Wall clock time and date at job start Tue Mar 31 2020 23:30:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.47006 * 2 1 4 4 S 1.81399 * 109.47073 * 179.97438 * 3 2 1 5 5 O 1.42102 * 108.57939 * 65.51080 * 4 3 2 6 6 O 1.42099 * 108.57791 * 294.48829 * 4 3 2 7 7 C 1.81396 * 101.91934 * 179.97438 * 4 3 2 8 8 C 1.50702 * 109.46989 * 179.97438 * 7 4 3 9 9 O 1.21283 * 120.00262 * 0.02562 * 8 7 4 10 10 N 1.34777 * 119.99928 * 179.72353 * 8 7 4 11 11 C 1.46499 * 120.00199 * 180.27479 * 10 8 7 12 12 H 1.09001 * 109.46948 * 35.00281 * 11 10 8 13 13 C 1.52999 * 109.47481 * 154.99940 * 11 10 8 14 14 C 1.50698 * 109.47141 * 295.00678 * 13 11 10 15 15 H 1.07994 * 120.00042 * 359.97438 * 14 13 11 16 16 C 1.37877 * 119.99710 * 179.97438 * 14 13 11 17 17 N 1.31515 * 120.00499 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 120.00045 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.46718 * 0.02562 * 18 16 14 20 20 H 1.48493 * 109.46965 * 120.00061 * 18 16 14 21 21 H 1.48496 * 109.46986 * 240.00332 * 18 16 14 22 22 C 1.50700 * 109.47514 * 275.00337 * 11 10 8 23 23 C 1.38235 * 119.99909 * 319.72923 * 22 11 10 24 24 C 1.38235 * 120.00203 * 179.78500 * 23 22 11 25 25 C 1.38243 * 119.99736 * 0.43880 * 24 23 22 26 26 C 1.38244 * 119.99802 * 359.81374 * 25 24 23 27 27 C 1.38234 * 120.00041 * 359.97438 * 26 25 24 28 28 H 1.09007 * 109.47093 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47058 * 299.99871 * 1 2 3 30 30 H 1.08997 * 109.47345 * 60.00280 * 1 2 3 31 31 H 1.09003 * 109.47285 * 239.99740 * 2 1 3 32 32 H 1.08997 * 109.47345 * 119.99720 * 2 1 3 33 33 H 1.08997 * 109.46647 * 59.99889 * 3 2 1 34 34 H 1.08997 * 109.46839 * 300.00030 * 3 2 1 35 35 H 1.09004 * 109.47150 * 60.00067 * 7 4 3 36 36 H 1.08994 * 109.47490 * 299.99793 * 7 4 3 37 37 H 0.97000 * 120.00317 * 0.28382 * 10 8 7 38 38 H 1.09006 * 109.46798 * 55.00299 * 13 11 10 39 39 H 1.08995 * 109.47322 * 174.99759 * 13 11 10 40 40 H 0.96993 * 120.00753 * 179.97438 * 17 16 14 41 41 H 1.08003 * 119.99755 * 359.97438 * 23 22 11 42 42 H 1.07999 * 120.00430 * 180.26737 * 24 23 22 43 43 H 1.07994 * 120.00105 * 179.82908 * 25 24 23 44 44 H 1.07997 * 119.99648 * 180.02562 * 26 25 24 45 45 H 1.07994 * 119.99956 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 16 3.8540 1.4426 0.0008 5 8 4.3072 0.8841 -1.2247 6 8 4.3062 0.8845 1.2268 7 6 4.2286 3.2174 -0.0001 8 6 5.7225 3.4155 0.0010 9 8 6.4618 2.4540 0.0018 10 7 6.2372 4.6611 -0.0050 11 6 7.6894 4.8537 -0.0100 12 1 8.1585 4.0648 -0.5980 13 6 8.0215 6.2144 -0.6256 14 6 7.6131 6.2227 -2.0761 15 1 7.1624 5.3450 -2.5152 16 6 7.8151 7.3508 -2.8427 17 7 8.3646 8.4194 -2.3082 18 14 7.3097 7.3608 -4.6411 19 1 6.7196 6.0453 -4.9967 20 1 6.3050 8.4307 -4.8668 21 1 8.5021 7.6145 -5.4889 22 6 8.2080 4.8020 1.4040 23 6 7.4953 5.4044 2.4240 24 6 7.9686 5.3532 3.7217 25 6 9.1593 4.7074 3.9982 26 6 9.8746 4.1096 2.9774 27 6 9.3990 4.1570 1.6804 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.6766 1.9563 -0.8900 35 1 3.8005 3.6796 0.8894 36 1 3.8013 3.6786 -0.8905 37 1 5.6460 5.4302 -0.0060 38 1 7.4812 6.9963 -0.0916 39 1 9.0934 6.3962 -0.5487 40 1 8.5070 9.2129 -2.8475 41 1 6.5672 5.9123 2.2073 42 1 7.4097 5.8201 4.5192 43 1 9.5305 4.6698 5.0117 44 1 10.8045 3.6048 3.1935 45 1 9.9576 3.6896 0.8830 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153524453.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:30:48 Heat of formation + Delta-G solvation = -96.906253 kcal Electronic energy + Delta-G solvation = -27307.488493 eV Core-core repulsion = 23416.836657 eV Total energy + Delta-G solvation = -3890.651836 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -39.81203 -38.51858 -36.94862 -36.01305 -35.39938 -35.12412 -32.86468 -31.71694 -30.52543 -29.93233 -28.70486 -27.98638 -24.93682 -22.42575 -22.31763 -21.99162 -20.82132 -19.87229 -18.85966 -17.45686 -17.07384 -16.56371 -16.39508 -16.18857 -16.01247 -15.50914 -15.19076 -14.91059 -14.57369 -14.51920 -14.04164 -13.88148 -13.32537 -13.15420 -12.97464 -12.90047 -12.88586 -12.60326 -12.39369 -12.14585 -11.99907 -11.93715 -11.82276 -11.68690 -11.28274 -11.18071 -11.11904 -10.95833 -10.78357 -10.63647 -10.57313 -10.53692 -9.85816 -9.85028 -9.34731 -8.65586 -8.53586 -8.50738 -8.21961 -6.14629 -4.18709 -0.20335 1.75279 1.78793 2.67417 2.74635 3.22096 3.23306 3.31680 3.36208 3.79780 3.89774 4.19668 4.25346 4.35365 4.37860 4.71609 4.75803 4.76887 5.01341 5.11236 5.17128 5.22267 5.24745 5.25218 5.26187 5.35290 5.50731 5.57574 5.60231 5.77418 5.87666 5.91495 6.10024 6.31362 6.39509 6.51825 6.71890 6.81911 6.84313 7.05027 7.38159 7.42163 7.51660 7.81441 7.84196 8.19168 8.43687 8.87719 9.46995 10.95762 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.008188 B = 0.004013 C = 0.002890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3418.699819 B = 6976.045822 C = 9686.284511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.118 4.118 3 C -0.623 4.623 4 S 2.451 3.549 5 O -0.919 6.919 6 O -0.921 6.921 7 C -0.659 4.659 8 C 0.537 3.463 9 O -0.538 6.538 10 N -0.686 5.686 11 C 0.181 3.819 12 H 0.092 0.908 13 C 0.024 3.976 14 C -0.524 4.524 15 H 0.060 0.940 16 C 0.061 3.939 17 N -0.891 5.891 18 Si 0.891 3.109 19 H -0.272 1.272 20 H -0.284 1.284 21 H -0.283 1.283 22 C -0.075 4.075 23 C -0.110 4.110 24 C -0.125 4.125 25 C -0.133 4.133 26 C -0.121 4.121 27 C -0.106 4.106 28 H 0.062 0.938 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.132 0.868 34 H 0.133 0.867 35 H 0.156 0.844 36 H 0.160 0.840 37 H 0.405 0.595 38 H 0.026 0.974 39 H 0.037 0.963 40 H 0.262 0.738 41 H 0.116 0.884 42 H 0.115 0.885 43 H 0.115 0.885 44 H 0.117 0.883 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.270 -9.091 9.301 18.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.156 4.156 3 C -0.751 4.751 4 S 2.628 3.372 5 O -0.916 6.916 6 O -0.918 6.918 7 C -0.787 4.787 8 C 0.320 3.680 9 O -0.416 6.416 10 N -0.334 5.334 11 C 0.077 3.923 12 H 0.110 0.890 13 C -0.014 4.014 14 C -0.562 4.562 15 H 0.078 0.922 16 C -0.141 4.141 17 N -0.530 5.530 18 Si 0.719 3.281 19 H -0.196 1.196 20 H -0.210 1.210 21 H -0.209 1.209 22 C -0.076 4.076 23 C -0.128 4.128 24 C -0.143 4.143 25 C -0.151 4.151 26 C -0.139 4.139 27 C -0.125 4.125 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.100 0.900 32 H 0.099 0.901 33 H 0.151 0.849 34 H 0.152 0.848 35 H 0.174 0.826 36 H 0.178 0.822 37 H 0.240 0.760 38 H 0.044 0.956 39 H 0.055 0.945 40 H 0.071 0.929 41 H 0.134 0.866 42 H 0.133 0.867 43 H 0.133 0.867 44 H 0.135 0.865 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -12.076 -10.247 9.244 18.338 hybrid contribution -1.179 1.574 -1.004 2.208 sum -13.255 -8.672 8.240 17.855 Atomic orbital electron populations 1.21730 0.93950 1.02341 1.02338 1.21272 0.98319 0.91889 1.04125 1.30516 1.26503 1.06429 1.11641 1.07441 0.77204 0.76695 0.75856 1.93586 1.78381 1.73902 1.45757 1.93574 1.78497 1.73960 1.45811 1.30854 1.04308 1.30331 1.13253 1.19008 0.86951 0.84819 0.77192 1.90826 1.60460 1.39638 1.50720 1.45846 1.08876 1.06617 1.72067 1.20389 0.78223 1.02929 0.90728 0.89019 1.19409 0.98370 0.88071 0.95506 1.21190 1.41002 0.99170 0.94839 0.92218 1.24993 0.95042 0.95560 0.98516 1.69961 1.43252 1.03376 1.36363 0.86544 0.78400 0.78061 0.85107 1.19606 1.21032 1.20868 1.20501 0.94945 0.95826 0.96317 1.20896 0.99959 0.99446 0.92503 1.21039 0.96657 1.00120 0.96456 1.21017 0.95814 0.99549 0.98738 1.21060 0.99760 1.00092 0.93035 1.21033 0.96056 0.98727 0.96673 0.91914 0.92278 0.92221 0.90022 0.90074 0.84928 0.84815 0.82617 0.82245 0.76017 0.95621 0.94466 0.92853 0.86599 0.86662 0.86735 0.86467 0.86020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 9.91 37.16 0.37 -0.50 16 2 C -0.12 -0.91 5.94 -26.73 -0.16 -1.07 16 3 C -0.62 -4.37 5.81 37.16 0.22 -4.15 16 4 S 2.45 30.54 3.96 -107.50 -0.43 30.12 16 5 O -0.92 -15.34 17.95 -59.52 -1.07 -16.41 16 6 O -0.92 -14.82 17.95 -59.53 -1.07 -15.89 16 7 C -0.66 -7.29 6.29 36.01 0.23 -7.06 16 8 C 0.54 9.37 7.81 -10.98 -0.09 9.28 16 9 O -0.54 -11.60 15.29 2.56 0.04 -11.56 16 10 N -0.69 -11.99 4.04 -54.93 -0.22 -12.21 16 11 C 0.18 3.66 2.11 -69.08 -0.15 3.52 16 12 H 0.09 2.03 7.44 -51.93 -0.39 1.65 16 13 C 0.02 0.56 4.49 -27.88 -0.13 0.43 16 14 C -0.52 -13.62 8.84 -34.44 -0.30 -13.92 16 15 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 16 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 17 N -0.89 -25.14 13.29 55.43 0.74 -24.40 16 18 Si 0.89 20.70 29.54 -169.99 -5.02 15.68 16 19 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 20 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 22 C -0.07 -1.39 4.91 -104.62 -0.51 -1.91 16 23 C -0.11 -1.83 9.32 -39.58 -0.37 -2.20 16 24 C -0.12 -1.84 10.05 -39.58 -0.40 -2.24 16 25 C -0.13 -1.91 10.05 -39.58 -0.40 -2.31 16 26 C -0.12 -1.86 10.05 -39.58 -0.40 -2.25 16 27 C -0.11 -1.88 9.67 -39.58 -0.38 -2.26 16 28 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.13 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.13 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.16 1.05 8.14 -51.92 -0.42 0.63 16 36 H 0.16 1.25 8.14 -51.93 -0.42 0.82 16 37 H 0.40 6.11 8.60 -40.82 -0.35 5.76 16 38 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.26 7.01 8.31 -40.82 -0.34 6.68 16 41 H 0.12 1.74 7.73 -52.48 -0.41 1.34 16 42 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 43 H 0.11 1.31 8.06 -52.49 -0.42 0.89 16 44 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 45 H 0.12 2.06 8.04 -52.49 -0.42 1.63 16 LS Contribution 395.62 15.07 5.96 5.96 Total: -1.00 -37.55 395.62 -10.66 -48.21 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: -7.03 Total: 5.61 kcal Atomic # 6 Polarization: -22.53 SS G_CDS: -2.57 Total: -25.10 kcal Atomic # 7 Polarization: -37.12 SS G_CDS: 0.51 Total: -36.61 kcal Atomic # 8 Polarization: -41.77 SS G_CDS: -2.10 Total: -43.86 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Atomic # 16 Polarization: 30.54 SS G_CDS: -0.43 Total: 30.12 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -37.55 -10.66 -48.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153524453.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.696 kcal (2) G-P(sol) polarization free energy of solvation -37.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds