Wall clock time and date at job start Tue Mar 31 2020 22:20:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.46959 * 2 1 4 4 N 1.46500 * 109.46840 * 180.02562 * 3 2 1 5 5 C 1.46499 * 120.00134 * 269.99427 * 4 3 2 6 6 C 1.34778 * 119.99903 * 90.00725 * 4 3 2 7 7 O 1.21546 * 120.00104 * 4.28870 * 6 4 3 8 8 C 1.47848 * 119.99913 * 184.29896 * 6 4 3 9 9 C 1.39569 * 120.14531 * 148.10370 * 8 6 4 10 10 C 1.37958 * 119.85318 * 180.02562 * 9 8 6 11 11 C 1.38354 * 120.14533 * 359.97438 * 10 9 8 12 12 S 1.76197 * 119.85410 * 179.97438 * 11 10 9 13 13 O 1.42103 * 104.27808 * 206.07600 * 12 11 10 14 14 O 1.42099 * 104.27879 * 333.92959 * 12 11 10 15 15 C 1.81399 * 104.45137 * 90.00090 * 12 11 10 16 16 C 1.53004 * 109.47203 * 179.97438 * 15 12 11 17 17 C 1.50702 * 109.46912 * 179.97438 * 16 15 12 18 18 H 1.08001 * 119.99966 * 0.02562 * 17 16 15 19 19 C 1.37879 * 119.99976 * 179.97438 * 17 16 15 20 20 N 1.31516 * 119.99728 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 119.99966 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.46938 * 60.00228 * 21 19 17 23 23 H 1.48503 * 109.47003 * 180.02562 * 21 19 17 24 24 H 1.48494 * 109.47204 * 300.00513 * 21 19 17 25 25 C 1.38359 * 120.29261 * 0.27489 * 11 10 9 26 26 C 1.37964 * 120.14206 * 359.45000 * 25 11 10 27 27 H 1.09000 * 109.47101 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46608 * 299.99736 * 1 2 3 29 29 H 1.08995 * 109.47706 * 59.99415 * 1 2 3 30 30 H 1.09000 * 109.47088 * 240.00482 * 2 1 3 31 31 H 1.08994 * 109.47521 * 120.00069 * 2 1 3 32 32 H 1.09000 * 109.46827 * 60.00322 * 3 2 1 33 33 H 1.09003 * 109.47042 * 300.00262 * 3 2 1 34 34 H 1.08992 * 109.47557 * 274.48722 * 5 4 3 35 35 H 1.09003 * 109.46469 * 34.49045 * 5 4 3 36 36 H 1.09001 * 109.47054 * 154.48133 * 5 4 3 37 37 H 1.08001 * 120.07485 * 0.02562 * 9 8 6 38 38 H 1.08006 * 119.92728 * 179.97438 * 10 9 8 39 39 H 1.08997 * 109.47101 * 300.00226 * 15 12 11 40 40 H 1.08996 * 109.46888 * 60.00150 * 15 12 11 41 41 H 1.09000 * 109.47094 * 299.99714 * 16 15 12 42 42 H 1.08996 * 109.46991 * 60.00317 * 16 15 12 43 43 H 0.96996 * 119.99970 * 179.97438 * 20 19 17 44 44 H 1.07998 * 119.92818 * 179.70051 * 25 11 10 45 45 H 1.08003 * 120.06997 * 180.25669 * 26 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.2381 1.4425 1.2678 6 6 4.1784 1.4428 -1.1681 7 8 3.5727 1.5219 -2.2190 8 6 5.6537 1.3468 -1.1706 9 6 6.3125 0.7041 -2.2198 10 6 7.6894 0.6175 -2.2157 11 6 8.4170 1.1666 -1.1749 12 16 10.1752 1.0510 -1.1771 13 8 10.5324 1.1162 0.1968 14 8 10.4492 -0.1089 -1.9510 15 6 10.7259 2.5430 -2.0495 16 6 12.2543 2.5593 -2.1174 17 6 12.7117 3.7986 -2.8427 18 1 11.9849 4.5041 -3.2175 19 6 14.0580 4.0321 -3.0270 20 7 14.9429 3.1731 -2.5703 21 14 14.6249 5.5678 -3.9268 22 1 14.1482 6.7718 -3.1998 23 1 16.1084 5.5838 -3.9925 24 1 14.0688 5.5685 -5.3037 25 6 7.7698 1.8006 -0.1292 26 6 6.3937 1.8990 -0.1239 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3632 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.6766 1.9564 -0.8900 34 1 4.3503 2.4668 1.6227 35 1 3.6864 0.8605 2.0061 36 1 5.2228 0.9997 1.1183 37 1 5.7458 0.2754 -3.0330 38 1 8.2004 0.1200 -3.0268 39 1 10.3169 2.5449 -3.0599 40 1 10.3768 3.4262 -1.5147 41 1 12.6629 2.5578 -1.1068 42 1 12.6037 1.6761 -2.6520 43 1 15.8901 3.3372 -2.7002 44 1 8.3433 2.2229 0.6827 45 1 5.8900 2.3978 0.6909 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000130449939.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:24 Heat of formation + Delta-G solvation = -73.576777 kcal Electronic energy + Delta-G solvation = -26530.026042 eV Core-core repulsion = 22640.385847 eV Total energy + Delta-G solvation = -3889.640194 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.88567 -38.69892 -36.67893 -36.55851 -35.51004 -34.08025 -33.94162 -31.63644 -31.35411 -31.20642 -27.92555 -26.81604 -25.65210 -24.01493 -23.06231 -22.10166 -21.56050 -20.10567 -18.80995 -17.87416 -17.60744 -16.91018 -16.49665 -16.05040 -15.63828 -15.38514 -15.31579 -15.03627 -14.77598 -14.61643 -14.51278 -13.92987 -13.75711 -13.47731 -13.43083 -13.15883 -12.99514 -12.63492 -12.52017 -12.46123 -12.17297 -11.81168 -11.79112 -11.64528 -11.58592 -11.32787 -11.14947 -11.08937 -11.01127 -10.81738 -10.45590 -10.41968 -10.25716 -9.77156 -9.54210 -9.28615 -9.17689 -9.11932 -8.52324 -6.14894 -4.20835 0.17655 0.56024 1.04459 2.29828 2.48974 3.23870 3.26547 3.31603 3.32935 3.35167 4.00200 4.24290 4.29130 4.36803 4.49123 4.49989 4.53496 4.67431 4.68623 4.82526 4.91691 4.97842 5.05988 5.15662 5.19527 5.20576 5.24018 5.32583 5.34213 5.57476 5.59174 5.63851 5.65136 5.69772 5.76432 5.76788 5.89652 5.94686 6.06878 6.40287 6.50788 6.84291 7.25849 7.31305 7.69719 7.77794 8.13143 8.82265 9.44099 10.95906 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.023525 B = 0.002178 C = 0.002114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.930806 B =12850.835836 C =13239.172026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.141 4.141 3 C 0.114 3.886 4 N -0.611 5.611 5 C 0.054 3.946 6 C 0.558 3.442 7 O -0.528 6.528 8 C -0.091 4.091 9 C -0.085 4.085 10 C -0.030 4.030 11 C -0.633 4.633 12 S 2.471 3.529 13 O -0.943 6.943 14 O -0.943 6.943 15 C -0.562 4.562 16 C 0.026 3.974 17 C -0.522 4.522 18 H 0.062 0.938 19 C 0.059 3.941 20 N -0.889 5.889 21 Si 0.901 3.099 22 H -0.275 1.275 23 H -0.285 1.285 24 H -0.275 1.275 25 C -0.033 4.033 26 C -0.127 4.127 27 H 0.058 0.942 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.079 0.921 33 H 0.087 0.913 34 H 0.065 0.935 35 H 0.072 0.928 36 H 0.095 0.905 37 H 0.140 0.860 38 H 0.151 0.849 39 H 0.125 0.875 40 H 0.125 0.875 41 H 0.036 0.964 42 H 0.036 0.964 43 H 0.266 0.734 44 H 0.150 0.850 45 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.643 -4.093 8.281 27.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.179 4.179 3 C -0.008 4.008 4 N -0.344 5.344 5 C -0.088 4.088 6 C 0.346 3.654 7 O -0.404 6.404 8 C -0.094 4.094 9 C -0.105 4.105 10 C -0.048 4.048 11 C -0.716 4.716 12 S 2.653 3.347 13 O -0.941 6.941 14 O -0.940 6.940 15 C -0.696 4.696 16 C -0.013 4.013 17 C -0.562 4.562 18 H 0.080 0.920 19 C -0.144 4.144 20 N -0.527 5.527 21 Si 0.728 3.272 22 H -0.201 1.201 23 H -0.211 1.211 24 H -0.201 1.201 25 C -0.051 4.051 26 C -0.146 4.146 27 H 0.077 0.923 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.098 0.902 33 H 0.105 0.895 34 H 0.084 0.916 35 H 0.091 0.909 36 H 0.113 0.887 37 H 0.158 0.842 38 H 0.168 0.832 39 H 0.143 0.857 40 H 0.143 0.857 41 H 0.055 0.945 42 H 0.055 0.945 43 H 0.076 0.924 44 H 0.168 0.832 45 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -25.387 -4.793 8.138 27.087 hybrid contribution -0.312 1.347 -0.633 1.521 sum -25.699 -3.446 7.505 26.993 Atomic orbital electron populations 1.21686 0.94858 1.02117 1.02022 1.21893 0.96414 0.96964 1.02662 1.21590 0.78311 0.97364 1.03580 1.47744 1.07020 1.73485 1.06159 1.22563 0.98821 1.02187 0.85227 1.18426 0.87106 0.76284 0.83542 1.90792 1.69670 1.49036 1.30950 1.20114 0.92735 1.00231 0.96352 1.21313 0.94370 0.97642 0.97149 1.21023 0.93801 0.93736 0.96270 1.31332 1.28209 1.09649 1.02424 1.06489 0.73317 0.78746 0.76100 1.93526 1.81158 1.87668 1.31708 1.93532 1.82725 1.45622 1.72125 1.30193 1.11151 1.15799 1.12458 1.19039 0.82788 0.99991 0.99437 1.20949 0.91921 1.06031 1.37259 0.91971 1.25058 0.96722 0.97000 0.95620 1.69940 1.01772 1.35704 1.45296 0.86516 0.77612 0.82883 0.80184 1.20071 1.21072 1.20057 1.21001 0.94477 0.93489 0.96154 1.21980 0.94452 1.00089 0.98059 0.92339 0.92576 0.92360 0.91507 0.91802 0.90247 0.89480 0.91628 0.90916 0.88691 0.84198 0.83179 0.85655 0.85692 0.94537 0.94533 0.92426 0.83236 0.83268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.78 9.91 37.16 0.37 -0.41 16 2 C -0.14 -0.93 6.26 -26.73 -0.17 -1.10 16 3 C 0.11 0.81 5.46 -4.04 -0.02 0.78 16 4 N -0.61 -5.17 2.87 -182.69 -0.52 -5.70 16 5 C 0.05 0.30 8.80 59.85 0.53 0.83 16 6 C 0.56 6.51 7.44 -12.33 -0.09 6.41 16 7 O -0.53 -7.79 16.31 5.32 0.09 -7.71 16 8 C -0.09 -1.05 5.47 -104.97 -0.57 -1.62 16 9 C -0.09 -1.03 9.60 -39.19 -0.38 -1.40 16 10 C -0.03 -0.38 9.45 -39.64 -0.37 -0.75 16 11 C -0.63 -8.62 5.66 -39.49 -0.22 -8.84 16 12 S 2.47 41.58 5.16 -107.50 -0.55 41.02 16 13 O -0.94 -17.97 17.10 -57.54 -0.98 -18.95 16 14 O -0.94 -18.32 17.11 -57.54 -0.98 -19.30 16 15 C -0.56 -10.09 5.92 37.16 0.22 -9.87 16 16 C 0.03 0.64 4.98 -27.88 -0.14 0.50 16 17 C -0.52 -14.00 9.11 -34.44 -0.31 -14.31 16 18 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 19 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 20 N -0.89 -25.85 13.29 55.43 0.74 -25.11 16 21 Si 0.90 20.84 29.54 -169.99 -5.02 15.82 16 22 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 23 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 24 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 25 C -0.03 -0.38 9.45 -39.64 -0.37 -0.76 16 26 C -0.13 -1.27 7.44 -39.18 -0.29 -1.56 16 27 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.08 0.38 8.07 -51.93 -0.42 -0.04 16 33 H 0.09 0.75 7.36 -51.93 -0.38 0.37 16 34 H 0.07 0.26 7.44 -51.93 -0.39 -0.12 16 35 H 0.07 0.28 8.11 -51.93 -0.42 -0.14 16 36 H 0.09 0.58 4.72 -51.93 -0.25 0.33 16 37 H 0.14 1.53 7.95 -52.49 -0.42 1.11 16 38 H 0.15 1.75 7.56 -52.48 -0.40 1.35 16 39 H 0.13 2.00 8.14 -51.93 -0.42 1.58 16 40 H 0.12 1.96 8.14 -51.93 -0.42 1.54 16 41 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 43 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 44 H 0.15 1.53 7.55 -52.49 -0.40 1.13 16 45 H 0.15 1.01 4.80 -52.48 -0.25 0.76 16 LS Contribution 386.02 15.07 5.82 5.82 Total: -1.00 -35.77 386.02 -10.02 -45.80 By element: Atomic # 1 Polarization: 5.55 SS G_CDS: -6.66 Total: -1.11 kcal Atomic # 6 Polarization: -28.65 SS G_CDS: -1.93 Total: -30.58 kcal Atomic # 7 Polarization: -31.02 SS G_CDS: 0.21 Total: -30.80 kcal Atomic # 8 Polarization: -44.08 SS G_CDS: -1.88 Total: -45.96 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Atomic # 16 Polarization: 41.58 SS G_CDS: -0.55 Total: 41.02 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -35.77 -10.02 -45.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130449939.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.782 kcal (2) G-P(sol) polarization free energy of solvation -35.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds