Wall clock time and date at job start Tue Mar 31 2020 22:23:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81405 * 1 3 3 C 1.81393 * 102.99965 * 2 1 4 4 C 1.52996 * 109.47053 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.47091 * 55.00165 * 4 3 2 6 6 O 1.42895 * 109.47330 * 295.00184 * 4 3 2 7 7 C 1.53007 * 109.47504 * 175.00165 * 4 3 2 8 8 N 1.46500 * 109.47409 * 185.00261 * 7 4 3 9 9 C 1.34775 * 119.99558 * 179.97438 * 8 7 4 10 10 O 1.21275 * 120.00389 * 0.02562 * 9 8 7 11 11 C 1.50701 * 119.99371 * 180.02562 * 9 8 7 12 12 C 1.50707 * 109.46729 * 180.02562 * 11 9 8 13 13 C 1.38297 * 119.92744 * 269.72213 * 12 11 9 14 14 C 1.38105 * 120.06607 * 179.72702 * 13 12 11 15 15 C 1.38878 * 119.92733 * 0.57125 * 14 13 12 16 16 O 1.35754 * 120.06531 * 179.68301 * 15 14 13 17 17 C 1.34827 * 116.99729 * 174.48881 * 16 15 14 18 18 H 1.07993 * 120.00385 * 5.05160 * 17 16 15 19 19 C 1.38657 * 119.99599 * 185.05711 * 17 16 15 20 20 N 1.31560 * 119.99519 * 179.97438 * 19 17 16 21 21 Si 1.86801 * 120.00396 * 359.97438 * 19 17 16 22 22 H 1.48497 * 109.47050 * 89.99957 * 21 19 17 23 23 H 1.48496 * 109.47373 * 210.00362 * 21 19 17 24 24 H 1.48503 * 109.46696 * 329.99939 * 21 19 17 25 25 C 1.38876 * 119.86588 * 359.70706 * 15 14 13 26 26 C 1.38098 * 119.93103 * 359.97438 * 25 15 14 27 27 H 1.09005 * 109.47137 * 299.99821 * 1 2 3 28 28 H 1.08996 * 109.46966 * 59.99693 * 1 2 3 29 29 H 1.09003 * 109.47219 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47510 * 60.00229 * 3 2 1 31 31 H 1.08998 * 109.47353 * 300.00210 * 3 2 1 32 32 H 1.08994 * 109.47369 * 299.99794 * 5 4 3 33 33 H 1.08999 * 109.47386 * 59.99982 * 5 4 3 34 34 H 1.09005 * 109.47469 * 179.97438 * 5 4 3 35 35 H 0.96699 * 113.99874 * 299.99476 * 6 4 3 36 36 H 1.09006 * 109.46533 * 304.99938 * 7 4 3 37 37 H 1.09001 * 109.47039 * 64.99525 * 7 4 3 38 38 H 0.96996 * 119.99680 * 359.97438 * 8 7 4 39 39 H 1.09006 * 109.47096 * 299.99546 * 11 9 8 40 40 H 1.08993 * 109.47381 * 59.99925 * 11 9 8 41 41 H 1.08001 * 119.96790 * 359.97438 * 13 12 11 42 42 H 1.08004 * 120.03368 * 180.27248 * 14 13 12 43 43 H 0.97003 * 119.99642 * 179.97438 * 20 19 17 44 44 H 1.08001 * 120.03439 * 179.97438 * 25 15 14 45 45 H 1.07991 * 119.96803 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7674 0.0000 4 6 3.7423 1.9399 -0.0006 5 6 4.3418 1.1754 -1.1826 6 8 4.2803 1.4277 1.2200 7 6 4.0872 3.4253 -0.1263 8 7 5.5388 3.5811 -0.2471 9 6 6.0765 4.8107 -0.3708 10 8 5.3587 5.7882 -0.3817 11 6 7.5698 4.9710 -0.4956 12 6 7.9093 6.4341 -0.6193 13 6 7.9793 7.0229 -1.8687 14 6 8.2847 8.3647 -1.9850 15 6 8.5333 9.1200 -0.8464 16 8 8.8401 10.4377 -0.9579 17 6 8.9572 11.1380 0.1883 18 1 8.8893 10.6317 1.1398 19 6 9.1647 12.5083 0.1453 20 7 9.2785 13.1916 1.2638 21 14 9.2828 13.3840 -1.5004 22 1 7.9299 13.8261 -1.9240 23 1 10.1715 14.5664 -1.3694 24 1 9.8408 12.4555 -2.5162 25 6 8.4679 8.5244 0.4065 26 6 8.1555 7.1837 0.5166 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 1.8032 2.2371 0.8900 31 1 1.8031 2.2371 -0.8899 32 1 4.0962 0.1172 -1.0931 33 1 3.9314 1.5660 -2.1138 34 1 5.4248 1.2985 -1.1834 35 1 3.9438 1.8669 2.0131 36 1 3.6026 3.8370 -1.0117 37 1 3.7371 3.9557 0.7592 38 1 6.1129 2.7993 -0.2380 39 1 8.0546 4.5594 0.3897 40 1 7.9194 4.4403 -1.3811 41 1 7.7911 6.4338 -2.7540 42 1 8.3349 8.8251 -2.9607 43 1 9.4241 14.1502 1.2337 44 1 8.6611 9.1091 1.2937 45 1 8.1041 6.7201 1.4906 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000150968158.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:09 Heat of formation + Delta-G solvation = -116.641392 kcal Electronic energy + Delta-G solvation = -25997.326311 eV Core-core repulsion = 22105.818695 eV Total energy + Delta-G solvation = -3891.507616 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.20453 -40.61419 -39.31912 -38.22738 -35.32641 -34.51946 -33.37287 -32.74278 -31.80109 -29.95099 -28.92306 -28.36075 -27.41085 -26.19218 -23.70544 -22.51196 -21.60108 -21.20015 -19.81924 -19.13037 -18.57091 -17.94083 -16.92704 -16.85246 -16.63001 -16.43023 -16.18100 -15.81315 -15.77917 -15.63317 -15.54961 -15.12242 -14.71457 -14.55739 -14.44513 -14.35017 -14.22669 -14.06883 -13.83135 -13.37037 -13.19333 -13.04908 -12.95539 -12.80179 -12.71051 -12.50777 -12.40289 -12.31589 -12.07662 -11.92954 -11.27947 -11.22773 -10.95582 -10.83975 -10.76941 -10.07741 -9.78335 -8.97712 -8.60443 -8.50589 -6.23085 0.59044 0.60695 0.68799 1.29923 1.34717 1.51113 1.66230 1.74016 2.24670 2.27692 2.78847 3.05865 3.18357 3.25307 3.56600 3.67497 3.73822 3.85984 4.04334 4.15235 4.21183 4.24424 4.32815 4.35016 4.47978 4.50182 4.58282 4.63422 4.71064 4.75523 4.83163 4.89292 4.90760 4.95701 4.99326 5.26079 5.28743 5.37879 5.46590 5.57049 5.74545 5.80123 5.91444 6.25285 6.60364 6.73610 6.83637 7.35436 7.58501 8.61196 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.028478 B = 0.001729 C = 0.001711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.964440 B =16193.143981 C =16363.804528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 S -0.270 6.270 3 C -0.112 4.112 4 C 0.151 3.849 5 C -0.143 4.143 6 O -0.555 6.555 7 C 0.101 3.899 8 N -0.712 5.712 9 C 0.511 3.489 10 O -0.581 6.581 11 C -0.081 4.081 12 C -0.137 4.137 13 C -0.059 4.059 14 C -0.194 4.194 15 C 0.117 3.883 16 O -0.246 6.246 17 C -0.400 4.400 18 H 0.079 0.921 19 C 0.009 3.991 20 N -0.924 5.924 21 Si 0.973 3.027 22 H -0.268 1.268 23 H -0.265 1.265 24 H -0.262 1.262 25 C -0.239 4.239 26 C -0.065 4.065 27 H 0.082 0.918 28 H 0.083 0.917 29 H 0.108 0.892 30 H 0.095 0.905 31 H 0.100 0.900 32 H 0.070 0.930 33 H 0.081 0.919 34 H 0.073 0.927 35 H 0.389 0.611 36 H 0.071 0.929 37 H 0.064 0.936 38 H 0.416 0.584 39 H 0.125 0.875 40 H 0.135 0.865 41 H 0.154 0.846 42 H 0.128 0.872 43 H 0.285 0.715 44 H 0.106 0.894 45 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.071 -30.932 -4.976 34.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.294 4.294 2 S -0.044 6.044 3 C -0.261 4.261 4 C 0.109 3.891 5 C -0.200 4.200 6 O -0.363 6.363 7 C -0.026 4.026 8 N -0.366 5.366 9 C 0.299 3.701 10 O -0.460 6.460 11 C -0.120 4.120 12 C -0.138 4.138 13 C -0.077 4.077 14 C -0.213 4.213 15 C 0.068 3.932 16 O -0.154 6.154 17 C -0.477 4.477 18 H 0.096 0.904 19 C -0.190 4.190 20 N -0.564 5.564 21 Si 0.795 3.205 22 H -0.193 1.193 23 H -0.189 1.189 24 H -0.187 1.187 25 C -0.258 4.258 26 C -0.083 4.083 27 H 0.101 0.899 28 H 0.102 0.898 29 H 0.126 0.874 30 H 0.114 0.886 31 H 0.118 0.882 32 H 0.089 0.911 33 H 0.100 0.900 34 H 0.091 0.909 35 H 0.239 0.761 36 H 0.090 0.910 37 H 0.082 0.918 38 H 0.255 0.745 39 H 0.143 0.857 40 H 0.153 0.847 41 H 0.172 0.828 42 H 0.146 0.854 43 H 0.094 0.906 44 H 0.124 0.876 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -13.549 -31.194 -5.473 34.447 hybrid contribution -0.998 2.173 0.628 2.472 sum -14.547 -29.021 -4.845 32.823 Atomic orbital electron populations 1.23505 0.93049 1.07266 1.05589 1.87207 1.08540 1.10567 1.98071 1.24135 0.99565 0.95515 1.06851 1.20975 0.89847 0.90953 0.87340 1.21829 1.01836 1.00980 0.95388 1.86590 1.70257 1.63874 1.15543 1.21940 0.81976 0.96048 1.02597 1.45790 1.07760 1.08385 1.74711 1.21129 0.91489 0.82505 0.74956 1.90758 1.64001 1.40222 1.50974 1.20557 0.90927 0.92964 1.07534 1.19312 1.05734 0.96134 0.92596 1.20957 0.96003 0.92685 0.98066 1.20516 1.09412 0.95090 0.96248 1.19687 0.94485 0.83861 0.95147 1.83508 1.80190 1.18370 1.33333 1.20709 1.51272 0.91455 0.84233 0.90378 1.25306 0.95603 0.95720 1.02329 1.69737 1.49278 1.09153 1.28277 0.85194 0.79022 0.77899 0.78428 1.19269 1.18915 1.18656 1.21253 1.10579 0.97132 0.96883 1.20911 0.96243 0.92068 0.99120 0.89922 0.89789 0.87361 0.88644 0.88153 0.91125 0.90005 0.90851 0.76094 0.91035 0.91800 0.74532 0.85733 0.84715 0.82802 0.85376 0.90572 0.87639 0.85000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.89 10.76 113.37 1.22 0.33 16 2 S -0.27 -3.23 20.42 -56.49 -1.15 -4.39 16 3 C -0.11 -1.02 5.16 71.98 0.37 -0.64 16 4 C 0.15 1.53 0.75 -10.79 -0.01 1.52 16 5 C -0.14 -1.42 8.30 71.98 0.60 -0.83 16 6 O -0.55 -6.31 12.68 -148.98 -1.89 -8.20 16 7 C 0.10 1.37 4.82 86.38 0.42 1.79 16 8 N -0.71 -10.33 5.19 -463.04 -2.40 -12.73 16 9 C 0.51 11.52 7.82 87.66 0.69 12.21 16 10 O -0.58 -19.85 16.03 -3.02 -0.05 -19.90 16 11 C -0.08 -1.51 5.83 29.10 0.17 -1.34 16 12 C -0.14 -4.17 4.38 -19.83 -0.09 -4.26 16 13 C -0.06 -1.89 9.69 22.25 0.22 -1.68 16 14 C -0.19 -7.82 9.99 22.39 0.22 -7.60 16 15 C 0.12 5.80 6.65 22.58 0.15 5.95 16 16 O -0.25 -14.02 8.59 -22.75 -0.20 -14.21 16 17 C -0.40 -24.58 9.95 67.92 0.68 -23.90 16 18 H 0.08 5.04 5.44 -2.91 -0.02 5.02 16 19 C 0.01 0.51 5.49 84.83 0.47 0.98 16 20 N -0.92 -56.62 13.96 21.61 0.30 -56.32 16 21 Si 0.97 46.85 28.62 68.60 1.96 48.81 16 22 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 23 H -0.26 -11.79 7.11 99.48 0.71 -11.09 16 24 H -0.26 -12.58 7.11 99.48 0.71 -11.87 16 25 C -0.24 -11.20 9.17 22.39 0.21 -10.99 16 26 C -0.07 -2.39 9.69 22.25 0.22 -2.18 16 27 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 28 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 29 H 0.11 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.07 0.87 6.72 -2.39 -0.02 0.86 16 33 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.07 0.62 6.57 -2.38 -0.02 0.60 16 35 H 0.39 2.56 9.05 -74.06 -0.67 1.89 16 36 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 37 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.42 3.94 6.99 -92.71 -0.65 3.30 16 39 H 0.12 1.70 8.08 -2.38 -0.02 1.68 16 40 H 0.13 1.55 8.08 -2.39 -0.02 1.53 16 41 H 0.15 3.60 8.06 -2.91 -0.02 3.58 16 42 H 0.13 4.76 8.06 -2.91 -0.02 4.74 16 43 H 0.28 15.96 8.31 -92.71 -0.77 15.19 16 44 H 0.11 5.41 5.64 -2.91 -0.02 5.40 16 45 H 0.13 4.07 8.06 -2.92 -0.02 4.05 16 Total: -1.00 -80.55 389.44 1.80 -78.75 By element: Atomic # 1 Polarization: 19.12 SS G_CDS: -0.30 Total: 18.83 kcal Atomic # 6 Polarization: -36.16 SS G_CDS: 5.52 Total: -30.64 kcal Atomic # 7 Polarization: -66.95 SS G_CDS: -2.10 Total: -69.05 kcal Atomic # 8 Polarization: -40.17 SS G_CDS: -2.13 Total: -42.31 kcal Atomic # 14 Polarization: 46.85 SS G_CDS: 1.96 Total: 48.81 kcal Atomic # 16 Polarization: -3.23 SS G_CDS: -1.15 Total: -4.39 kcal Total: -80.55 1.80 -78.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000150968158.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.891 kcal (2) G-P(sol) polarization free energy of solvation -80.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds