Wall clock time and date at job start Tue Mar 31 2020 22:20:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47539 * 2 1 4 4 N 1.46503 * 109.47314 * 120.00042 * 2 1 3 5 5 C 1.46491 * 119.99907 * 299.99757 * 4 2 1 6 6 C 1.34778 * 119.99958 * 119.99494 * 4 2 1 7 7 O 1.21552 * 120.00298 * 4.30960 * 6 4 2 8 8 C 1.47845 * 119.99784 * 184.31032 * 6 4 2 9 9 C 1.39582 * 120.14634 * 148.07194 * 8 6 4 10 10 C 1.37950 * 119.85383 * 180.02562 * 9 8 6 11 11 C 1.38360 * 120.14712 * 0.02562 * 10 9 8 12 12 S 1.76197 * 119.85290 * 179.97438 * 11 10 9 13 13 O 1.42101 * 104.27812 * 206.07114 * 12 11 10 14 14 O 1.42093 * 104.28120 * 333.92626 * 12 11 10 15 15 C 1.81401 * 104.45227 * 90.00233 * 12 11 10 16 16 C 1.53002 * 109.47334 * 179.97438 * 15 12 11 17 17 C 1.50698 * 109.46936 * 179.97438 * 16 15 12 18 18 H 1.07995 * 120.00393 * 0.02562 * 17 16 15 19 19 C 1.37877 * 119.99622 * 179.97438 * 17 16 15 20 20 N 1.31508 * 120.00321 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 119.99955 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47026 * 60.00373 * 21 19 17 23 23 H 1.48497 * 109.47375 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.47055 * 300.00895 * 21 19 17 25 25 C 1.38356 * 120.29003 * 0.23057 * 11 10 9 26 26 C 1.37959 * 120.14490 * 359.49184 * 25 11 10 27 27 H 1.09004 * 109.46862 * 300.00279 * 1 2 3 28 28 H 1.08996 * 109.47149 * 59.99835 * 1 2 3 29 29 H 1.08998 * 109.47420 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46862 * 239.99720 * 2 1 3 31 31 H 1.08995 * 109.47164 * 60.00126 * 3 2 1 32 32 H 1.08999 * 109.47019 * 180.02562 * 3 2 1 33 33 H 1.09006 * 109.46787 * 299.99736 * 3 2 1 34 34 H 1.08996 * 109.47317 * 274.52519 * 5 4 2 35 35 H 1.09008 * 109.47494 * 34.52975 * 5 4 2 36 36 H 1.09001 * 109.47314 * 154.52512 * 5 4 2 37 37 H 1.08004 * 120.06700 * 0.02562 * 9 8 6 38 38 H 1.08006 * 119.92796 * 180.02562 * 10 9 8 39 39 H 1.08999 * 109.46656 * 299.99745 * 15 12 11 40 40 H 1.09001 * 109.47505 * 59.99459 * 15 12 11 41 41 H 1.08999 * 109.47166 * 299.99586 * 16 15 12 42 42 H 1.09003 * 109.46588 * 59.99910 * 16 15 12 43 43 H 0.97003 * 120.00594 * 179.97438 * 20 19 17 44 44 H 1.08005 * 119.92723 * 179.74641 * 25 11 10 45 45 H 1.08007 * 120.07144 * 180.24766 * 26 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 1.6645 -0.1901 2.5267 6 6 2.7932 -1.7865 1.0725 7 8 3.1515 -2.1564 -0.0286 8 6 3.2072 -2.5387 2.2760 9 6 3.3956 -3.9201 2.2089 10 6 3.7815 -4.6161 3.3358 11 6 3.9813 -3.9478 4.5308 12 16 4.4734 -4.8445 5.9654 13 8 3.9978 -4.0591 7.0499 14 8 3.9826 -6.1592 5.7426 15 6 6.2866 -4.8244 5.9120 16 6 6.8409 -5.5804 7.1212 17 6 8.3471 -5.5641 7.0764 18 1 8.8580 -5.0642 6.2669 19 6 9.0730 -6.1866 8.0697 20 7 8.4510 -6.7949 9.0559 21 14 10.9401 -6.1658 8.0147 22 1 11.4207 -4.7611 8.0459 23 1 11.4782 -6.8997 9.1882 24 1 11.4058 -6.8206 6.7659 25 6 3.7911 -2.5794 4.6053 26 6 3.4108 -1.8707 3.4845 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.6768 1.9563 0.8900 32 1 3.1301 1.4424 -0.0005 33 1 1.6768 1.9563 -0.8901 34 1 2.3707 0.5856 2.8227 35 1 0.6571 0.2256 2.5025 36 1 1.7024 -1.0091 3.2449 37 1 3.2396 -4.4429 1.2768 38 1 3.9280 -5.6849 3.2851 39 1 6.6283 -5.3044 4.9950 40 1 6.6394 -3.7933 5.9356 41 1 6.4991 -5.1000 8.0380 42 1 6.4881 -6.6115 7.0979 43 1 8.9617 -7.2332 9.7545 44 1 3.9448 -2.0643 5.5421 45 1 3.2666 -0.8019 3.5431 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000130041143.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:20 Heat of formation + Delta-G solvation = -69.399230 kcal Electronic energy + Delta-G solvation = -26757.162942 eV Core-core repulsion = 22867.703900 eV Total energy + Delta-G solvation = -3889.459042 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.95090 -38.76783 -36.90221 -36.67016 -35.51037 -33.94239 -33.53404 -31.42123 -31.21666 -30.95283 -27.71659 -27.61922 -25.69974 -24.80250 -23.07922 -21.93537 -21.45372 -19.81095 -18.78797 -17.92142 -17.64775 -16.92034 -16.46285 -16.10359 -15.64933 -15.35126 -15.09851 -14.83852 -14.80387 -14.54854 -14.35026 -13.94033 -13.64064 -13.50576 -13.45921 -13.16186 -13.08529 -12.65753 -12.56699 -12.52805 -12.26658 -11.80925 -11.77977 -11.64548 -11.58447 -11.38205 -11.26403 -11.08922 -11.01109 -10.80526 -10.45270 -10.41942 -10.23458 -9.77004 -9.53842 -9.28729 -9.17531 -9.11716 -8.52407 -6.14881 -4.20853 0.17909 0.56123 1.04901 2.30841 2.46862 3.23941 3.26548 3.31594 3.32959 3.35337 3.99744 4.24289 4.29057 4.36775 4.43441 4.52775 4.56361 4.67830 4.68756 4.78240 4.96207 5.05562 5.08128 5.10974 5.15788 5.20557 5.23540 5.31023 5.33828 5.45824 5.59338 5.63965 5.66084 5.70073 5.73954 5.78095 5.89597 5.94788 6.10709 6.40278 6.51189 6.86728 7.25836 7.31290 7.70645 7.77788 8.13144 8.82276 9.44084 10.95916 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.021192 B = 0.002288 C = 0.002211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.958738 B =12232.648517 C =12661.804546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.129 3.871 3 C -0.161 4.161 4 N -0.605 5.605 5 C 0.052 3.948 6 C 0.559 3.441 7 O -0.530 6.530 8 C -0.091 4.091 9 C -0.085 4.085 10 C -0.030 4.030 11 C -0.633 4.633 12 S 2.471 3.529 13 O -0.943 6.943 14 O -0.943 6.943 15 C -0.563 4.563 16 C 0.026 3.974 17 C -0.522 4.522 18 H 0.062 0.938 19 C 0.059 3.941 20 N -0.889 5.889 21 Si 0.901 3.099 22 H -0.275 1.275 23 H -0.285 1.285 24 H -0.275 1.275 25 C -0.033 4.033 26 C -0.127 4.127 27 H 0.060 0.940 28 H 0.070 0.930 29 H 0.060 0.940 30 H 0.103 0.897 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.069 0.931 34 H 0.064 0.936 35 H 0.074 0.926 36 H 0.095 0.905 37 H 0.140 0.860 38 H 0.151 0.849 39 H 0.125 0.875 40 H 0.125 0.875 41 H 0.036 0.964 42 H 0.036 0.964 43 H 0.266 0.734 44 H 0.150 0.850 45 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.401 15.689 -15.767 27.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.027 3.973 3 C -0.219 4.219 4 N -0.338 5.338 5 C -0.090 4.090 6 C 0.348 3.652 7 O -0.407 6.407 8 C -0.094 4.094 9 C -0.105 4.105 10 C -0.048 4.048 11 C -0.716 4.716 12 S 2.653 3.347 13 O -0.941 6.941 14 O -0.940 6.940 15 C -0.696 4.696 16 C -0.012 4.012 17 C -0.561 4.561 18 H 0.080 0.920 19 C -0.144 4.144 20 N -0.527 5.527 21 Si 0.728 3.272 22 H -0.201 1.201 23 H -0.211 1.211 24 H -0.200 1.200 25 C -0.051 4.051 26 C -0.145 4.145 27 H 0.079 0.921 28 H 0.089 0.911 29 H 0.079 0.921 30 H 0.121 0.879 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.088 0.912 34 H 0.083 0.917 35 H 0.092 0.908 36 H 0.113 0.887 37 H 0.158 0.842 38 H 0.168 0.832 39 H 0.143 0.857 40 H 0.143 0.857 41 H 0.055 0.945 42 H 0.055 0.945 43 H 0.076 0.924 44 H 0.168 0.832 45 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -15.830 15.067 -15.646 26.878 hybrid contribution 1.326 0.526 -0.611 1.552 sum -14.505 15.594 -16.257 26.792 Atomic orbital electron populations 1.22155 0.94648 1.02648 1.02585 1.21132 0.94214 0.93307 0.88696 1.22136 1.01894 0.95317 1.02551 1.47808 1.50622 1.27850 1.07522 1.22533 1.01418 1.00839 0.84205 1.18427 0.78083 0.79959 0.88767 1.90786 1.54897 1.67882 1.27181 1.20109 1.01030 0.94821 0.93405 1.21315 0.97442 0.92550 0.99167 1.21021 0.92620 1.00745 0.90455 1.31329 1.13996 1.06972 1.19327 1.06493 0.79935 0.74418 0.73834 1.93525 1.79694 1.70533 1.50313 1.93531 1.79194 1.36382 1.84898 1.30196 1.17635 1.10795 1.10986 1.19037 0.98012 0.95233 0.88959 1.20944 0.89813 1.35890 1.09488 0.91971 1.25059 0.99139 0.95001 0.95221 1.69936 1.36031 1.34849 1.11912 0.86517 0.84721 0.78306 0.77662 1.20062 1.21074 1.20048 1.20999 0.92819 0.92142 0.99170 1.21978 0.99478 1.01290 0.91793 0.92096 0.91120 0.92136 0.87928 0.92172 0.92114 0.91210 0.91723 0.90780 0.88709 0.84187 0.83184 0.85653 0.85686 0.94542 0.94538 0.92416 0.83250 0.83270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.89 9.16 37.16 0.34 -0.55 16 2 C 0.13 0.94 3.25 -67.93 -0.22 0.72 16 3 C -0.16 -0.90 9.19 37.16 0.34 -0.56 16 4 N -0.60 -5.16 2.76 -175.05 -0.48 -5.64 16 5 C 0.05 0.30 7.88 59.84 0.47 0.77 16 6 C 0.56 6.54 7.44 -12.33 -0.09 6.45 16 7 O -0.53 -7.86 16.09 5.32 0.09 -7.78 16 8 C -0.09 -1.04 5.47 -104.97 -0.57 -1.62 16 9 C -0.09 -1.03 9.60 -39.19 -0.38 -1.40 16 10 C -0.03 -0.38 9.45 -39.64 -0.37 -0.76 16 11 C -0.63 -8.66 5.66 -39.49 -0.22 -8.88 16 12 S 2.47 41.75 5.15 -107.50 -0.55 41.20 16 13 O -0.94 -18.03 17.10 -57.54 -0.98 -19.02 16 14 O -0.94 -18.37 17.11 -57.54 -0.98 -19.36 16 15 C -0.56 -10.12 5.92 37.16 0.22 -9.90 16 16 C 0.03 0.64 4.98 -27.88 -0.14 0.51 16 17 C -0.52 -14.01 9.11 -34.44 -0.31 -14.32 16 18 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 19 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 20 N -0.89 -25.89 13.29 55.43 0.74 -25.15 16 21 Si 0.90 20.86 29.54 -169.99 -5.02 15.84 16 22 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 23 H -0.29 -6.56 7.11 56.52 0.40 -6.15 16 24 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 25 C -0.03 -0.38 9.45 -39.64 -0.37 -0.76 16 26 C -0.13 -1.27 7.44 -39.19 -0.29 -1.56 16 27 H 0.06 0.28 6.69 -51.93 -0.35 -0.07 16 28 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.10 0.94 6.91 -51.93 -0.36 0.58 16 31 H 0.06 0.28 7.67 -51.93 -0.40 -0.12 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 34 H 0.06 0.28 7.44 -51.93 -0.39 -0.10 16 35 H 0.07 0.31 6.45 -51.92 -0.33 -0.02 16 36 H 0.09 0.59 4.72 -51.93 -0.24 0.35 16 37 H 0.14 1.53 7.96 -52.48 -0.42 1.12 16 38 H 0.15 1.75 7.56 -52.48 -0.40 1.36 16 39 H 0.13 2.01 8.14 -51.92 -0.42 1.58 16 40 H 0.12 1.97 8.14 -51.92 -0.42 1.55 16 41 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 43 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 44 H 0.15 1.54 7.55 -52.48 -0.40 1.14 16 45 H 0.15 1.03 4.80 -52.48 -0.25 0.78 16 LS Contribution 380.77 15.07 5.74 5.74 Total: -1.00 -35.70 380.77 -9.63 -45.33 By element: Atomic # 1 Polarization: 5.64 SS G_CDS: -6.46 Total: -0.82 kcal Atomic # 6 Polarization: -28.63 SS G_CDS: -1.70 Total: -30.34 kcal Atomic # 7 Polarization: -31.05 SS G_CDS: 0.25 Total: -30.79 kcal Atomic # 8 Polarization: -44.27 SS G_CDS: -1.88 Total: -46.15 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Atomic # 16 Polarization: 41.75 SS G_CDS: -0.55 Total: 41.20 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -35.70 -9.63 -45.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130041143.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.073 kcal (2) G-P(sol) polarization free energy of solvation -35.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds