Wall clock time and date at job start Tue Mar 31 2020 22:23:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81405 * 1 3 3 C 1.81393 * 102.99965 * 2 1 4 4 C 1.52996 * 109.47053 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.47091 * 55.00165 * 4 3 2 6 6 O 1.42895 * 109.47330 * 295.00184 * 4 3 2 7 7 C 1.53007 * 109.47504 * 175.00165 * 4 3 2 8 8 N 1.46500 * 109.47409 * 185.00261 * 7 4 3 9 9 C 1.34775 * 119.99558 * 179.97438 * 8 7 4 10 10 O 1.21275 * 120.00389 * 0.02562 * 9 8 7 11 11 C 1.50701 * 119.99371 * 180.02562 * 9 8 7 12 12 C 1.50707 * 109.46729 * 180.02562 * 11 9 8 13 13 C 1.38297 * 119.92744 * 269.72213 * 12 11 9 14 14 C 1.38105 * 120.06607 * 179.72702 * 13 12 11 15 15 C 1.38878 * 119.92733 * 0.57125 * 14 13 12 16 16 O 1.35754 * 120.06531 * 179.68301 * 15 14 13 17 17 C 1.34827 * 116.99729 * 174.48881 * 16 15 14 18 18 H 1.07993 * 120.00385 * 5.05160 * 17 16 15 19 19 C 1.38657 * 119.99599 * 185.05711 * 17 16 15 20 20 N 1.31560 * 119.99519 * 179.97438 * 19 17 16 21 21 Si 1.86801 * 120.00396 * 359.97438 * 19 17 16 22 22 H 1.48497 * 109.47050 * 89.99957 * 21 19 17 23 23 H 1.48496 * 109.47373 * 210.00362 * 21 19 17 24 24 H 1.48503 * 109.46696 * 329.99939 * 21 19 17 25 25 C 1.38876 * 119.86588 * 359.70706 * 15 14 13 26 26 C 1.38098 * 119.93103 * 359.97438 * 25 15 14 27 27 H 1.09005 * 109.47137 * 299.99821 * 1 2 3 28 28 H 1.08996 * 109.46966 * 59.99693 * 1 2 3 29 29 H 1.09003 * 109.47219 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47510 * 60.00229 * 3 2 1 31 31 H 1.08998 * 109.47353 * 300.00210 * 3 2 1 32 32 H 1.08994 * 109.47369 * 299.99794 * 5 4 3 33 33 H 1.08999 * 109.47386 * 59.99982 * 5 4 3 34 34 H 1.09005 * 109.47469 * 179.97438 * 5 4 3 35 35 H 0.96699 * 113.99874 * 299.99476 * 6 4 3 36 36 H 1.09006 * 109.46533 * 304.99938 * 7 4 3 37 37 H 1.09001 * 109.47039 * 64.99525 * 7 4 3 38 38 H 0.96996 * 119.99680 * 359.97438 * 8 7 4 39 39 H 1.09006 * 109.47096 * 299.99546 * 11 9 8 40 40 H 1.08993 * 109.47381 * 59.99925 * 11 9 8 41 41 H 1.08001 * 119.96790 * 359.97438 * 13 12 11 42 42 H 1.08004 * 120.03368 * 180.27248 * 14 13 12 43 43 H 0.97003 * 119.99642 * 179.97438 * 20 19 17 44 44 H 1.08001 * 120.03439 * 179.97438 * 25 15 14 45 45 H 1.07991 * 119.96803 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7674 0.0000 4 6 3.7423 1.9399 -0.0006 5 6 4.3418 1.1754 -1.1826 6 8 4.2803 1.4277 1.2200 7 6 4.0872 3.4253 -0.1263 8 7 5.5388 3.5811 -0.2471 9 6 6.0765 4.8107 -0.3708 10 8 5.3587 5.7882 -0.3817 11 6 7.5698 4.9710 -0.4956 12 6 7.9093 6.4341 -0.6193 13 6 7.9793 7.0229 -1.8687 14 6 8.2847 8.3647 -1.9850 15 6 8.5333 9.1200 -0.8464 16 8 8.8401 10.4377 -0.9579 17 6 8.9572 11.1380 0.1883 18 1 8.8893 10.6317 1.1398 19 6 9.1647 12.5083 0.1453 20 7 9.2785 13.1916 1.2638 21 14 9.2828 13.3840 -1.5004 22 1 7.9299 13.8261 -1.9240 23 1 10.1715 14.5664 -1.3694 24 1 9.8408 12.4555 -2.5162 25 6 8.4679 8.5244 0.4065 26 6 8.1555 7.1837 0.5166 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 1.8032 2.2371 0.8900 31 1 1.8031 2.2371 -0.8899 32 1 4.0962 0.1172 -1.0931 33 1 3.9314 1.5660 -2.1138 34 1 5.4248 1.2985 -1.1834 35 1 3.9438 1.8669 2.0131 36 1 3.6026 3.8370 -1.0117 37 1 3.7371 3.9557 0.7592 38 1 6.1129 2.7993 -0.2380 39 1 8.0546 4.5594 0.3897 40 1 7.9194 4.4403 -1.3811 41 1 7.7911 6.4338 -2.7540 42 1 8.3349 8.8251 -2.9607 43 1 9.4241 14.1502 1.2337 44 1 8.6611 9.1091 1.2937 45 1 8.1041 6.7201 1.4906 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000150968158.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:10 Heat of formation + Delta-G solvation = -91.373040 kcal Electronic energy + Delta-G solvation = -25996.230593 eV Core-core repulsion = 22105.818695 eV Total energy + Delta-G solvation = -3890.411898 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.12548 -39.15053 -38.43624 -36.61753 -34.50299 -32.67933 -32.43076 -31.47123 -30.19976 -29.59140 -27.91263 -27.70207 -25.99230 -24.68337 -22.06566 -21.19658 -20.97560 -20.04808 -17.97920 -17.83821 -17.23812 -17.06118 -16.20574 -16.06187 -15.77964 -15.31746 -15.09219 -14.72632 -14.54294 -14.22247 -14.13583 -13.93487 -13.77426 -13.59610 -13.40447 -13.33367 -12.91994 -12.75647 -12.61888 -12.52436 -12.37901 -12.23996 -12.16723 -11.60131 -11.56853 -11.27418 -10.92627 -10.73086 -10.65208 -10.63839 -10.35926 -10.12655 -9.76069 -9.34860 -9.21387 -8.82720 -8.19656 -8.10783 -7.26903 -6.38370 -4.04627 1.10460 2.07253 2.19097 2.19771 2.73726 3.09648 3.24493 3.28510 3.42814 3.71149 4.07879 4.19994 4.22637 4.26716 4.50691 4.63020 4.65436 4.73881 4.88794 4.91062 4.96622 5.14359 5.18502 5.20647 5.22570 5.27918 5.39259 5.42046 5.47183 5.63813 5.70027 5.77091 5.79366 6.17088 6.26271 6.37074 6.60564 6.83487 7.06001 7.12151 7.26114 7.34618 7.42001 7.65791 7.84215 8.07629 8.28270 8.97095 9.60055 10.69365 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.028478 B = 0.001729 C = 0.001711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.964440 B =16193.143981 C =16363.804528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 S -0.227 6.227 3 C -0.120 4.120 4 C 0.140 3.860 5 C -0.142 4.142 6 O -0.544 6.544 7 C 0.100 3.900 8 N -0.733 5.733 9 C 0.509 3.491 10 O -0.522 6.522 11 C -0.081 4.081 12 C -0.161 4.161 13 C -0.062 4.062 14 C -0.191 4.191 15 C 0.162 3.838 16 O -0.218 6.218 17 C -0.388 4.388 18 H 0.106 0.894 19 C 0.063 3.937 20 N -0.880 5.880 21 Si 0.906 3.094 22 H -0.274 1.274 23 H -0.282 1.282 24 H -0.260 1.260 25 C -0.219 4.219 26 C -0.058 4.058 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.101 0.899 30 H 0.087 0.913 31 H 0.093 0.907 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.067 0.933 35 H 0.379 0.621 36 H 0.076 0.924 37 H 0.070 0.930 38 H 0.402 0.598 39 H 0.094 0.906 40 H 0.093 0.907 41 H 0.110 0.890 42 H 0.116 0.884 43 H 0.279 0.721 44 H 0.133 0.867 45 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.328 -27.720 -3.195 30.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.303 4.303 2 S -0.001 6.001 3 C -0.269 4.269 4 C 0.097 3.903 5 C -0.199 4.199 6 O -0.350 6.350 7 C -0.026 4.026 8 N -0.388 5.388 9 C 0.296 3.704 10 O -0.396 6.396 11 C -0.121 4.121 12 C -0.162 4.162 13 C -0.080 4.080 14 C -0.210 4.210 15 C 0.110 3.890 16 O -0.123 6.123 17 C -0.464 4.464 18 H 0.124 0.876 19 C -0.140 4.140 20 N -0.519 5.519 21 Si 0.731 3.269 22 H -0.199 1.199 23 H -0.208 1.208 24 H -0.184 1.184 25 C -0.239 4.239 26 C -0.076 4.076 27 H 0.094 0.906 28 H 0.095 0.905 29 H 0.120 0.880 30 H 0.105 0.895 31 H 0.112 0.888 32 H 0.097 0.903 33 H 0.094 0.906 34 H 0.086 0.914 35 H 0.227 0.773 36 H 0.094 0.906 37 H 0.088 0.912 38 H 0.238 0.762 39 H 0.112 0.888 40 H 0.112 0.888 41 H 0.128 0.872 42 H 0.134 0.866 43 H 0.089 0.911 44 H 0.150 0.850 45 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -12.805 -27.880 -3.703 30.903 hybrid contribution -1.100 1.608 0.037 1.949 sum -13.904 -26.272 -3.666 29.950 Atomic orbital electron populations 1.23479 0.95330 1.06580 1.04905 1.87078 1.05894 1.09132 1.97950 1.24181 1.00059 0.96535 1.06090 1.21116 0.89383 0.92398 0.87354 1.21809 1.01458 1.01483 0.95178 1.86609 1.69947 1.63520 1.14930 1.21887 0.82822 0.94877 1.03041 1.45985 1.07013 1.09052 1.76765 1.21052 0.91394 0.82288 0.75674 1.90751 1.62745 1.38273 1.47824 1.20422 0.91321 0.96395 1.03961 1.18706 1.10281 0.93511 0.93738 1.20402 0.97944 0.93720 0.95977 1.20151 1.10211 0.93857 0.96823 1.19121 0.92157 0.84453 0.93302 1.83570 1.77344 1.16816 1.34606 1.20774 1.50672 0.90767 0.84195 0.87638 1.24467 0.95799 0.95185 0.98590 1.69652 1.47298 1.08570 1.26332 0.86177 0.78618 0.78895 0.83182 1.19914 1.20814 1.18373 1.21226 1.09198 0.95376 0.98053 1.20567 0.96844 0.93465 0.96770 0.90561 0.90534 0.88008 0.89454 0.88814 0.90280 0.90610 0.91419 0.77265 0.90622 0.91193 0.76199 0.88790 0.88848 0.87203 0.86556 0.91107 0.84964 0.87533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.60 10.76 101.05 1.09 0.49 16 2 S -0.23 -1.54 20.42 -107.50 -2.19 -3.73 16 3 C -0.12 -0.67 5.16 37.16 0.19 -0.47 16 4 C 0.14 0.88 0.75 -90.62 -0.07 0.81 16 5 C -0.14 -0.89 8.30 37.16 0.31 -0.59 16 6 O -0.54 -3.76 12.68 -35.23 -0.45 -4.21 16 7 C 0.10 0.81 4.82 -4.04 -0.02 0.79 16 8 N -0.73 -6.67 5.19 -60.29 -0.31 -6.99 16 9 C 0.51 6.68 7.82 -10.99 -0.09 6.59 16 10 O -0.52 -9.48 16.03 5.56 0.09 -9.39 16 11 C -0.08 -0.97 5.83 -29.03 -0.17 -1.14 16 12 C -0.16 -2.73 4.38 -104.57 -0.46 -3.18 16 13 C -0.06 -1.10 9.69 -39.61 -0.38 -1.48 16 14 C -0.19 -3.95 9.99 -39.39 -0.39 -4.34 16 15 C 0.16 3.88 6.65 -39.11 -0.26 3.62 16 16 O -0.22 -5.93 8.59 0.05 0.00 -5.93 16 17 C -0.39 -11.20 9.95 30.89 0.31 -10.90 16 18 H 0.11 3.11 5.44 -52.49 -0.29 2.82 16 19 C 0.06 1.79 5.49 -17.51 -0.10 1.69 16 20 N -0.88 -25.82 13.96 55.48 0.77 -25.04 16 21 Si 0.91 22.09 28.62 -169.99 -4.86 17.22 16 22 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 23 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 24 H -0.26 -6.34 7.11 56.52 0.40 -5.94 16 25 C -0.22 -4.92 9.17 -39.40 -0.36 -5.28 16 26 C -0.06 -1.10 9.69 -39.61 -0.38 -1.48 16 27 H 0.08 0.30 8.14 -51.92 -0.42 -0.12 16 28 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.10 0.38 8.14 -51.92 -0.42 -0.04 16 30 H 0.09 0.42 8.14 -51.92 -0.42 -0.01 16 31 H 0.09 0.47 8.14 -51.92 -0.42 0.05 16 32 H 0.08 0.57 6.72 -51.93 -0.35 0.22 16 33 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.07 0.40 6.57 -51.93 -0.34 0.06 16 35 H 0.38 1.67 9.05 45.56 0.41 2.08 16 36 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.40 2.82 6.99 -40.82 -0.29 2.53 16 39 H 0.09 0.93 8.08 -51.93 -0.42 0.51 16 40 H 0.09 0.87 8.08 -51.93 -0.42 0.45 16 41 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 42 H 0.12 2.23 8.06 -52.48 -0.42 1.81 16 43 H 0.28 7.55 8.31 -40.82 -0.34 7.21 16 44 H 0.13 3.10 5.64 -52.49 -0.30 2.80 16 45 H 0.11 1.74 8.06 -52.49 -0.42 1.32 16 LS Contribution 389.44 15.07 5.87 5.87 Total: -1.00 -34.58 389.44 -7.64 -42.22 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: -5.77 Total: 4.84 kcal Atomic # 6 Polarization: -14.09 SS G_CDS: -0.78 Total: -14.87 kcal Atomic # 7 Polarization: -32.49 SS G_CDS: 0.46 Total: -32.03 kcal Atomic # 8 Polarization: -19.17 SS G_CDS: -0.36 Total: -19.52 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -4.86 Total: 17.22 kcal Atomic # 16 Polarization: -1.54 SS G_CDS: -2.19 Total: -3.73 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -34.58 -7.64 -42.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000150968158.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.153 kcal (2) G-P(sol) polarization free energy of solvation -34.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds