Wall clock time and date at job start Tue Mar 31 2020 22:23:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81395 * 1 3 3 C 1.81405 * 103.00159 * 2 1 4 4 C 1.52997 * 109.47259 * 180.02562 * 3 2 1 5 5 C 1.52998 * 109.47026 * 304.99808 * 4 3 2 6 6 O 1.42904 * 109.47229 * 64.99944 * 4 3 2 7 7 C 1.52997 * 109.46888 * 185.00225 * 4 3 2 8 8 N 1.46504 * 109.47020 * 180.02562 * 7 4 3 9 9 C 1.34778 * 119.99925 * 179.97438 * 8 7 4 10 10 O 1.21278 * 120.00420 * 359.97438 * 9 8 7 11 11 C 1.50705 * 119.99728 * 179.97438 * 9 8 7 12 12 C 1.50700 * 109.46856 * 180.02562 * 11 9 8 13 13 C 1.38304 * 119.92880 * 269.72705 * 12 11 9 14 14 C 1.38104 * 120.06491 * 179.72687 * 13 12 11 15 15 C 1.38872 * 119.93204 * 0.57188 * 14 13 12 16 16 O 1.35755 * 120.07088 * 179.68076 * 15 14 13 17 17 C 1.34827 * 116.99796 * 174.48622 * 16 15 14 18 18 H 1.07997 * 120.00556 * 5.05953 * 17 16 15 19 19 C 1.38658 * 119.99644 * 185.06047 * 17 16 15 20 20 N 1.31553 * 120.00186 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 119.99915 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.47109 * 60.00033 * 21 19 17 23 23 H 1.48493 * 109.47096 * 179.97438 * 21 19 17 24 24 H 1.48491 * 109.46990 * 299.99945 * 21 19 17 25 25 C 1.38879 * 119.86158 * 359.70536 * 15 14 13 26 26 C 1.38106 * 119.93157 * 359.97438 * 25 15 14 27 27 H 1.08998 * 109.47581 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47025 * 300.00206 * 1 2 3 29 29 H 1.09008 * 109.47249 * 59.99783 * 1 2 3 30 30 H 1.09005 * 109.47033 * 300.00289 * 3 2 1 31 31 H 1.09001 * 109.47027 * 60.00043 * 3 2 1 32 32 H 1.09008 * 109.47083 * 60.00439 * 5 4 3 33 33 H 1.08995 * 109.47517 * 179.97438 * 5 4 3 34 34 H 1.08992 * 109.47563 * 300.00288 * 5 4 3 35 35 H 0.96697 * 113.99606 * 60.00134 * 6 4 3 36 36 H 1.08998 * 109.47478 * 299.99531 * 7 4 3 37 37 H 1.08995 * 109.47597 * 59.99925 * 7 4 3 38 38 H 0.96999 * 120.00048 * 359.97438 * 8 7 4 39 39 H 1.09002 * 109.47550 * 300.00454 * 11 9 8 40 40 H 1.09004 * 109.46584 * 60.00259 * 11 9 8 41 41 H 1.08000 * 119.96637 * 359.97438 * 13 12 11 42 42 H 1.08005 * 120.03328 * 180.27287 * 14 13 12 43 43 H 0.96997 * 120.00127 * 179.97438 * 20 19 17 44 44 H 1.07998 * 120.03635 * 179.97438 * 25 15 14 45 45 H 1.07996 * 119.96407 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7423 1.9400 -0.0006 5 6 4.3428 1.1753 1.1807 6 8 4.2793 1.4280 -1.2220 7 6 4.0871 3.4253 0.1251 8 7 5.5428 3.5905 0.1239 9 6 6.0813 4.8218 0.2249 10 8 5.3609 5.7932 0.3164 11 6 7.5788 4.9917 0.2242 12 6 7.9184 6.4547 0.3480 13 6 8.0671 7.2272 -0.7895 14 6 8.3728 8.5694 -0.6792 15 6 8.5425 9.1407 0.5751 16 8 8.8494 10.4584 0.6866 17 6 8.8877 10.9747 1.9315 18 1 8.7602 10.3293 2.7880 19 6 9.0907 12.3344 2.1121 20 7 9.2465 13.1205 1.0689 21 14 9.1445 13.0497 3.8369 22 1 10.2498 12.4173 4.6009 23 1 9.3728 14.5149 3.7582 24 1 7.8542 12.7855 4.5228 25 6 8.3981 8.3610 1.7153 26 6 8.0859 7.0207 1.5986 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 1.8031 2.2372 -0.8900 31 1 1.8032 2.2371 0.8900 32 1 4.0971 0.1170 1.0911 33 1 5.4258 1.2977 1.1800 34 1 3.9332 1.5657 2.1122 35 1 3.9419 1.8674 -2.0146 36 1 3.6593 3.9701 -0.7164 37 1 3.6775 3.8158 1.0567 38 1 6.1190 2.8136 0.0504 39 1 8.0067 4.4472 1.0660 40 1 7.9883 4.6007 -0.7072 41 1 7.9402 6.7811 -1.7649 42 1 8.4845 9.1732 -1.5678 43 1 9.3882 14.0717 1.1952 44 1 8.5299 8.8022 2.6922 45 1 7.9731 6.4140 2.4849 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000150968209.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:13 Heat of formation + Delta-G solvation = -93.889108 kcal Electronic energy + Delta-G solvation = -25969.763112 eV Core-core repulsion = 22079.242109 eV Total energy + Delta-G solvation = -3890.521003 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.07514 -39.02246 -38.35673 -36.44451 -34.43725 -32.68473 -32.37913 -31.27210 -30.10207 -29.58214 -27.88236 -27.55188 -25.84674 -24.85568 -21.92479 -21.19840 -20.99297 -20.02338 -17.95954 -17.90798 -17.06511 -16.88278 -16.18552 -16.00267 -15.76101 -15.23978 -15.07180 -14.55684 -14.52026 -14.28306 -14.11445 -14.07433 -13.62274 -13.55402 -13.34110 -13.24153 -12.90423 -12.71067 -12.64423 -12.52145 -12.37642 -12.22122 -11.78438 -11.56545 -11.45618 -11.22142 -10.82785 -10.71974 -10.63613 -10.58945 -10.40377 -10.34655 -9.71470 -9.28490 -9.17796 -8.77649 -8.10094 -8.09742 -7.11592 -6.40451 -3.99047 1.11563 2.08356 2.29592 2.31040 2.78192 3.11239 3.15847 3.19079 3.20142 3.73870 4.00621 4.09461 4.22086 4.24628 4.59662 4.63825 4.66259 4.75677 4.92859 5.01027 5.12999 5.21444 5.23080 5.27697 5.31456 5.37244 5.41602 5.44969 5.51712 5.71416 5.77612 5.79696 5.89823 6.26410 6.29690 6.46749 6.75303 6.96456 7.09962 7.12815 7.28579 7.41861 7.45983 7.50308 7.89038 8.04758 8.32831 9.05153 9.76066 10.77648 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.025076 B = 0.001737 C = 0.001691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.326293 B =16111.255744 C =16552.572323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 S -0.227 6.227 3 C -0.119 4.119 4 C 0.140 3.860 5 C -0.142 4.142 6 O -0.544 6.544 7 C 0.100 3.900 8 N -0.733 5.733 9 C 0.509 3.491 10 O -0.522 6.522 11 C -0.079 4.079 12 C -0.170 4.170 13 C -0.060 4.060 14 C -0.192 4.192 15 C 0.156 3.844 16 O -0.179 6.179 17 C -0.391 4.391 18 H 0.091 0.909 19 C 0.039 3.961 20 N -0.864 5.864 21 Si 0.941 3.059 22 H -0.270 1.270 23 H -0.278 1.278 24 H -0.270 1.270 25 C -0.233 4.233 26 C -0.057 4.057 27 H 0.101 0.899 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.087 0.913 31 H 0.093 0.907 32 H 0.078 0.922 33 H 0.067 0.933 34 H 0.075 0.925 35 H 0.379 0.621 36 H 0.069 0.931 37 H 0.076 0.924 38 H 0.403 0.597 39 H 0.092 0.908 40 H 0.093 0.907 41 H 0.108 0.892 42 H 0.116 0.884 43 H 0.270 0.730 44 H 0.126 0.874 45 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.103 -26.767 -1.820 29.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.303 4.303 2 S -0.001 6.001 3 C -0.268 4.268 4 C 0.098 3.902 5 C -0.199 4.199 6 O -0.350 6.350 7 C -0.027 4.027 8 N -0.388 5.388 9 C 0.296 3.704 10 O -0.396 6.396 11 C -0.119 4.119 12 C -0.171 4.171 13 C -0.078 4.078 14 C -0.211 4.211 15 C 0.103 3.897 16 O -0.082 6.082 17 C -0.468 4.468 18 H 0.108 0.892 19 C -0.165 4.165 20 N -0.499 5.499 21 Si 0.765 3.235 22 H -0.195 1.195 23 H -0.203 1.203 24 H -0.195 1.195 25 C -0.252 4.252 26 C -0.075 4.075 27 H 0.120 0.880 28 H 0.095 0.905 29 H 0.094 0.906 30 H 0.105 0.895 31 H 0.112 0.888 32 H 0.097 0.903 33 H 0.086 0.914 34 H 0.094 0.906 35 H 0.227 0.773 36 H 0.087 0.913 37 H 0.094 0.906 38 H 0.238 0.762 39 H 0.110 0.890 40 H 0.111 0.889 41 H 0.126 0.874 42 H 0.134 0.866 43 H 0.080 0.920 44 H 0.144 0.856 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -12.565 -26.867 -1.551 29.700 hybrid contribution -1.146 1.444 0.490 1.907 sum -13.711 -25.424 -1.061 28.904 Atomic orbital electron populations 1.23478 0.95353 1.06571 1.04900 1.87078 1.05870 1.09160 1.97950 1.24182 1.00085 0.96504 1.06077 1.21119 0.89371 0.92423 0.87313 1.21810 1.01543 1.01422 0.95153 1.86607 1.69941 1.63500 1.14934 1.21874 0.82790 0.94799 1.03194 1.45958 1.06555 1.09256 1.77046 1.21098 0.91567 0.82179 0.75592 1.90749 1.62811 1.38763 1.47258 1.20399 0.91101 0.96510 1.03881 1.18635 1.11387 0.93367 0.93715 1.20403 0.97743 0.92888 0.96784 1.20155 1.10447 0.94990 0.95490 1.19379 0.91561 0.85466 0.93334 1.83976 1.75260 1.17764 1.31200 1.21278 1.51472 0.92213 0.81792 0.89151 1.25279 0.96640 0.94971 0.99633 1.70029 1.45075 1.05164 1.29605 0.85789 0.79122 0.78152 0.80408 1.19530 1.20303 1.19531 1.21104 1.10831 0.94272 0.98982 1.20505 0.96984 0.94356 0.95656 0.88015 0.90537 0.90569 0.89482 0.88804 0.90333 0.91386 0.90635 0.77302 0.91285 0.90607 0.76201 0.88996 0.88915 0.87397 0.86560 0.92030 0.85607 0.87842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.61 10.76 101.05 1.09 0.47 16 2 S -0.23 -1.56 20.42 -107.50 -2.19 -3.76 16 3 C -0.12 -0.68 5.16 37.16 0.19 -0.49 16 4 C 0.14 0.90 0.73 -90.62 -0.07 0.84 16 5 C -0.14 -0.94 8.35 37.16 0.31 -0.63 16 6 O -0.54 -3.76 12.48 -35.23 -0.44 -4.20 16 7 C 0.10 0.83 4.78 -4.04 -0.02 0.81 16 8 N -0.73 -6.89 5.15 -60.29 -0.31 -7.21 16 9 C 0.51 6.89 7.82 -10.98 -0.09 6.81 16 10 O -0.52 -9.71 16.03 5.56 0.09 -9.62 16 11 C -0.08 -0.99 5.83 -29.03 -0.17 -1.16 16 12 C -0.17 -2.99 4.38 -104.58 -0.46 -3.45 16 13 C -0.06 -1.12 9.69 -39.61 -0.38 -1.51 16 14 C -0.19 -4.25 9.99 -39.40 -0.39 -4.64 16 15 C 0.16 3.94 6.65 -39.11 -0.26 3.68 16 16 O -0.18 -5.26 9.76 0.04 0.00 -5.26 16 17 C -0.39 -11.23 9.49 30.89 0.29 -10.93 16 18 H 0.09 2.40 5.20 -52.49 -0.27 2.13 16 19 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 20 N -0.86 -25.79 13.67 55.48 0.76 -25.04 16 21 Si 0.94 20.94 29.55 -169.99 -5.02 15.92 16 22 H -0.27 -5.80 7.11 56.52 0.40 -5.39 16 23 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 24 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 25 C -0.23 -5.29 9.17 -39.39 -0.36 -5.65 16 26 C -0.06 -1.09 9.69 -39.61 -0.38 -1.47 16 27 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.08 0.30 8.14 -51.92 -0.42 -0.12 16 29 H 0.08 0.30 8.14 -51.92 -0.42 -0.12 16 30 H 0.09 0.42 8.14 -51.92 -0.42 0.00 16 31 H 0.09 0.49 8.14 -51.92 -0.42 0.07 16 32 H 0.08 0.58 6.72 -51.92 -0.35 0.23 16 33 H 0.07 0.44 6.86 -51.93 -0.36 0.08 16 34 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 35 H 0.38 1.67 9.04 45.56 0.41 2.08 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.40 2.96 7.19 -40.82 -0.29 2.66 16 39 H 0.09 0.94 8.08 -51.93 -0.42 0.52 16 40 H 0.09 0.94 8.08 -51.93 -0.42 0.52 16 41 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16 42 H 0.12 2.48 8.06 -52.48 -0.42 2.06 16 43 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 44 H 0.13 2.84 5.64 -52.49 -0.30 2.55 16 45 H 0.10 1.70 8.06 -52.49 -0.42 1.28 16 LS Contribution 390.82 15.07 5.89 5.89 Total: -1.00 -35.56 390.82 -7.81 -43.36 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: -5.78 Total: 6.24 kcal Atomic # 6 Polarization: -15.54 SS G_CDS: -0.80 Total: -16.33 kcal Atomic # 7 Polarization: -32.69 SS G_CDS: 0.45 Total: -32.24 kcal Atomic # 8 Polarization: -18.73 SS G_CDS: -0.35 Total: -19.08 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Atomic # 16 Polarization: -1.56 SS G_CDS: -2.19 Total: -3.76 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -35.56 -7.81 -43.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000150968209.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.527 kcal (2) G-P(sol) polarization free energy of solvation -35.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds