Wall clock time and date at job start Tue Mar 31 2020 22:14:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47051 * 2 1 4 4 H 1.09002 * 109.47136 * 305.00183 * 3 2 1 5 5 C 1.50699 * 109.46996 * 185.00061 * 3 2 1 6 6 H 1.07995 * 119.99933 * 239.99865 * 5 3 2 7 7 C 1.37879 * 119.99937 * 60.00221 * 5 3 2 8 8 N 1.31512 * 120.00100 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 119.99893 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47074 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47451 * 119.99861 * 9 7 5 12 12 H 1.48504 * 109.46944 * 239.99532 * 9 7 5 13 13 N 1.46500 * 109.47135 * 65.00207 * 3 2 1 14 14 C 1.34780 * 120.00034 * 274.99579 * 13 3 2 15 15 O 1.21287 * 119.99910 * 0.02562 * 14 13 3 16 16 C 1.50690 * 120.00021 * 180.02562 * 14 13 3 17 17 C 1.50702 * 109.47286 * 180.02562 * 16 14 13 18 18 C 1.38256 * 119.99963 * 269.72888 * 17 16 14 19 19 C 1.38218 * 120.00086 * 180.34241 * 18 17 16 20 20 C 1.38254 * 119.99721 * 359.90888 * 19 18 17 21 21 C 1.38212 * 120.00284 * 0.04312 * 20 19 18 22 22 S 1.76199 * 120.00066 * 180.02562 * 21 20 19 23 23 O 1.42102 * 104.27670 * 26.09364 * 22 21 20 24 24 O 1.42097 * 104.27807 * 153.94894 * 22 21 20 25 25 C 1.81394 * 104.44826 * 270.02266 * 22 21 20 26 26 C 1.53001 * 109.47033 * 179.97438 * 25 22 21 27 27 C 1.38215 * 120.00248 * 89.99938 * 17 16 14 28 28 H 1.08998 * 109.47376 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47289 * 299.99901 * 1 2 3 30 30 H 1.09000 * 109.47150 * 59.99850 * 1 2 3 31 31 H 1.09000 * 109.46606 * 240.00175 * 2 1 3 32 32 H 1.09000 * 109.47150 * 120.00149 * 2 1 3 33 33 H 0.96997 * 120.00077 * 180.02562 * 8 7 5 34 34 H 0.97001 * 120.00211 * 94.99827 * 13 3 2 35 35 H 1.09003 * 109.47121 * 60.00523 * 16 14 13 36 36 H 1.09006 * 109.47664 * 300.00162 * 16 14 13 37 37 H 1.08001 * 120.00211 * 0.27430 * 18 17 16 38 38 H 1.07997 * 119.99809 * 179.97438 * 19 18 17 39 39 H 1.07999 * 119.99740 * 180.02562 * 20 19 18 40 40 H 1.09000 * 109.47263 * 299.99507 * 25 22 21 41 41 H 1.08998 * 109.47523 * 59.99846 * 25 22 21 42 42 H 1.09001 * 109.46962 * 60.00410 * 26 25 22 43 43 H 1.09005 * 109.47389 * 179.97438 * 26 25 22 44 44 H 1.08996 * 109.47435 * 300.00243 * 26 25 22 45 45 H 1.08000 * 119.99286 * 359.70252 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1471 1.8888 0.6522 7 6 4.1432 0.8784 -1.2280 8 7 3.4062 0.3366 -2.1729 9 14 6.0049 0.8800 -1.3812 10 1 6.5987 1.5451 -0.1937 11 1 6.4962 -0.5190 -1.4628 12 1 6.3999 1.6156 -2.6093 13 7 1.6525 2.0975 1.2518 14 6 0.4352 2.6644 1.3670 15 8 -0.3396 2.6320 0.4344 16 6 0.0368 3.3386 2.6544 17 6 -1.3612 3.8860 2.5232 18 6 -1.5586 5.1748 2.0632 19 6 -2.8404 5.6793 1.9496 20 6 -3.9252 4.8944 2.2941 21 6 -3.7279 3.6058 2.7530 22 16 -5.1105 2.6054 3.1915 23 8 -6.1801 3.1255 2.4138 24 8 -4.6515 1.2732 3.0078 25 6 -5.3778 2.9494 4.9523 26 6 -6.5675 2.1304 5.4571 27 6 -2.4457 3.1016 2.8680 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 3.8292 -0.0618 -2.9495 34 1 2.2719 2.1231 1.9978 35 1 0.7282 4.1542 2.8666 36 1 0.0681 2.6146 3.4687 37 1 -0.7112 5.7877 1.7937 38 1 -2.9945 6.6861 1.5906 39 1 -4.9268 5.2885 2.2049 40 1 -4.4847 2.6783 5.5152 41 1 -5.5844 4.0110 5.0879 42 1 -6.3613 1.0687 5.3216 43 1 -6.7279 2.3368 6.5154 44 1 -7.4605 2.4018 4.8942 45 1 -2.2915 2.0948 3.2269 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000123988432.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:20 Heat of formation + Delta-G solvation = -118.929402 kcal Electronic energy + Delta-G solvation = -27289.939788 eV Core-core repulsion = 23398.332956 eV Total energy + Delta-G solvation = -3891.606832 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.04820 -39.83013 -38.17147 -37.01364 -36.92205 -34.31984 -34.02962 -33.96522 -32.67927 -32.23357 -29.46904 -28.11906 -25.18610 -25.01942 -23.97354 -23.24482 -21.91767 -21.06509 -19.83348 -19.01874 -18.48591 -17.47746 -17.38724 -17.24765 -17.12467 -16.84613 -16.53453 -16.05892 -15.83157 -15.17350 -15.14001 -14.80793 -14.63199 -14.27084 -14.11096 -14.01538 -13.69320 -13.51790 -13.36420 -13.23107 -13.18661 -13.18038 -13.06111 -12.87417 -12.80014 -12.67504 -12.37347 -12.24333 -12.14896 -12.01804 -11.79746 -11.59661 -11.34175 -11.03854 -10.72492 -10.52905 -10.25628 -9.81013 -9.59382 -8.15814 -6.33391 -0.91591 -0.13404 0.28572 1.43735 1.44828 1.56603 1.89208 1.91503 2.30986 2.42589 2.83590 3.01852 3.13557 3.14219 3.61242 3.73811 3.83513 3.95954 4.05791 4.17707 4.29699 4.31933 4.42165 4.46747 4.49122 4.55350 4.60939 4.74898 4.75956 4.84696 4.85936 4.96935 5.06129 5.06425 5.14999 5.25293 5.28856 5.42591 5.46060 5.56430 5.65261 5.79699 5.87809 5.95117 6.17598 6.76393 7.04460 7.34796 7.65933 8.89743 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.021833 B = 0.002546 C = 0.002422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.134522 B =10996.344334 C =11559.309660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.120 4.120 3 C 0.279 3.721 4 H -0.005 1.005 5 C -0.544 4.544 6 H 0.074 0.926 7 C 0.012 3.988 8 N -0.918 5.918 9 Si 0.971 3.029 10 H -0.258 1.258 11 H -0.280 1.280 12 H -0.286 1.286 13 N -0.706 5.706 14 C 0.494 3.506 15 O -0.587 6.587 16 C -0.097 4.097 17 C -0.091 4.091 18 C -0.063 4.063 19 C -0.141 4.141 20 C -0.039 4.039 21 C -0.665 4.665 22 S 2.487 3.513 23 O -0.975 6.975 24 O -0.981 6.981 25 C -0.573 4.573 26 C -0.165 4.165 27 C -0.032 4.032 28 H 0.041 0.959 29 H 0.045 0.955 30 H 0.021 0.979 31 H 0.069 0.931 32 H 0.043 0.957 33 H 0.264 0.736 34 H 0.406 0.594 35 H 0.133 0.867 36 H 0.129 0.871 37 H 0.143 0.857 38 H 0.159 0.841 39 H 0.158 0.842 40 H 0.162 0.838 41 H 0.167 0.833 42 H 0.070 0.930 43 H 0.112 0.888 44 H 0.075 0.925 45 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.322 10.447 20.985 27.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.159 4.159 3 C 0.175 3.825 4 H 0.012 0.988 5 C -0.582 4.582 6 H 0.093 0.907 7 C -0.188 4.188 8 N -0.556 5.556 9 Si 0.796 3.204 10 H -0.181 1.181 11 H -0.206 1.206 12 H -0.212 1.212 13 N -0.356 5.356 14 C 0.281 3.719 15 O -0.468 6.468 16 C -0.137 4.137 17 C -0.093 4.093 18 C -0.081 4.081 19 C -0.159 4.159 20 C -0.058 4.058 21 C -0.752 4.752 22 S 2.672 3.328 23 O -0.972 6.972 24 O -0.979 6.979 25 C -0.707 4.707 26 C -0.224 4.224 27 C -0.051 4.051 28 H 0.060 0.940 29 H 0.064 0.936 30 H 0.040 0.960 31 H 0.088 0.912 32 H 0.061 0.939 33 H 0.073 0.927 34 H 0.241 0.759 35 H 0.151 0.849 36 H 0.147 0.853 37 H 0.161 0.839 38 H 0.177 0.823 39 H 0.175 0.825 40 H 0.179 0.821 41 H 0.185 0.815 42 H 0.089 0.911 43 H 0.131 0.869 44 H 0.094 0.906 45 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -15.269 9.773 19.557 26.667 hybrid contribution 1.778 0.189 -0.385 1.829 sum -13.491 9.961 19.173 25.472 Atomic orbital electron populations 1.21682 0.97326 0.98913 1.00165 1.21782 0.93308 0.99534 1.01263 1.18312 0.93596 0.88948 0.81653 0.98750 1.21622 0.91392 1.38622 1.06576 0.90746 1.25811 1.03352 0.94482 0.95116 1.70071 1.37042 1.38528 1.09965 0.85316 0.79124 0.77755 0.78233 1.18147 1.20623 1.21194 1.46247 1.15700 1.56151 1.17485 1.21194 0.81644 0.78708 0.90309 1.90702 1.52377 1.60974 1.42748 1.20795 0.94433 1.02956 0.95471 1.19645 0.94589 0.94839 1.00192 1.21658 0.98761 0.94775 0.92921 1.21602 0.91940 1.01755 1.00611 1.21226 1.00999 0.91267 0.92322 1.30522 1.15216 1.10768 1.18656 1.05633 0.73445 0.73735 0.80035 1.93507 1.54168 1.80486 1.69033 1.93535 1.81267 1.36420 1.86630 1.29966 1.10030 1.12924 1.17769 1.21790 0.95226 0.99766 1.05593 1.20914 0.91135 0.98667 0.94406 0.93976 0.93596 0.96020 0.91248 0.93855 0.92713 0.75931 0.84873 0.85287 0.83885 0.82318 0.82469 0.82052 0.81513 0.91076 0.86913 0.90639 0.84449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.90 8.51 71.98 0.61 -5.29 16 2 C -0.12 -6.04 5.45 30.59 0.17 -5.88 16 3 C 0.28 14.26 2.24 44.24 0.10 14.36 16 4 H -0.01 -0.33 7.58 -2.39 -0.02 -0.35 16 5 C -0.54 -28.47 8.73 25.60 0.22 -28.24 16 6 H 0.07 3.60 7.74 -2.91 -0.02 3.58 16 7 C 0.01 0.65 5.29 84.66 0.45 1.10 16 8 N -0.92 -53.16 11.29 21.45 0.24 -52.92 16 9 Si 0.97 41.96 29.54 68.60 2.03 43.99 16 10 H -0.26 -10.40 7.11 99.48 0.71 -9.70 16 11 H -0.28 -11.94 7.11 99.48 0.71 -11.24 16 12 H -0.29 -12.39 7.11 99.48 0.71 -11.69 16 13 N -0.71 -27.93 5.02 -446.10 -2.24 -30.17 16 14 C 0.49 18.54 6.39 87.65 0.56 19.10 16 15 O -0.59 -27.98 13.17 -3.05 -0.04 -28.02 16 16 C -0.10 -2.33 5.83 29.10 0.17 -2.16 16 17 C -0.09 -2.36 4.37 -19.86 -0.09 -2.45 16 18 C -0.06 -1.46 9.70 22.27 0.22 -1.24 16 19 C -0.14 -2.86 10.05 22.27 0.22 -2.63 16 20 C -0.04 -0.84 9.47 22.27 0.21 -0.63 16 21 C -0.67 -15.74 5.66 22.27 0.13 -15.61 16 22 S 2.49 53.04 5.16 -56.49 -0.29 52.74 16 23 O -0.97 -26.32 17.13 -127.65 -2.19 -28.50 16 24 O -0.98 -29.54 17.13 -127.65 -2.19 -31.73 16 25 C -0.57 -4.91 6.70 71.98 0.48 -4.43 16 26 C -0.17 -1.36 9.92 71.98 0.71 -0.65 16 27 C -0.03 -0.85 9.13 22.27 0.20 -0.65 16 28 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 29 H 0.05 2.10 5.65 -2.38 -0.01 2.08 16 30 H 0.02 1.11 7.85 -2.39 -0.02 1.09 16 31 H 0.07 3.93 5.95 -2.39 -0.01 3.92 16 32 H 0.04 2.03 8.14 -2.39 -0.02 2.01 16 33 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16 34 H 0.41 13.04 8.54 -92.71 -0.79 12.25 16 35 H 0.13 2.30 8.08 -2.39 -0.02 2.29 16 36 H 0.13 2.33 8.09 -2.38 -0.02 2.31 16 37 H 0.14 2.77 8.06 -2.91 -0.02 2.74 16 38 H 0.16 2.20 8.06 -2.91 -0.02 2.18 16 39 H 0.16 2.58 7.57 -2.91 -0.02 2.56 16 40 H 0.16 0.70 8.14 -2.39 -0.02 0.68 16 41 H 0.17 0.48 8.14 -2.39 -0.02 0.46 16 42 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 43 H 0.11 0.38 8.14 -2.38 -0.02 0.36 16 44 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 45 H 0.14 3.46 7.57 -2.91 -0.02 3.44 16 Total: -1.00 -84.08 383.23 -0.10 -84.18 By element: Atomic # 1 Polarization: 25.50 SS G_CDS: 0.21 Total: 25.71 kcal Atomic # 6 Polarization: -39.65 SS G_CDS: 4.37 Total: -35.28 kcal Atomic # 7 Polarization: -81.09 SS G_CDS: -2.00 Total: -83.09 kcal Atomic # 8 Polarization: -83.84 SS G_CDS: -4.41 Total: -88.25 kcal Atomic # 14 Polarization: 41.96 SS G_CDS: 2.03 Total: 43.99 kcal Atomic # 16 Polarization: 53.04 SS G_CDS: -0.29 Total: 52.74 kcal Total: -84.08 -0.10 -84.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123988432.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.747 kcal (2) G-P(sol) polarization free energy of solvation -84.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds