Wall clock time and date at job start Tue Mar 31 2020 22:20:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.46959 * 2 1 4 4 N 1.46500 * 109.46840 * 180.02562 * 3 2 1 5 5 C 1.46499 * 120.00134 * 269.99427 * 4 3 2 6 6 C 1.34778 * 119.99903 * 90.00725 * 4 3 2 7 7 O 1.21546 * 120.00104 * 4.28870 * 6 4 3 8 8 C 1.47848 * 119.99913 * 184.29896 * 6 4 3 9 9 C 1.39569 * 120.14531 * 148.10370 * 8 6 4 10 10 C 1.37958 * 119.85318 * 180.02562 * 9 8 6 11 11 C 1.38354 * 120.14533 * 359.97438 * 10 9 8 12 12 S 1.76197 * 119.85410 * 179.97438 * 11 10 9 13 13 O 1.42103 * 104.27808 * 206.07600 * 12 11 10 14 14 O 1.42099 * 104.27879 * 333.92959 * 12 11 10 15 15 C 1.81399 * 104.45137 * 90.00090 * 12 11 10 16 16 C 1.53004 * 109.47203 * 179.97438 * 15 12 11 17 17 C 1.50702 * 109.46912 * 179.97438 * 16 15 12 18 18 H 1.08001 * 119.99966 * 0.02562 * 17 16 15 19 19 C 1.37879 * 119.99976 * 179.97438 * 17 16 15 20 20 N 1.31516 * 119.99728 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 119.99966 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.46938 * 60.00228 * 21 19 17 23 23 H 1.48503 * 109.47003 * 180.02562 * 21 19 17 24 24 H 1.48494 * 109.47204 * 300.00513 * 21 19 17 25 25 C 1.38359 * 120.29261 * 0.27489 * 11 10 9 26 26 C 1.37964 * 120.14206 * 359.45000 * 25 11 10 27 27 H 1.09000 * 109.47101 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46608 * 299.99736 * 1 2 3 29 29 H 1.08995 * 109.47706 * 59.99415 * 1 2 3 30 30 H 1.09000 * 109.47088 * 240.00482 * 2 1 3 31 31 H 1.08994 * 109.47521 * 120.00069 * 2 1 3 32 32 H 1.09000 * 109.46827 * 60.00322 * 3 2 1 33 33 H 1.09003 * 109.47042 * 300.00262 * 3 2 1 34 34 H 1.08992 * 109.47557 * 274.48722 * 5 4 3 35 35 H 1.09003 * 109.46469 * 34.49045 * 5 4 3 36 36 H 1.09001 * 109.47054 * 154.48133 * 5 4 3 37 37 H 1.08001 * 120.07485 * 0.02562 * 9 8 6 38 38 H 1.08006 * 119.92728 * 179.97438 * 10 9 8 39 39 H 1.08997 * 109.47101 * 300.00226 * 15 12 11 40 40 H 1.08996 * 109.46888 * 60.00150 * 15 12 11 41 41 H 1.09000 * 109.47094 * 299.99714 * 16 15 12 42 42 H 1.08996 * 109.46991 * 60.00317 * 16 15 12 43 43 H 0.96996 * 119.99970 * 179.97438 * 20 19 17 44 44 H 1.07998 * 119.92818 * 179.70051 * 25 11 10 45 45 H 1.08003 * 120.06997 * 180.25669 * 26 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.2381 1.4425 1.2678 6 6 4.1784 1.4428 -1.1681 7 8 3.5727 1.5219 -2.2190 8 6 5.6537 1.3468 -1.1706 9 6 6.3125 0.7041 -2.2198 10 6 7.6894 0.6175 -2.2157 11 6 8.4170 1.1666 -1.1749 12 16 10.1752 1.0510 -1.1771 13 8 10.5324 1.1162 0.1968 14 8 10.4492 -0.1089 -1.9510 15 6 10.7259 2.5430 -2.0495 16 6 12.2543 2.5593 -2.1174 17 6 12.7117 3.7986 -2.8427 18 1 11.9849 4.5041 -3.2175 19 6 14.0580 4.0321 -3.0270 20 7 14.9429 3.1731 -2.5703 21 14 14.6249 5.5678 -3.9268 22 1 14.1482 6.7718 -3.1998 23 1 16.1084 5.5838 -3.9925 24 1 14.0688 5.5685 -5.3037 25 6 7.7698 1.8006 -0.1292 26 6 6.3937 1.8990 -0.1239 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3632 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.6766 1.9564 -0.8900 34 1 4.3503 2.4668 1.6227 35 1 3.6864 0.8605 2.0061 36 1 5.2228 0.9997 1.1183 37 1 5.7458 0.2754 -3.0330 38 1 8.2004 0.1200 -3.0268 39 1 10.3169 2.5449 -3.0599 40 1 10.3768 3.4262 -1.5147 41 1 12.6629 2.5578 -1.1068 42 1 12.6037 1.6761 -2.6520 43 1 15.8901 3.3372 -2.7002 44 1 8.3433 2.2229 0.6827 45 1 5.8900 2.3978 0.6909 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000130449939.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:23 Heat of formation + Delta-G solvation = -97.462228 kcal Electronic energy + Delta-G solvation = -26531.061792 eV Core-core repulsion = 22640.385847 eV Total energy + Delta-G solvation = -3890.675945 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.71517 -39.59635 -38.13760 -37.30415 -36.97789 -35.87162 -34.68649 -33.11517 -32.50901 -32.24639 -28.43691 -27.67624 -27.41024 -24.90688 -23.95225 -23.42858 -22.63457 -20.86909 -20.09513 -19.14582 -18.59935 -18.26599 -17.68333 -17.03540 -16.92118 -16.61682 -16.51086 -16.00569 -15.90983 -15.73391 -15.28562 -15.08931 -14.75527 -14.49477 -14.42354 -14.12364 -13.98990 -13.83156 -13.69843 -13.23186 -13.14519 -13.04228 -12.94359 -12.88852 -12.78697 -12.74485 -12.27197 -12.20388 -12.19658 -12.14787 -12.02585 -11.66990 -11.65869 -11.23726 -10.97387 -10.60922 -10.47809 -10.14512 -9.79757 -8.23464 -6.36860 -0.97223 -0.64252 0.14222 1.40742 1.43319 1.46062 1.54133 1.79419 2.00545 2.36629 2.41132 2.91741 3.10119 3.14685 3.24595 3.64030 3.75268 3.97300 4.01175 4.04838 4.05790 4.11765 4.19976 4.31034 4.36314 4.44642 4.52413 4.56925 4.68950 4.78400 4.79436 4.85664 4.86854 4.89705 4.93755 5.02770 5.13718 5.18365 5.28013 5.31138 5.32335 5.47497 5.59408 5.71160 6.08570 6.13722 6.76507 6.89040 7.32960 8.88282 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.023525 B = 0.002178 C = 0.002114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.930806 B =12850.835836 C =13239.172026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.136 4.136 3 C 0.110 3.890 4 N -0.603 5.603 5 C 0.043 3.957 6 C 0.552 3.448 7 O -0.570 6.570 8 C -0.093 4.093 9 C -0.093 4.093 10 C -0.038 4.038 11 C -0.634 4.634 12 S 2.494 3.506 13 O -0.969 6.969 14 O -0.976 6.976 15 C -0.564 4.564 16 C 0.017 3.983 17 C -0.539 4.539 18 H 0.076 0.924 19 C -0.002 4.002 20 N -0.932 5.932 21 Si 0.971 3.029 22 H -0.263 1.263 23 H -0.285 1.285 24 H -0.266 1.266 25 C -0.036 4.036 26 C -0.110 4.110 27 H 0.060 0.940 28 H 0.072 0.928 29 H 0.051 0.949 30 H 0.038 0.962 31 H 0.074 0.926 32 H 0.111 0.889 33 H 0.067 0.933 34 H 0.091 0.909 35 H 0.096 0.904 36 H 0.090 0.910 37 H 0.145 0.855 38 H 0.154 0.846 39 H 0.145 0.855 40 H 0.150 0.850 41 H 0.013 0.987 42 H 0.010 0.990 43 H 0.267 0.733 44 H 0.167 0.833 45 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.111 -2.495 9.721 29.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.175 4.175 3 C -0.011 4.011 4 N -0.334 5.334 5 C -0.098 4.098 6 C 0.341 3.659 7 O -0.450 6.450 8 C -0.096 4.096 9 C -0.112 4.112 10 C -0.057 4.057 11 C -0.722 4.722 12 S 2.680 3.320 13 O -0.966 6.966 14 O -0.973 6.973 15 C -0.696 4.696 16 C -0.021 4.021 17 C -0.578 4.578 18 H 0.094 0.906 19 C -0.201 4.201 20 N -0.571 5.571 21 Si 0.795 3.205 22 H -0.188 1.188 23 H -0.211 1.211 24 H -0.190 1.190 25 C -0.055 4.055 26 C -0.128 4.128 27 H 0.079 0.921 28 H 0.091 0.909 29 H 0.070 0.930 30 H 0.057 0.943 31 H 0.093 0.907 32 H 0.130 0.870 33 H 0.086 0.914 34 H 0.109 0.891 35 H 0.114 0.886 36 H 0.109 0.891 37 H 0.162 0.838 38 H 0.172 0.828 39 H 0.163 0.837 40 H 0.168 0.832 41 H 0.032 0.968 42 H 0.028 0.972 43 H 0.076 0.924 44 H 0.184 0.816 45 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -27.815 -3.190 9.611 29.601 hybrid contribution 0.279 0.792 -0.988 1.297 sum -27.537 -2.397 8.622 28.954 Atomic orbital electron populations 1.21670 0.93758 1.02455 1.02531 1.21844 0.97364 0.96491 1.01798 1.21742 0.77497 0.97705 1.04180 1.47885 1.07742 1.71500 1.06269 1.22842 0.98620 1.04206 0.84129 1.18505 0.87107 0.76332 0.83990 1.90774 1.70279 1.51364 1.32590 1.20303 0.93045 0.99772 0.96498 1.21412 0.94024 0.97977 0.97812 1.21104 0.94215 0.94026 0.96365 1.30655 1.25079 1.12228 1.04244 1.05324 0.74452 0.77404 0.74825 1.93484 1.82704 1.87678 1.32730 1.93485 1.84301 1.46827 1.72692 1.30084 1.06686 1.18166 1.14670 1.18891 0.87401 0.98360 0.97453 1.21484 0.92526 1.06891 1.36924 0.90586 1.26069 0.97080 1.00380 0.96549 1.70086 1.02083 1.37948 1.47021 0.85402 0.76954 0.78951 0.79174 1.18764 1.21064 1.19032 1.21309 0.95439 0.92893 0.95831 1.22341 0.93533 0.98743 0.98202 0.92130 0.90874 0.93032 0.94268 0.90689 0.87046 0.91414 0.89106 0.88588 0.89149 0.83759 0.82812 0.83667 0.83163 0.96834 0.97172 0.92429 0.81551 0.79505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.91 71.98 0.71 -0.56 16 2 C -0.14 -1.58 6.26 30.60 0.19 -1.39 16 3 C 0.11 1.31 5.46 86.38 0.47 1.78 16 4 N -0.60 -8.57 2.87 -850.19 -2.44 -11.01 16 5 C 0.04 0.29 8.80 127.77 1.12 1.41 16 6 C 0.55 12.06 7.44 86.79 0.65 12.70 16 7 O -0.57 -16.76 16.31 -3.86 -0.06 -16.82 16 8 C -0.09 -1.96 5.47 -20.09 -0.11 -2.07 16 9 C -0.09 -2.15 9.60 22.52 0.22 -1.93 16 10 C -0.04 -0.95 9.45 22.23 0.21 -0.74 16 11 C -0.63 -16.51 5.66 22.33 0.13 -16.38 16 12 S 2.49 84.42 5.16 -56.49 -0.29 84.13 16 13 O -0.97 -37.03 17.10 -127.65 -2.18 -39.22 16 14 O -0.98 -38.99 17.11 -127.65 -2.18 -41.18 16 15 C -0.56 -20.15 5.92 71.98 0.43 -19.72 16 16 C 0.02 0.88 4.98 29.85 0.15 1.03 16 17 C -0.54 -29.15 9.11 25.60 0.23 -28.91 16 18 H 0.08 3.78 7.74 -2.91 -0.02 3.76 16 19 C 0.00 -0.12 5.46 84.65 0.46 0.34 16 20 N -0.93 -55.72 13.29 21.45 0.28 -55.44 16 21 Si 0.97 42.71 29.54 68.60 2.03 44.73 16 22 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 23 H -0.29 -12.41 7.11 99.48 0.71 -11.71 16 24 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 25 C -0.04 -0.75 9.45 22.23 0.21 -0.54 16 26 C -0.11 -1.83 7.44 22.53 0.17 -1.66 16 27 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 28 H 0.07 0.40 8.14 -2.39 -0.02 0.38 16 29 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.11 0.63 8.07 -2.39 -0.02 0.61 16 33 H 0.07 1.10 7.36 -2.39 -0.02 1.08 16 34 H 0.09 0.23 7.44 -2.39 -0.02 0.21 16 35 H 0.10 0.28 8.11 -2.39 -0.02 0.26 16 36 H 0.09 0.73 4.72 -2.39 -0.01 0.72 16 37 H 0.14 3.15 7.95 -2.91 -0.02 3.13 16 38 H 0.15 3.60 7.56 -2.91 -0.02 3.58 16 39 H 0.15 4.55 8.14 -2.39 -0.02 4.53 16 40 H 0.15 4.53 8.14 -2.39 -0.02 4.51 16 41 H 0.01 0.72 8.14 -2.39 -0.02 0.70 16 42 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 43 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 44 H 0.17 2.90 7.55 -2.91 -0.02 2.88 16 45 H 0.19 1.64 4.80 -2.91 -0.01 1.62 16 Total: -1.00 -80.21 386.02 1.37 -78.84 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: 0.99 Total: 12.61 kcal Atomic # 6 Polarization: -61.88 SS G_CDS: 5.24 Total: -56.65 kcal Atomic # 7 Polarization: -64.29 SS G_CDS: -2.16 Total: -66.45 kcal Atomic # 8 Polarization: -92.79 SS G_CDS: -4.43 Total: -97.22 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.73 kcal Atomic # 16 Polarization: 84.42 SS G_CDS: -0.29 Total: 84.13 kcal Total: -80.21 1.37 -78.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130449939.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.627 kcal (2) G-P(sol) polarization free energy of solvation -80.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds