Wall clock time and date at job start Tue Mar 31 2020 22:20:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47539 * 2 1 4 4 N 1.46503 * 109.47314 * 120.00042 * 2 1 3 5 5 C 1.46491 * 119.99907 * 299.99757 * 4 2 1 6 6 C 1.34778 * 119.99958 * 119.99494 * 4 2 1 7 7 O 1.21552 * 120.00298 * 4.30960 * 6 4 2 8 8 C 1.47845 * 119.99784 * 184.31032 * 6 4 2 9 9 C 1.39582 * 120.14634 * 148.07194 * 8 6 4 10 10 C 1.37950 * 119.85383 * 180.02562 * 9 8 6 11 11 C 1.38360 * 120.14712 * 0.02562 * 10 9 8 12 12 S 1.76197 * 119.85290 * 179.97438 * 11 10 9 13 13 O 1.42101 * 104.27812 * 206.07114 * 12 11 10 14 14 O 1.42093 * 104.28120 * 333.92626 * 12 11 10 15 15 C 1.81401 * 104.45227 * 90.00233 * 12 11 10 16 16 C 1.53002 * 109.47334 * 179.97438 * 15 12 11 17 17 C 1.50698 * 109.46936 * 179.97438 * 16 15 12 18 18 H 1.07995 * 120.00393 * 0.02562 * 17 16 15 19 19 C 1.37877 * 119.99622 * 179.97438 * 17 16 15 20 20 N 1.31508 * 120.00321 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 119.99955 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47026 * 60.00373 * 21 19 17 23 23 H 1.48497 * 109.47375 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.47055 * 300.00895 * 21 19 17 25 25 C 1.38356 * 120.29003 * 0.23057 * 11 10 9 26 26 C 1.37959 * 120.14490 * 359.49184 * 25 11 10 27 27 H 1.09004 * 109.46862 * 300.00279 * 1 2 3 28 28 H 1.08996 * 109.47149 * 59.99835 * 1 2 3 29 29 H 1.08998 * 109.47420 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46862 * 239.99720 * 2 1 3 31 31 H 1.08995 * 109.47164 * 60.00126 * 3 2 1 32 32 H 1.08999 * 109.47019 * 180.02562 * 3 2 1 33 33 H 1.09006 * 109.46787 * 299.99736 * 3 2 1 34 34 H 1.08996 * 109.47317 * 274.52519 * 5 4 2 35 35 H 1.09008 * 109.47494 * 34.52975 * 5 4 2 36 36 H 1.09001 * 109.47314 * 154.52512 * 5 4 2 37 37 H 1.08004 * 120.06700 * 0.02562 * 9 8 6 38 38 H 1.08006 * 119.92796 * 180.02562 * 10 9 8 39 39 H 1.08999 * 109.46656 * 299.99745 * 15 12 11 40 40 H 1.09001 * 109.47505 * 59.99459 * 15 12 11 41 41 H 1.08999 * 109.47166 * 299.99586 * 16 15 12 42 42 H 1.09003 * 109.46588 * 59.99910 * 16 15 12 43 43 H 0.97003 * 120.00594 * 179.97438 * 20 19 17 44 44 H 1.08005 * 119.92723 * 179.74641 * 25 11 10 45 45 H 1.08007 * 120.07144 * 180.24766 * 26 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 1.6645 -0.1901 2.5267 6 6 2.7932 -1.7865 1.0725 7 8 3.1515 -2.1564 -0.0286 8 6 3.2072 -2.5387 2.2760 9 6 3.3956 -3.9201 2.2089 10 6 3.7815 -4.6161 3.3358 11 6 3.9813 -3.9478 4.5308 12 16 4.4734 -4.8445 5.9654 13 8 3.9978 -4.0591 7.0499 14 8 3.9826 -6.1592 5.7426 15 6 6.2866 -4.8244 5.9120 16 6 6.8409 -5.5804 7.1212 17 6 8.3471 -5.5641 7.0764 18 1 8.8580 -5.0642 6.2669 19 6 9.0730 -6.1866 8.0697 20 7 8.4510 -6.7949 9.0559 21 14 10.9401 -6.1658 8.0147 22 1 11.4207 -4.7611 8.0459 23 1 11.4782 -6.8997 9.1882 24 1 11.4058 -6.8206 6.7659 25 6 3.7911 -2.5794 4.6053 26 6 3.4108 -1.8707 3.4845 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.6768 1.9563 0.8900 32 1 3.1301 1.4424 -0.0005 33 1 1.6768 1.9563 -0.8901 34 1 2.3707 0.5856 2.8227 35 1 0.6571 0.2256 2.5025 36 1 1.7024 -1.0091 3.2449 37 1 3.2396 -4.4429 1.2768 38 1 3.9280 -5.6849 3.2851 39 1 6.6283 -5.3044 4.9950 40 1 6.6394 -3.7933 5.9356 41 1 6.4991 -5.1000 8.0380 42 1 6.4881 -6.6115 7.0979 43 1 8.9617 -7.2332 9.7545 44 1 3.9448 -2.0643 5.5421 45 1 3.2666 -0.8019 3.5431 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000130041143.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:19 Heat of formation + Delta-G solvation = -93.449434 kcal Electronic energy + Delta-G solvation = -26758.205837 eV Core-core repulsion = 22867.703900 eV Total energy + Delta-G solvation = -3890.501937 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.77562 -39.65823 -38.14317 -37.65114 -36.98323 -35.87556 -34.24265 -33.11615 -32.34917 -31.77298 -28.22671 -28.11507 -27.59108 -25.75994 -23.98797 -23.49611 -22.47570 -20.50736 -20.07028 -19.14311 -18.67522 -18.30512 -17.63709 -17.12523 -16.92605 -16.60997 -16.50682 -16.01380 -15.77563 -15.55901 -15.10361 -14.95136 -14.76648 -14.49438 -14.35785 -14.15259 -14.01792 -13.84180 -13.70176 -13.18555 -13.14331 -13.11544 -12.99939 -12.89043 -12.85766 -12.78591 -12.28788 -12.20599 -12.18569 -12.14736 -12.04845 -11.79652 -11.66334 -11.22228 -10.96721 -10.61249 -10.47908 -10.15009 -9.80530 -8.23694 -6.37133 -0.97666 -0.64605 0.14035 1.40740 1.43138 1.45921 1.53984 1.76822 1.99811 2.36100 2.40857 2.91232 3.09811 3.14203 3.23722 3.63549 3.74925 3.90014 4.04375 4.05104 4.09570 4.11223 4.19272 4.27933 4.33276 4.43441 4.56942 4.65088 4.71760 4.78003 4.78991 4.83718 4.84824 4.91133 4.93723 4.98912 5.03931 5.24802 5.30783 5.31157 5.31976 5.48068 5.59489 5.70920 6.08294 6.15092 6.76283 6.89220 7.32681 8.88080 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.021192 B = 0.002288 C = 0.002211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.958738 B =12232.648517 C =12661.804546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.123 3.877 3 C -0.154 4.154 4 N -0.596 5.596 5 C 0.040 3.960 6 C 0.553 3.447 7 O -0.573 6.573 8 C -0.092 4.092 9 C -0.092 4.092 10 C -0.038 4.038 11 C -0.634 4.634 12 S 2.493 3.507 13 O -0.969 6.969 14 O -0.976 6.976 15 C -0.564 4.564 16 C 0.018 3.982 17 C -0.539 4.539 18 H 0.076 0.924 19 C -0.003 4.003 20 N -0.932 5.932 21 Si 0.971 3.029 22 H -0.263 1.263 23 H -0.285 1.285 24 H -0.265 1.265 25 C -0.036 4.036 26 C -0.110 4.110 27 H 0.077 0.923 28 H 0.084 0.916 29 H 0.045 0.955 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.046 0.954 33 H 0.082 0.918 34 H 0.088 0.912 35 H 0.096 0.904 36 H 0.092 0.908 37 H 0.145 0.855 38 H 0.155 0.845 39 H 0.145 0.855 40 H 0.150 0.850 41 H 0.013 0.987 42 H 0.010 0.990 43 H 0.267 0.733 44 H 0.167 0.833 45 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.647 18.674 -16.954 29.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.021 3.979 3 C -0.212 4.212 4 N -0.328 5.328 5 C -0.101 4.101 6 C 0.342 3.658 7 O -0.453 6.453 8 C -0.095 4.095 9 C -0.112 4.112 10 C -0.057 4.057 11 C -0.722 4.722 12 S 2.679 3.321 13 O -0.966 6.966 14 O -0.973 6.973 15 C -0.696 4.696 16 C -0.021 4.021 17 C -0.578 4.578 18 H 0.094 0.906 19 C -0.201 4.201 20 N -0.572 5.572 21 Si 0.795 3.205 22 H -0.187 1.187 23 H -0.211 1.211 24 H -0.190 1.190 25 C -0.055 4.055 26 C -0.128 4.128 27 H 0.095 0.905 28 H 0.103 0.897 29 H 0.064 0.936 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.065 0.935 33 H 0.101 0.899 34 H 0.106 0.894 35 H 0.114 0.886 36 H 0.110 0.890 37 H 0.163 0.837 38 H 0.172 0.828 39 H 0.163 0.837 40 H 0.168 0.832 41 H 0.032 0.968 42 H 0.028 0.972 43 H 0.076 0.924 44 H 0.184 0.816 45 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -16.074 18.061 -16.781 29.431 hybrid contribution 1.256 -0.292 -0.342 1.334 sum -14.818 17.769 -17.124 28.785 Atomic orbital electron populations 1.22116 0.93006 1.02182 1.04111 1.21270 0.95439 0.93915 0.87324 1.22091 1.00986 0.94069 1.04079 1.47953 1.48993 1.26607 1.09203 1.22810 1.03495 1.01308 0.82442 1.18504 0.78498 0.80715 0.88105 1.90768 1.56866 1.69233 1.28457 1.20292 1.00445 0.94715 0.94059 1.21417 0.97516 0.93166 0.99078 1.21106 0.92993 1.01173 0.90410 1.30653 1.16354 1.07666 1.17542 1.05339 0.78752 0.73738 0.74239 1.93484 1.79705 1.70884 1.52531 1.93484 1.79338 1.38727 1.85736 1.30089 1.19225 1.11529 1.08788 1.18887 0.97661 0.94523 0.90999 1.21477 0.91258 1.35386 1.09650 0.90585 1.26075 1.04520 0.94656 0.94887 1.70082 1.38058 1.36137 1.12898 0.85402 0.78393 0.78857 0.77834 1.18747 1.21067 1.19005 1.21301 0.92313 0.91305 1.00537 1.22324 0.97387 1.02882 0.90236 0.90453 0.89731 0.93579 0.90527 0.90450 0.93460 0.89905 0.89371 0.88563 0.89001 0.83687 0.82780 0.83651 0.83158 0.96850 0.97179 0.92408 0.81573 0.79626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.34 9.16 71.98 0.66 -0.68 16 2 C 0.12 1.56 3.25 44.99 0.15 1.71 16 3 C -0.15 -1.30 9.19 71.98 0.66 -0.63 16 4 N -0.60 -8.78 2.76 -826.01 -2.28 -11.06 16 5 C 0.04 0.30 7.88 127.77 1.01 1.31 16 6 C 0.55 12.24 7.44 86.79 0.65 12.89 16 7 O -0.57 -17.01 16.09 -3.88 -0.06 -17.07 16 8 C -0.09 -1.95 5.47 -20.09 -0.11 -2.06 16 9 C -0.09 -2.14 9.60 22.53 0.22 -1.92 16 10 C -0.04 -0.95 9.45 22.23 0.21 -0.74 16 11 C -0.63 -16.58 5.66 22.33 0.13 -16.46 16 12 S 2.49 84.74 5.15 -56.49 -0.29 84.45 16 13 O -0.97 -37.18 17.10 -127.65 -2.18 -39.36 16 14 O -0.98 -39.07 17.11 -127.65 -2.18 -41.25 16 15 C -0.56 -20.21 5.92 71.98 0.43 -19.79 16 16 C 0.02 0.90 4.98 29.85 0.15 1.05 16 17 C -0.54 -29.14 9.11 25.60 0.23 -28.91 16 18 H 0.08 3.79 7.74 -2.91 -0.02 3.76 16 19 C 0.00 -0.15 5.46 84.66 0.46 0.31 16 20 N -0.93 -55.82 13.29 21.45 0.28 -55.54 16 21 Si 0.97 42.74 29.54 68.60 2.03 44.77 16 22 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 23 H -0.29 -12.42 7.11 99.48 0.71 -11.72 16 24 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 25 C -0.04 -0.75 9.45 22.23 0.21 -0.54 16 26 C -0.11 -1.86 7.44 22.53 0.17 -1.69 16 27 H 0.08 0.42 6.69 -2.38 -0.02 0.40 16 28 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 29 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.08 1.40 6.91 -2.38 -0.02 1.38 16 31 H 0.08 0.40 7.67 -2.39 -0.02 0.38 16 32 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.08 0.49 8.14 -2.38 -0.02 0.48 16 34 H 0.09 0.32 7.44 -2.39 -0.02 0.30 16 35 H 0.10 0.36 6.45 -2.38 -0.02 0.35 16 36 H 0.09 0.79 4.72 -2.39 -0.01 0.78 16 37 H 0.15 3.16 7.96 -2.91 -0.02 3.13 16 38 H 0.15 3.61 7.56 -2.91 -0.02 3.58 16 39 H 0.15 4.56 8.14 -2.39 -0.02 4.54 16 40 H 0.15 4.54 8.14 -2.39 -0.02 4.53 16 41 H 0.01 0.71 8.14 -2.39 -0.02 0.69 16 42 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 43 H 0.27 15.02 8.31 -92.71 -0.77 14.25 16 44 H 0.17 2.93 7.55 -2.91 -0.02 2.91 16 45 H 0.19 1.72 4.80 -2.91 -0.01 1.71 16 Total: -1.00 -79.95 380.77 1.52 -78.44 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: 1.00 Total: 12.79 kcal Atomic # 6 Polarization: -61.38 SS G_CDS: 5.21 Total: -56.17 kcal Atomic # 7 Polarization: -64.60 SS G_CDS: -2.00 Total: -66.60 kcal Atomic # 8 Polarization: -93.25 SS G_CDS: -4.43 Total: -97.68 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.77 kcal Atomic # 16 Polarization: 84.74 SS G_CDS: -0.29 Total: 84.45 kcal Total: -79.95 1.52 -78.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130041143.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.014 kcal (2) G-P(sol) polarization free energy of solvation -79.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds