Wall clock time and date at job start Tue Mar 31 2020 22:21:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53005 * 109.46967 * 2 1 4 4 N 1.46502 * 109.47149 * 179.97438 * 3 2 1 5 5 C 1.36869 * 119.99907 * 274.12334 * 4 3 2 6 6 H 1.08000 * 119.99833 * 134.41837 * 5 4 3 7 7 C 1.39044 * 120.00144 * 314.40915 * 5 4 3 8 8 N 1.31365 * 120.00109 * 2.35876 * 7 5 4 9 9 Si 1.86799 * 120.00053 * 182.35579 * 7 5 4 10 10 H 1.48494 * 109.47136 * 90.00297 * 9 7 5 11 11 H 1.48509 * 109.47108 * 210.00070 * 9 7 5 12 12 H 1.48495 * 109.47132 * 329.99967 * 9 7 5 13 13 C 1.34774 * 119.99702 * 94.11925 * 4 3 2 14 14 O 1.21596 * 120.00110 * 4.26179 * 13 4 3 15 15 C 1.47726 * 120.00040 * 184.26069 * 13 4 3 16 16 C 1.39670 * 120.14845 * 326.26148 * 15 13 4 17 17 C 1.37911 * 119.84323 * 179.97438 * 16 15 13 18 18 C 1.38397 * 120.15477 * 0.25901 * 17 16 15 19 19 C 1.50703 * 119.84751 * 179.74302 * 18 17 16 20 20 C 1.52990 * 109.47114 * 272.76624 * 19 18 17 21 21 C 1.38357 * 120.30402 * 359.48133 * 18 17 16 22 22 S 1.76195 * 119.92383 * 180.26037 * 21 18 17 23 23 C 1.81399 * 104.45219 * 68.42885 * 22 21 18 24 24 O 1.42099 * 104.27804 * 184.49567 * 22 21 18 25 25 O 1.42094 * 104.28095 * 312.35436 * 22 21 18 26 26 C 1.37957 * 120.14787 * 0.51376 * 21 18 17 27 27 H 1.08992 * 109.47225 * 59.99606 * 1 2 3 28 28 H 1.08996 * 109.47217 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.46593 * 299.99600 * 1 2 3 30 30 H 1.08998 * 109.47331 * 240.00376 * 2 1 3 31 31 H 1.09000 * 109.47377 * 120.00112 * 2 1 3 32 32 H 1.08998 * 109.46788 * 60.00043 * 3 2 1 33 33 H 1.09000 * 109.47164 * 300.00243 * 3 2 1 34 34 H 0.96998 * 120.00635 * 180.02562 * 8 7 5 35 35 H 1.07995 * 120.07516 * 359.95262 * 16 15 13 36 36 H 1.08004 * 119.92468 * 179.97438 * 17 16 15 37 37 H 1.09004 * 109.47072 * 32.76843 * 19 18 17 38 38 H 1.09005 * 109.46577 * 152.76330 * 19 18 17 39 39 H 1.09005 * 109.47548 * 306.49499 * 20 19 18 40 40 H 1.09002 * 109.47618 * 66.49937 * 20 19 18 41 41 H 1.09004 * 109.47476 * 186.50001 * 20 19 18 42 42 H 1.09007 * 109.47247 * 65.72587 * 23 22 21 43 43 H 1.08994 * 109.47623 * 185.73064 * 23 22 21 44 44 H 1.09007 * 109.46961 * 305.73634 * 23 22 21 45 45 H 1.08004 * 120.07622 * 179.76600 * 26 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5051 1.4426 0.0006 5 6 4.1889 1.3576 1.1832 6 1 5.0258 0.6812 1.2756 7 6 3.8063 2.1421 2.2655 8 7 2.7602 2.9307 2.1680 9 14 4.7797 2.0747 3.8584 10 1 5.8608 3.0920 3.8212 11 1 3.8759 2.3545 5.0031 12 1 5.3761 0.7241 4.0172 13 6 4.1794 1.5263 -1.1633 14 8 3.5743 1.6797 -2.2068 15 6 5.6536 1.4317 -1.1713 16 6 6.3951 1.9430 -0.1039 17 6 7.7711 1.8508 -0.1177 18 6 8.4175 1.2582 -1.1884 19 6 9.9217 1.1663 -1.1989 20 6 10.5064 2.4443 -1.8034 21 6 7.6888 0.7448 -2.2465 22 16 8.5217 -0.0138 -3.6013 23 6 9.2210 -1.5369 -2.9073 24 8 7.4850 -0.3168 -4.5247 25 8 9.5552 0.9026 -3.9349 26 6 6.3119 0.8301 -2.2457 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3632 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6767 1.9564 -0.8900 34 1 2.4934 3.4783 2.9228 35 1 5.8922 2.4098 0.7300 36 1 8.3459 2.2462 0.7068 37 1 10.2856 1.0475 -0.1783 38 1 10.2290 0.3080 -1.7965 39 1 10.0546 2.6247 -2.7789 40 1 10.2968 3.2869 -1.1445 41 1 11.5846 2.3320 -1.9177 42 1 8.4128 -2.2074 -2.6146 43 1 9.8445 -2.0248 -3.6565 44 1 9.8257 -1.2939 -2.0336 45 1 5.7444 0.4324 -3.0741 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000125764904.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:57 Heat of formation + Delta-G solvation = -77.009902 kcal Electronic energy + Delta-G solvation = -28377.349406 eV Core-core repulsion = 24487.560340 eV Total energy + Delta-G solvation = -3889.789066 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 2.07 seconds Orbital eigenvalues (eV) -39.68222 -38.13807 -37.08735 -35.85593 -35.26499 -33.97522 -32.83144 -31.49950 -30.84213 -29.66107 -29.30075 -26.06141 -25.13588 -23.76257 -22.79136 -21.37977 -20.65812 -19.70261 -18.83496 -18.00847 -16.65557 -16.34623 -16.03134 -15.64799 -15.37010 -15.03102 -14.53898 -14.42400 -14.03523 -13.86686 -13.78132 -13.57872 -13.53867 -13.25395 -13.11531 -12.83610 -12.54102 -12.22733 -12.06656 -11.90198 -11.71053 -11.65864 -11.52699 -11.47861 -11.28157 -11.11673 -11.01829 -10.94983 -10.79942 -10.75475 -10.48662 -10.34430 -10.23719 -9.72994 -9.27252 -8.89752 -8.67374 -8.36199 -7.57441 -6.43777 -4.34503 0.11470 1.16300 1.51662 2.93195 2.96987 3.06740 3.08518 3.46434 3.86932 3.91155 4.16526 4.27919 4.56657 4.59525 4.72832 4.74285 4.86205 5.00032 5.20060 5.36871 5.45782 5.60617 5.68715 5.74749 5.79516 5.80958 5.84978 5.95345 6.04613 6.05621 6.16976 6.26908 6.39170 6.51413 6.53498 6.57765 6.68966 6.75463 6.82126 6.94350 7.12491 7.15678 7.24980 7.57838 7.87732 8.24880 8.86744 9.33141 9.77440 10.47693 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.013011 B = 0.004210 C = 0.003438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2151.548140 B = 6649.346248 C = 8143.159695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.131 4.131 3 C 0.097 3.903 4 N -0.431 5.431 5 C -0.341 4.341 6 H 0.090 0.910 7 C 0.046 3.954 8 N -0.860 5.860 9 Si 0.912 3.088 10 H -0.272 1.272 11 H -0.279 1.279 12 H -0.267 1.267 13 C 0.511 3.489 14 O -0.593 6.593 15 C -0.116 4.116 16 C -0.013 4.013 17 C -0.159 4.159 18 C 0.013 3.987 19 C -0.105 4.105 20 C -0.147 4.147 21 C -0.674 4.674 22 S 2.498 3.502 23 C -0.660 4.660 24 O -0.941 6.941 25 O -0.934 6.934 26 C 0.017 3.983 27 H 0.049 0.951 28 H 0.044 0.956 29 H 0.052 0.948 30 H 0.045 0.955 31 H 0.059 0.941 32 H 0.127 0.873 33 H 0.054 0.946 34 H 0.273 0.727 35 H 0.169 0.831 36 H 0.128 0.872 37 H 0.083 0.917 38 H 0.063 0.937 39 H 0.084 0.916 40 H 0.052 0.948 41 H 0.057 0.943 42 H 0.133 0.867 43 H 0.129 0.871 44 H 0.133 0.867 45 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.877 -6.218 -1.205 13.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.169 4.169 3 C -0.026 4.026 4 N -0.148 5.148 5 C -0.469 4.469 6 H 0.108 0.892 7 C -0.160 4.160 8 N -0.496 5.496 9 Si 0.737 3.263 10 H -0.197 1.197 11 H -0.204 1.204 12 H -0.191 1.191 13 C 0.299 3.701 14 O -0.479 6.479 15 C -0.120 4.120 16 C -0.031 4.031 17 C -0.178 4.178 18 C 0.012 3.988 19 C -0.142 4.142 20 C -0.204 4.204 21 C -0.762 4.762 22 S 2.679 3.321 23 C -0.809 4.809 24 O -0.938 6.938 25 O -0.931 6.931 26 C -0.003 4.003 27 H 0.068 0.932 28 H 0.063 0.937 29 H 0.072 0.928 30 H 0.064 0.936 31 H 0.077 0.923 32 H 0.144 0.856 33 H 0.072 0.928 34 H 0.084 0.916 35 H 0.186 0.814 36 H 0.146 0.854 37 H 0.101 0.899 38 H 0.081 0.919 39 H 0.103 0.897 40 H 0.071 0.929 41 H 0.076 0.924 42 H 0.152 0.848 43 H 0.148 0.852 44 H 0.152 0.848 45 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 11.467 -5.697 -2.396 13.027 hybrid contribution 0.238 -0.344 1.931 1.976 sum 11.706 -6.041 -0.465 13.181 Atomic orbital electron populations 1.21645 0.96562 1.00359 1.01444 1.21797 0.94717 0.99436 1.00976 1.21872 0.81042 0.94934 1.04735 1.43273 1.05085 1.62036 1.04368 1.19460 1.15296 1.22888 0.89296 0.89209 1.25555 0.96280 0.94512 0.99687 1.69540 1.23447 1.24395 1.32197 0.86152 0.79747 0.79177 0.81189 1.19714 1.20428 1.19109 1.18310 0.86222 0.80761 0.84758 1.90650 1.69655 1.55089 1.32524 1.20207 0.95054 1.01569 0.95161 1.22671 0.92999 0.90584 0.96855 1.21134 0.94857 1.02988 0.98777 1.19579 0.94569 0.92695 0.91996 1.20961 0.90690 1.00083 1.02481 1.21805 1.00547 0.95425 1.02669 1.29928 1.04902 1.22126 1.19293 1.05111 0.75127 0.76829 0.75041 1.30401 1.14020 1.22193 1.14260 1.93570 1.55793 1.85284 1.59179 1.93572 1.58201 1.59227 1.82136 1.20975 0.91484 0.91426 0.96405 0.93209 0.93734 0.92844 0.93570 0.92253 0.85617 0.92776 0.91572 0.81428 0.85398 0.89881 0.91864 0.89730 0.92877 0.92356 0.84811 0.85248 0.84826 0.83644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.40 9.91 37.16 0.37 -2.03 16 2 C -0.13 -2.66 6.24 -26.72 -0.17 -2.83 16 3 C 0.10 2.28 5.13 -4.04 -0.02 2.26 16 4 N -0.43 -10.54 2.52 -115.92 -0.29 -10.83 16 5 C -0.34 -7.98 6.00 -15.00 -0.09 -8.07 16 6 H 0.09 2.02 6.54 -52.49 -0.34 1.68 16 7 C 0.05 1.06 5.23 -17.45 -0.09 0.97 16 8 N -0.86 -21.06 10.76 55.50 0.60 -20.46 16 9 Si 0.91 17.71 29.55 -169.99 -5.02 12.69 16 10 H -0.27 -5.17 7.11 56.52 0.40 -4.76 16 11 H -0.28 -5.51 7.11 56.52 0.40 -5.11 16 12 H -0.27 -5.08 7.11 56.52 0.40 -4.68 16 13 C 0.51 12.67 7.39 -12.38 -0.09 12.58 16 14 O -0.59 -16.20 16.30 5.28 0.09 -16.11 16 15 C -0.12 -2.47 5.51 -104.97 -0.58 -3.05 16 16 C -0.01 -0.25 7.84 -39.17 -0.31 -0.55 16 17 C -0.16 -2.47 9.69 -39.64 -0.38 -2.86 16 18 C 0.01 0.19 5.12 -104.52 -0.54 -0.35 16 19 C -0.10 -1.16 5.26 -27.89 -0.15 -1.31 16 20 C -0.15 -1.71 9.36 37.15 0.35 -1.36 16 21 C -0.67 -10.57 5.59 -39.64 -0.22 -10.79 16 22 S 2.50 32.17 5.15 -107.50 -0.55 31.61 16 23 C -0.66 -5.22 10.42 101.05 1.05 -4.16 16 24 O -0.94 -15.53 16.74 -57.54 -0.96 -16.49 16 25 O -0.93 -13.24 13.83 -57.54 -0.80 -14.04 16 26 C 0.02 0.33 9.06 -39.17 -0.35 -0.03 16 27 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 30 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 31 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.13 3.11 5.16 -51.93 -0.27 2.84 16 33 H 0.05 1.34 7.25 -51.93 -0.38 0.96 16 34 H 0.27 6.33 8.31 -40.82 -0.34 5.99 16 35 H 0.17 3.39 5.44 -52.49 -0.29 3.11 16 36 H 0.13 1.64 8.06 -52.48 -0.42 1.21 16 37 H 0.08 0.74 8.10 -51.93 -0.42 0.32 16 38 H 0.06 0.58 3.73 -51.93 -0.19 0.38 16 39 H 0.08 1.16 6.17 -51.93 -0.32 0.84 16 40 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.13 0.95 8.14 -51.92 -0.42 0.53 16 43 H 0.13 0.73 8.14 -51.93 -0.42 0.30 16 44 H 0.13 0.85 6.00 -51.92 -0.31 0.54 16 45 H 0.15 2.87 7.14 -52.48 -0.37 2.49 16 LS Contribution 369.12 15.07 5.56 5.56 Total: -1.00 -31.41 369.12 -8.86 -40.27 By element: Atomic # 1 Polarization: 15.61 SS G_CDS: -6.26 Total: 9.36 kcal Atomic # 6 Polarization: -20.34 SS G_CDS: -1.22 Total: -21.56 kcal Atomic # 7 Polarization: -31.60 SS G_CDS: 0.30 Total: -31.29 kcal Atomic # 8 Polarization: -44.97 SS G_CDS: -1.67 Total: -46.64 kcal Atomic # 14 Polarization: 17.71 SS G_CDS: -5.02 Total: 12.69 kcal Atomic # 16 Polarization: 32.17 SS G_CDS: -0.55 Total: 31.61 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.41 -8.86 -40.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125764904.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.737 kcal (2) G-P(sol) polarization free energy of solvation -31.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.08 seconds