Wall clock time and date at job start Tue Mar 31 2020 23:30:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.47018 * 2 1 4 4 S 1.81399 * 109.47000 * 120.00327 * 2 1 3 5 5 O 1.42102 * 108.57939 * 70.50953 * 4 2 1 6 6 O 1.42099 * 108.57791 * 299.48702 * 4 2 1 7 7 C 1.81396 * 101.91934 * 184.99674 * 4 2 1 8 8 C 1.50702 * 109.46989 * 179.97438 * 7 4 2 9 9 O 1.21283 * 120.00262 * 0.02562 * 8 7 4 10 10 N 1.34777 * 119.99928 * 179.72353 * 8 7 4 11 11 C 1.46499 * 120.00199 * 180.27479 * 10 8 7 12 12 H 1.09001 * 109.46948 * 35.00281 * 11 10 8 13 13 C 1.52999 * 109.47481 * 154.99940 * 11 10 8 14 14 C 1.50698 * 109.47141 * 295.00678 * 13 11 10 15 15 H 1.07994 * 120.00042 * 359.97438 * 14 13 11 16 16 C 1.37877 * 119.99710 * 179.97438 * 14 13 11 17 17 N 1.31515 * 120.00499 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 120.00045 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.47105 * 90.00059 * 18 16 14 20 20 H 1.48498 * 109.47057 * 210.00456 * 18 16 14 21 21 H 1.48503 * 109.46745 * 330.00438 * 18 16 14 22 22 C 1.50700 * 109.47514 * 275.00337 * 11 10 8 23 23 C 1.38235 * 119.99909 * 319.72923 * 22 11 10 24 24 C 1.38235 * 120.00203 * 179.78500 * 23 22 11 25 25 C 1.38243 * 119.99736 * 0.43880 * 24 23 22 26 26 C 1.38244 * 119.99802 * 359.81374 * 25 24 23 27 27 C 1.38234 * 120.00041 * 359.97438 * 26 25 24 28 28 H 1.09000 * 109.46944 * 299.99385 * 1 2 3 29 29 H 1.09001 * 109.47052 * 59.99630 * 1 2 3 30 30 H 1.08998 * 109.47315 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46621 * 239.99929 * 2 1 3 32 32 H 1.09000 * 109.46761 * 60.00503 * 3 2 1 33 33 H 1.09001 * 109.46620 * 179.97438 * 3 2 1 34 34 H 1.09001 * 109.47511 * 300.00089 * 3 2 1 35 35 H 1.09004 * 109.47150 * 60.00067 * 7 4 2 36 36 H 1.08994 * 109.47490 * 299.99793 * 7 4 2 37 37 H 0.97000 * 120.00317 * 0.28382 * 10 8 7 38 38 H 1.09006 * 109.46798 * 55.00299 * 13 11 10 39 39 H 1.08995 * 109.47322 * 174.99759 * 13 11 10 40 40 H 0.96993 * 120.00753 * 179.97438 * 17 16 14 41 41 H 1.08003 * 119.99755 * 359.97438 * 23 22 11 42 42 H 1.07999 * 120.00430 * 180.26737 * 24 23 22 43 43 H 1.07994 * 120.00105 * 179.82908 * 25 24 23 44 44 H 1.07997 * 119.99648 * 180.02562 * 26 25 24 45 45 H 1.07994 * 119.99956 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 16 2.1347 -0.8552 1.4811 5 8 1.8619 -2.2432 1.3455 6 8 1.6605 -0.1638 2.6284 7 6 3.9265 -0.6033 1.3539 8 6 4.6104 -1.2592 2.5257 9 8 3.9537 -1.8400 3.3638 10 7 5.9524 -1.2058 2.6391 11 6 6.6177 -1.8486 3.7750 12 1 6.0817 -2.7594 4.0421 13 6 8.0572 -2.1979 3.3920 14 6 8.0486 -3.2331 2.2969 15 1 7.1103 -3.6051 1.9128 16 6 9.2387 -3.7054 1.7854 17 7 10.3814 -3.2529 2.2534 18 14 9.2281 -4.9892 0.4284 19 1 9.2153 -4.3123 -0.8933 20 1 10.4426 -5.8364 0.5390 21 1 8.0177 -5.8393 0.5608 22 6 6.6253 -0.9069 4.9515 23 6 6.8693 0.4398 4.7572 24 6 6.8719 1.3045 5.8358 25 6 6.6395 0.8209 7.1098 26 6 6.4007 -0.5268 7.3047 27 6 6.3938 -1.3906 6.2256 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.6767 1.9562 0.8900 33 1 3.1300 1.4424 0.0005 34 1 1.6767 1.9564 -0.8900 35 1 4.1445 0.4647 1.3578 36 1 4.2907 -1.0450 0.4264 37 1 6.4777 -0.7416 1.9687 38 1 8.5673 -1.3011 3.0402 39 1 8.5789 -2.5945 4.2629 40 1 11.2186 -3.5853 1.8938 41 1 7.0549 0.8170 3.7623 42 1 7.0583 2.3573 5.6835 43 1 6.6443 1.4959 7.9528 44 1 6.2187 -0.9045 8.3000 45 1 6.2068 -2.4433 6.3778 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153292163.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:30:40 Heat of formation + Delta-G solvation = -93.728268 kcal Electronic energy + Delta-G solvation = -27701.276643 eV Core-core repulsion = 23810.762614 eV Total energy + Delta-G solvation = -3890.514028 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -39.80946 -38.51553 -36.99478 -35.99693 -35.45203 -35.28521 -32.85786 -31.71790 -30.52504 -29.99313 -28.72521 -27.57108 -24.92292 -22.95711 -22.34014 -21.99879 -20.86573 -19.87081 -18.72468 -17.57978 -17.16420 -16.48724 -16.40994 -16.18037 -15.91580 -15.39054 -15.09134 -14.83798 -14.56447 -14.43759 -14.01312 -13.68539 -13.49408 -13.24756 -13.13832 -12.97064 -12.72835 -12.59638 -12.39789 -12.13948 -12.01846 -11.94660 -11.80687 -11.77265 -11.68387 -11.18784 -11.09031 -10.93700 -10.77005 -10.64852 -10.53130 -10.40241 -9.85170 -9.84519 -9.35831 -8.65363 -8.53069 -8.50105 -8.21596 -6.14153 -4.18267 -0.19538 1.75639 1.79152 2.65468 2.74859 3.22670 3.24140 3.31408 3.36215 3.81064 3.84574 4.19440 4.22893 4.28820 4.35736 4.68541 4.73985 4.83199 5.03995 5.08094 5.20399 5.22723 5.23428 5.25124 5.25694 5.35595 5.37787 5.51062 5.63239 5.64419 5.88024 5.91846 6.10407 6.31710 6.39854 6.52204 6.72257 6.82245 6.84657 7.05427 7.38504 7.42391 7.52076 7.81755 7.84579 8.19578 8.44089 8.87846 9.47360 10.96215 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.008176 B = 0.004381 C = 0.003133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3423.871461 B = 6389.734041 C = 8934.136801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.587 4.587 3 C -0.148 4.148 4 S 2.452 3.548 5 O -0.920 6.920 6 O -0.919 6.919 7 C -0.660 4.660 8 C 0.538 3.462 9 O -0.538 6.538 10 N -0.685 5.685 11 C 0.181 3.819 12 H 0.092 0.908 13 C 0.024 3.976 14 C -0.525 4.525 15 H 0.059 0.941 16 C 0.062 3.938 17 N -0.891 5.891 18 Si 0.891 3.109 19 H -0.281 1.281 20 H -0.286 1.286 21 H -0.272 1.272 22 C -0.075 4.075 23 C -0.110 4.110 24 C -0.125 4.125 25 C -0.133 4.133 26 C -0.121 4.121 27 C -0.106 4.106 28 H 0.075 0.925 29 H 0.080 0.920 30 H 0.072 0.928 31 H 0.138 0.862 32 H 0.078 0.922 33 H 0.071 0.929 34 H 0.079 0.921 35 H 0.157 0.843 36 H 0.160 0.840 37 H 0.405 0.595 38 H 0.026 0.974 39 H 0.037 0.963 40 H 0.262 0.738 41 H 0.116 0.884 42 H 0.115 0.885 43 H 0.115 0.885 44 H 0.117 0.883 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.077 12.422 -3.334 18.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.695 4.695 3 C -0.206 4.206 4 S 2.628 3.372 5 O -0.917 6.917 6 O -0.916 6.916 7 C -0.788 4.788 8 C 0.321 3.679 9 O -0.417 6.417 10 N -0.334 5.334 11 C 0.077 3.923 12 H 0.110 0.890 13 C -0.013 4.013 14 C -0.563 4.563 15 H 0.077 0.923 16 C -0.140 4.140 17 N -0.530 5.530 18 Si 0.719 3.281 19 H -0.207 1.207 20 H -0.211 1.211 21 H -0.197 1.197 22 C -0.076 4.076 23 C -0.128 4.128 24 C -0.143 4.143 25 C -0.151 4.151 26 C -0.139 4.139 27 C -0.125 4.125 28 H 0.094 0.906 29 H 0.099 0.901 30 H 0.091 0.909 31 H 0.156 0.844 32 H 0.097 0.903 33 H 0.090 0.910 34 H 0.098 0.902 35 H 0.175 0.825 36 H 0.178 0.822 37 H 0.240 0.760 38 H 0.044 0.956 39 H 0.055 0.945 40 H 0.072 0.928 41 H 0.134 0.866 42 H 0.133 0.867 43 H 0.133 0.867 44 H 0.135 0.865 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -13.772 11.529 -2.115 18.085 hybrid contribution 1.071 -0.013 -1.945 2.221 sum -12.701 11.516 -4.060 17.619 Atomic orbital electron populations 1.21620 0.89757 1.03966 1.04649 1.30227 1.07337 1.09937 1.22017 1.21776 1.01643 0.92178 1.05025 1.07589 0.76717 0.75998 0.76854 1.93581 1.82278 1.29584 1.86307 1.93557 1.77438 1.75701 1.44888 1.30889 1.27992 1.11861 1.08100 1.19002 0.83840 0.80273 0.84789 1.90825 1.64330 1.44032 1.42497 1.45843 1.05175 1.55099 1.27268 1.20393 0.97648 0.92704 0.81549 0.89018 1.19404 0.86918 0.97350 0.97646 1.21151 0.92570 1.23085 1.19467 0.92284 1.24984 0.95540 0.96574 0.96944 1.69950 0.97340 1.43340 1.42325 0.86602 0.77759 0.81711 0.82036 1.20685 1.21138 1.19697 1.20498 0.96869 0.94716 0.95483 1.20896 1.00077 0.93146 0.98683 1.21037 1.01053 0.99198 0.92973 1.21015 1.01686 0.95564 0.96856 1.21058 1.00686 0.93669 0.98526 1.21033 0.99360 0.99945 0.92150 0.90580 0.90063 0.90875 0.84438 0.90317 0.90992 0.90191 0.82491 0.82219 0.76010 0.95621 0.94463 0.92799 0.86594 0.86664 0.86743 0.86477 0.86027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.06 9.19 37.16 0.34 -0.72 16 2 C -0.59 -4.51 3.35 -26.73 -0.09 -4.60 16 3 C -0.15 -0.87 8.90 37.15 0.33 -0.54 16 4 S 2.45 32.01 3.50 -107.50 -0.38 31.64 16 5 O -0.92 -15.84 17.95 -59.52 -1.07 -16.91 16 6 O -0.92 -14.98 17.91 -59.53 -1.07 -16.04 16 7 C -0.66 -7.57 5.68 36.01 0.20 -7.36 16 8 C 0.54 9.45 7.81 -10.98 -0.09 9.36 16 9 O -0.54 -11.69 15.29 2.56 0.04 -11.65 16 10 N -0.69 -12.01 4.04 -54.93 -0.22 -12.23 16 11 C 0.18 3.66 2.11 -69.08 -0.15 3.52 16 12 H 0.09 2.04 7.44 -51.93 -0.39 1.65 16 13 C 0.02 0.57 4.49 -27.88 -0.13 0.44 16 14 C -0.52 -13.64 8.84 -34.44 -0.30 -13.95 16 15 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 16 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 17 N -0.89 -25.13 13.29 55.43 0.74 -24.39 16 18 Si 0.89 20.72 29.54 -169.99 -5.02 15.70 16 19 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 20 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 21 H -0.27 -6.35 7.11 56.52 0.40 -5.94 16 22 C -0.07 -1.39 4.91 -104.62 -0.51 -1.90 16 23 C -0.11 -1.82 9.32 -39.58 -0.37 -2.19 16 24 C -0.12 -1.83 10.05 -39.58 -0.40 -2.23 16 25 C -0.13 -1.90 10.05 -39.58 -0.40 -2.30 16 26 C -0.12 -1.85 10.05 -39.58 -0.40 -2.25 16 27 C -0.11 -1.88 9.67 -39.58 -0.38 -2.26 16 28 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.14 0.74 8.14 -51.92 -0.42 0.32 16 32 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.07 0.29 6.39 -51.93 -0.33 -0.04 16 34 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 35 H 0.16 1.14 6.77 -51.92 -0.35 0.79 16 36 H 0.16 1.30 8.14 -51.93 -0.42 0.88 16 37 H 0.40 6.11 8.60 -40.82 -0.35 5.76 16 38 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 41 H 0.12 1.74 7.73 -52.48 -0.41 1.33 16 42 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 43 H 0.11 1.31 8.06 -52.49 -0.42 0.89 16 44 H 0.12 1.48 8.06 -52.49 -0.42 1.05 16 45 H 0.12 2.06 8.04 -52.49 -0.42 1.63 16 LS Contribution 391.18 15.07 5.89 5.89 Total: -1.00 -37.13 391.18 -10.38 -47.51 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: -6.86 Total: 5.92 kcal Atomic # 6 Polarization: -23.00 SS G_CDS: -2.43 Total: -25.43 kcal Atomic # 7 Polarization: -37.14 SS G_CDS: 0.51 Total: -36.62 kcal Atomic # 8 Polarization: -42.51 SS G_CDS: -2.10 Total: -44.60 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Atomic # 16 Polarization: 32.01 SS G_CDS: -0.38 Total: 31.64 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -37.13 -10.38 -47.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153292163.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.218 kcal (2) G-P(sol) polarization free energy of solvation -37.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds