464 * 59.99678 * 16 14 13 37 37 H 1.07992 * 120.00160 * 0.02562 * 18 17 16 38 38 H 1.07989 * 120.00266 * 180.21174 * 19 18 17 39 39 H 1.07999 * 119.99630 * 179.79437 * 20 19 18 40 40 H 1.09000 * 109.47585 * 300.00251 * 25 22 21 41 41 H 1.09000 * 109.46920 * 60.00180 * 25 22 21 42 42 H 1.09000 * 109.46862 * 60.00237 * 26 25 22 43 43 H 1.08995 * 109.47694 * 180.02562 * 26 25 22 44 44 H 1.09000 * 109.47032 * 300.00682 * 26 25 22 45 45 H 1.07996 * 120.00369 * 359.97364 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4444 0.1239 6 1 4.1474 1.8849 -0.6544 7 6 4.1432 0.8785 1.2281 8 7 3.4061 0.3367 2.1730 9 14 6.0048 0.8814 1.3820 10 1 6.5987 1.5463 0.1945 11 1 6.3988 1.6169 2.6104 12 1 6.4970 -0.5174 1.4632 13 7 1.6524 2.0974 -1.2518 14 6 0.4352 2.6643 -1.3671 15 8 -0.3392 2.6326 -0.4343 16 6 0.0368 3.3385 -2.6546 17 6 -1.3608 3.8869 -2.5230 18 6 -2.4459 3.1048 -2.8728 19 6 -3.7279 3.6063 -2.7483 20 6 -3.9245 4.8931 -2.2824 21 6 -2.8394 5.6765 -1.9373 22 16 -3.0901 7.3166 -1.3442 23 8 -4.3917 7.2884 -0.7749 24 8 -1.9457 7.5784 -0.5434 25 6 -3.0708 8.3460 -2.8377 26 6 -3.2819 9.8110 -2.4503 27 6 -1.5573 5.1735 -2.0581 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.8292 -0.0617 2.9496 34 1 2.2720 2.1231 -1.9978 35 1 0.7282 4.1540 -2.8668 36 1 0.0682 2.6145 -3.4688 37 1 -2.2921 2.1009 -3.2399 38 1 -4.5757 2.9943 -3.0183 39 1 -4.9261 5.2861 -2.1883 40 1 -2.1101 8.2378 -3.3412 41 1 -3.8699 8.0290 -3.5077 42 1 -2.4830 10.1282 -1.7800 43 1 -3.2707 10.4295 -3.3477 44 1 -4.2426 9.9189 -1.9469 45 1 -0.7094 5.7858 -1.7888 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000123988199.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:16 Heat of formation + Delta-G solvation = -119.034051 kcal Electronic energy + Delta-G solvation = -27212.707699 eV Core-core repulsion = 23321.096329 eV Total energy + Delta-G solvation = -3891.611370 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.04932 -39.82942 -38.17744 -37.01860 -36.92218 -34.32206 -34.03396 -33.96440 -32.67760 -32.22506 -29.46839 -28.11830 -25.19348 -25.01422 -23.97159 -23.24814 -21.91210 -21.06528 -19.83594 -19.01964 -18.49090 -17.47572 -17.42094 -17.25048 -17.09613 -16.85892 -16.51880 -16.05438 -15.81878 -15.24897 -15.11781 -14.78239 -14.63238 -14.26046 -14.11312 -14.00561 -13.69246 -13.51779 -13.36842 -13.22556 -13.19311 -13.17769 -13.06646 -12.90150 -12.79763 -12.67136 -12.37817 -12.21708 -12.14888 -12.02845 -11.79820 -11.59003 -11.34249 -11.03859 -10.72475 -10.52904 -10.25424 -9.80756 -9.59398 -8.16291 -6.33673 -0.91900 -0.13191 0.28757 1.43156 1.44571 1.56181 1.89117 1.91365 2.31134 2.42446 2.83476 3.01733 3.13066 3.14030 3.61289 3.73384 3.83581 3.95707 4.06066 4.18190 4.30239 4.31441 4.41707 4.48179 4.49074 4.56783 4.60894 4.75051 4.76054 4.84986 4.85434 4.97118 5.06212 5.07000 5.14472 5.25706 5.29254 5.43906 5.46116 5.56768 5.65258 5.80368 5.88360 5.95455 6.18073 6.76093 7.04341 7.34493 7.65815 8.89216 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.016820 B = 0.002648 C = 0.002453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1664.265723 B =10569.749244 C =11413.400311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.120 4.120 3 C 0.277 3.723 4 H -0.008 1.008 5 C -0.545 4.545 6 H 0.073 0.927 7 C 0.012 3.988 8 N -0.917 5.917 9 Si 0.970 3.030 10 H -0.258 1.258 11 H -0.287 1.287 12 H -0.279 1.279 13 N -0.706 5.706 14 C 0.494 3.506 15 O -0.587 6.587 16 C -0.097 4.097 17 C -0.091 4.091 18 C -0.061 4.061 19 C -0.140 4.140 20 C -0.040 4.040 21 C -0.665 4.665 22 S 2.486 3.514 23 O -0.974 6.974 24 O -0.984 6.984 25 C -0.572 4.572 26 C -0.165 4.165 27 C -0.035 4.035 28 H 0.018 0.982 29 H 0.048 0.952 30 H 0.044 0.956 31 H 0.044 0.956 32 H 0.068 0.932 33 H 0.264 0.736 34 H 0.405 0.595 35 H 0.126 0.874 36 H 0.136 0.864 37 H 0.146 0.854 38 H 0.160 0.840 39 H 0.158 0.842 40 H 0.161 0.839 41 H 0.168 0.832 42 H 0.069 0.931 43 H 0.112 0.888 44 H 0.075 0.925 45 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.195 13.311 -19.880 27.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.159 4.159 3 C 0.174 3.826 4 H 0.010 0.990 5 C -0.583 4.583 6 H 0.092 0.908 7 C -0.188 4.188 8 N -0.556 5.556 9 Si 0.795 3.205 10 H -0.182 1.182 11 H -0.213 1.213 12 H -0.204 1.204 13 N -0.356 5.356 14 C 0.281 3.719 15 O -0.468 6.468 16 C -0.137 4.137 17 C -0.093 4.093 18 C -0.079 4.079 19 C -0.158 4.158 20 C -0.058 4.058 21 C -0.752 4.752 22 S 2.671 3.329 23 O -0.971 6.971 24 O -0.981 6.981 25 C -0.706 4.706 26 C -0.224 4.224 27 C -0.053 4.053 28 H 0.038 0.962 29 H 0.067 0.933 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.086 0.914 33 H 0.073 0.927 34 H 0.241 0.759 35 H 0.144 0.856 36 H 0.154 0.846 37 H 0.164 0.836 38 H 0.178 0.822 39 H 0.175 0.825 40 H 0.179 0.821 41 H 0.186 0.814 42 H 0.088 0.912 43 H 0.131 0.869 44 H 0.094 0.906 45 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -13.813 13.397 -18.154 26.455 hybrid contribution 1.394 -0.776 0.013 1.595 sum -12.419 12.621 -18.141 25.350 Atomic orbital electron populations 1.21661 0.97031 0.98986 1.00208 1.21766 0.93676 0.99188 1.01260 1.18325 0.93556 0.89149 0.81601 0.99034 1.21636 0.91491 1.38699 1.06511 0.90842 1.25805 1.03356 0.94482 0.95115 1.70068 1.37017 1.38536 1.09949 0.85324 0.79151 0.77799 0.78210 1.18185 1.21294 1.20446 1.46246 1.15682 1.56193 1.17463 1.21191 0.81716 0.78626 0.90320 1.90698 1.52548 1.60884 1.42661 1.20793 0.94397 1.02857 0.95604 1.19645 0.95348 0.94193 1.00082 1.21655 0.92470 0.99410 0.94370 1.21614 0.97889 0.95990 1.00353 1.21233 0.98201 0.94347 0.92047 1.30504 0.99897 1.25117 1.19640 1.05631 0.73185 0.75252 0.78796 1.93505 1.40305 1.86613 1.76711 1.93537 1.52160 1.84933 1.67464 1.29962 1.14809 1.08672 1.17189 1.21788 1.03603 0.91731 1.05247 1.20917 0.95871 0.96173 0.92388 0.96227 0.93266 0.93680 0.93747 0.91372 0.92716 0.75941 0.85576 0.84606 0.83632 0.82205 0.82458 0.82104 0.81440 0.91152 0.86893 0.90609 0.84696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.50 8.52 71.98 0.61 -4.89 16 2 C -0.12 -5.91 5.45 30.59 0.17 -5.74 16 3 C 0.28 14.23 2.24 44.25 0.10 14.33 16 4 H -0.01 -0.51 7.58 -2.39 -0.02 -0.53 16 5 C -0.55 -28.79 8.73 25.60 0.22 -28.57 16 6 H 0.07 3.60 7.74 -2.91 -0.02 3.58 16 7 C 0.01 0.66 5.29 84.66 0.45 1.11 16 8 N -0.92 -53.34 11.29 21.45 0.24 -53.10 16 9 Si 0.97 42.35 29.54 68.60 2.03 44.38 16 10 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 11 H -0.29 -12.62 7.11 99.48 0.71 -11.92 16 12 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 13 N -0.71 -27.97 5.02 -446.10 -2.24 -30.21 16 14 C 0.49 18.55 6.39 87.66 0.56 19.11 16 15 O -0.59 -27.98 13.17 -3.01 -0.04 -28.02 16 16 C -0.10 -2.32 5.83 29.10 0.17 -2.15 16 17 C -0.09 -2.36 4.37 -19.86 -0.09 -2.45 16 18 C -0.06 -1.37 9.70 22.27 0.22 -1.16 16 19 C -0.14 -2.78 10.05 22.27 0.22 -2.56 16 20 C -0.04 -0.84 9.47 22.27 0.21 -0.63 16 21 C -0.67 -15.93 5.66 22.27 0.13 -15.81 16 22 S 2.49 54.17 5.16 -56.49 -0.29 53.88 16 23 O -0.97 -26.56 17.13 -127.65 -2.19 -28.74 16 24 O -0.98 -30.52 17.13 -127.65 -2.19 -32.70 16 25 C -0.57 -5.11 6.70 71.98 0.48 -4.62 16 26 C -0.17 -1.42 9.92 71.98 0.71 -0.71 16 27 C -0.03 -0.93 9.13 22.27 0.20 -0.72 16 28 H 0.02 0.96 7.85 -2.39 -0.02 0.94 16 29 H 0.05 2.08 5.65 -2.39 -0.01 2.07 16 30 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.04 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.07 3.80 5.95 -2.39 -0.01 3.79 16 33 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 34 H 0.41 13.07 8.54 -92.71 -0.79 12.28 16 35 H 0.13 2.37 8.08 -2.39 -0.02 2.35 16 36 H 0.14 2.25 8.08 -2.39 -0.02 2.23 16 37 H 0.15 2.65 8.06 -2.91 -0.02 2.62 16 38 H 0.16 2.12 8.06 -2.92 -0.02 2.10 16 39 H 0.16 2.57 7.57 -2.91 -0.02 2.54 16 40 H 0.16 0.77 8.14 -2.39 -0.02 0.75 16 41 H 0.17 0.51 8.14 -2.39 -0.02 0.49 16 42 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 43 H 0.11 0.42 8.14 -2.39 -0.02 0.40 16 44 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 45 H 0.14 3.54 7.57 -2.91 -0.02 3.52 16 Total: -1.00 -84.86 383.22 -0.10 -84.96 By element: Atomic # 1 Polarization: 24.81 SS G_CDS: 0.21 Total: 25.02 kcal Atomic # 6 Polarization: -39.83 SS G_CDS: 4.37 Total: -35.46 kcal Atomic # 7 Polarization: -81.32 SS G_CDS: -2.00 Total: -83.31 kcal Atomic # 8 Polarization: -85.05 SS G_CDS: -4.41 Total: -89.46 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 2.03 Total: 44.38 kcal Atomic # 16 Polarization: 54.17 SS G_CDS: -0.29 Total: 53.88 kcal Total: -84.86 -0.10 -84.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123988199.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.074 kcal (2) G-P(sol) polarization free energy of solvation -84.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds