Wall clock time and date at job start Tue Mar 31 2020 23:30:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.47006 * 2 1 4 4 S 1.81399 * 109.47073 * 179.97438 * 3 2 1 5 5 O 1.42102 * 108.57939 * 65.51080 * 4 3 2 6 6 O 1.42099 * 108.57791 * 294.48829 * 4 3 2 7 7 C 1.81396 * 101.91934 * 179.97438 * 4 3 2 8 8 C 1.50702 * 109.46989 * 179.97438 * 7 4 3 9 9 O 1.21283 * 120.00262 * 0.02562 * 8 7 4 10 10 N 1.34777 * 119.99928 * 179.72353 * 8 7 4 11 11 C 1.46499 * 120.00199 * 180.27479 * 10 8 7 12 12 H 1.09001 * 109.46948 * 35.00281 * 11 10 8 13 13 C 1.52999 * 109.47481 * 154.99940 * 11 10 8 14 14 C 1.50698 * 109.47141 * 295.00678 * 13 11 10 15 15 H 1.07994 * 120.00042 * 359.97438 * 14 13 11 16 16 C 1.37877 * 119.99710 * 179.97438 * 14 13 11 17 17 N 1.31515 * 120.00499 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 120.00045 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.46718 * 0.02562 * 18 16 14 20 20 H 1.48493 * 109.46965 * 120.00061 * 18 16 14 21 21 H 1.48496 * 109.46986 * 240.00332 * 18 16 14 22 22 C 1.50700 * 109.47514 * 275.00337 * 11 10 8 23 23 C 1.38235 * 119.99909 * 319.72923 * 22 11 10 24 24 C 1.38235 * 120.00203 * 179.78500 * 23 22 11 25 25 C 1.38243 * 119.99736 * 0.43880 * 24 23 22 26 26 C 1.38244 * 119.99802 * 359.81374 * 25 24 23 27 27 C 1.38234 * 120.00041 * 359.97438 * 26 25 24 28 28 H 1.09007 * 109.47093 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47058 * 299.99871 * 1 2 3 30 30 H 1.08997 * 109.47345 * 60.00280 * 1 2 3 31 31 H 1.09003 * 109.47285 * 239.99740 * 2 1 3 32 32 H 1.08997 * 109.47345 * 119.99720 * 2 1 3 33 33 H 1.08997 * 109.46647 * 59.99889 * 3 2 1 34 34 H 1.08997 * 109.46839 * 300.00030 * 3 2 1 35 35 H 1.09004 * 109.47150 * 60.00067 * 7 4 3 36 36 H 1.08994 * 109.47490 * 299.99793 * 7 4 3 37 37 H 0.97000 * 120.00317 * 0.28382 * 10 8 7 38 38 H 1.09006 * 109.46798 * 55.00299 * 13 11 10 39 39 H 1.08995 * 109.47322 * 174.99759 * 13 11 10 40 40 H 0.96993 * 120.00753 * 179.97438 * 17 16 14 41 41 H 1.08003 * 119.99755 * 359.97438 * 23 22 11 42 42 H 1.07999 * 120.00430 * 180.26737 * 24 23 22 43 43 H 1.07994 * 120.00105 * 179.82908 * 25 24 23 44 44 H 1.07997 * 119.99648 * 180.02562 * 26 25 24 45 45 H 1.07994 * 119.99956 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 16 3.8540 1.4426 0.0008 5 8 4.3072 0.8841 -1.2247 6 8 4.3062 0.8845 1.2268 7 6 4.2286 3.2174 -0.0001 8 6 5.7225 3.4155 0.0010 9 8 6.4618 2.4540 0.0018 10 7 6.2372 4.6611 -0.0050 11 6 7.6894 4.8537 -0.0100 12 1 8.1585 4.0648 -0.5980 13 6 8.0215 6.2144 -0.6256 14 6 7.6131 6.2227 -2.0761 15 1 7.1624 5.3450 -2.5152 16 6 7.8151 7.3508 -2.8427 17 7 8.3646 8.4194 -2.3082 18 14 7.3097 7.3608 -4.6411 19 1 6.7196 6.0453 -4.9967 20 1 6.3050 8.4307 -4.8668 21 1 8.5021 7.6145 -5.4889 22 6 8.2080 4.8020 1.4040 23 6 7.4953 5.4044 2.4240 24 6 7.9686 5.3532 3.7217 25 6 9.1593 4.7074 3.9982 26 6 9.8746 4.1096 2.9774 27 6 9.3990 4.1570 1.6804 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.6766 1.9563 -0.8900 35 1 3.8005 3.6796 0.8894 36 1 3.8013 3.6786 -0.8905 37 1 5.6460 5.4302 -0.0060 38 1 7.4812 6.9963 -0.0916 39 1 9.0934 6.3962 -0.5487 40 1 8.5070 9.2129 -2.8475 41 1 6.5672 5.9123 2.2073 42 1 7.4097 5.8201 4.5192 43 1 9.5305 4.6698 5.0117 44 1 10.8045 3.6048 3.1935 45 1 9.9576 3.6896 0.8830 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153524453.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:30:47 Heat of formation + Delta-G solvation = -124.042439 kcal Electronic energy + Delta-G solvation = -27308.665206 eV Core-core repulsion = 23416.836657 eV Total energy + Delta-G solvation = -3891.828550 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.22332 -39.82037 -38.01302 -37.08951 -36.89939 -35.73464 -34.80045 -33.10925 -31.75473 -31.05378 -30.39744 -28.56612 -26.68689 -23.84513 -23.48806 -23.02418 -22.08808 -21.31431 -19.83198 -18.82132 -18.49298 -17.93860 -17.54936 -17.36396 -17.15548 -16.63514 -16.44332 -16.30111 -16.00389 -15.64239 -15.32867 -14.76919 -14.53050 -14.44245 -14.21695 -14.20309 -13.72609 -13.58308 -13.52984 -13.48389 -13.38111 -13.06377 -13.02524 -12.95067 -12.66022 -12.51251 -12.31281 -12.18054 -12.05158 -11.91053 -11.77957 -11.64037 -11.40915 -11.35789 -11.21681 -10.60925 -10.14858 -9.77998 -9.55626 -8.22397 -6.33114 -1.10049 0.47964 0.53733 1.37297 1.41257 1.43471 1.52450 1.80478 2.03626 2.38739 2.83560 2.96780 3.06745 3.11918 3.55830 3.62571 3.82192 3.93696 4.00556 4.04042 4.18954 4.25417 4.30073 4.30568 4.40378 4.48911 4.61577 4.69770 4.72436 4.75501 4.75614 5.09070 5.11794 5.13347 5.17145 5.19874 5.37073 5.39641 5.53945 5.58486 5.62018 5.75348 5.82965 6.13388 6.17873 6.44064 6.79834 7.11244 7.36394 8.88359 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.008188 B = 0.004013 C = 0.002890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3418.699819 B = 6976.045822 C = 9686.284511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.135 4.135 3 C -0.580 4.580 4 S 2.426 3.574 5 O -0.981 6.981 6 O -0.975 6.975 7 C -0.648 4.648 8 C 0.523 3.477 9 O -0.590 6.590 10 N -0.681 5.681 11 C 0.194 3.806 12 H 0.057 0.943 13 C 0.039 3.961 14 C -0.533 4.533 15 H 0.054 0.946 16 C 0.013 3.987 17 N -0.924 5.924 18 Si 0.956 3.044 19 H -0.269 1.269 20 H -0.272 1.272 21 H -0.284 1.284 22 C -0.102 4.102 23 C -0.122 4.122 24 C -0.123 4.123 25 C -0.129 4.129 26 C -0.125 4.125 27 C -0.136 4.136 28 H 0.065 0.935 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.174 0.826 34 H 0.170 0.830 35 H 0.207 0.793 36 H 0.199 0.801 37 H 0.417 0.583 38 H 0.019 0.981 39 H 0.004 0.996 40 H 0.265 0.735 41 H 0.129 0.871 42 H 0.151 0.849 43 H 0.152 0.848 44 H 0.143 0.857 45 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.601 -8.064 10.621 21.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.174 4.174 3 C -0.713 4.713 4 S 2.612 3.388 5 O -0.978 6.978 6 O -0.972 6.972 7 C -0.776 4.776 8 C 0.309 3.691 9 O -0.472 6.472 10 N -0.331 5.331 11 C 0.089 3.911 12 H 0.075 0.925 13 C 0.002 3.998 14 C -0.571 4.571 15 H 0.072 0.928 16 C -0.186 4.186 17 N -0.564 5.564 18 Si 0.781 3.219 19 H -0.193 1.193 20 H -0.197 1.197 21 H -0.210 1.210 22 C -0.104 4.104 23 C -0.140 4.140 24 C -0.141 4.141 25 C -0.147 4.147 26 C -0.143 4.143 27 C -0.155 4.155 28 H 0.084 0.916 29 H 0.091 0.909 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.094 0.906 33 H 0.192 0.808 34 H 0.188 0.812 35 H 0.224 0.776 36 H 0.216 0.784 37 H 0.254 0.746 38 H 0.037 0.963 39 H 0.022 0.978 40 H 0.074 0.926 41 H 0.147 0.853 42 H 0.169 0.831 43 H 0.170 0.830 44 H 0.160 0.840 45 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -15.374 -9.219 10.566 20.808 hybrid contribution -0.172 1.239 -1.347 1.838 sum -15.545 -7.981 9.219 19.757 Atomic orbital electron populations 1.21748 0.91866 1.03110 1.03486 1.21475 0.99999 0.92231 1.03689 1.30212 1.18464 1.07097 1.15558 1.07723 0.80260 0.76978 0.73842 1.93511 1.81358 1.75599 1.47343 1.93504 1.81308 1.75434 1.46929 1.30804 0.99340 1.29841 1.17628 1.20013 0.89723 0.83667 0.75737 1.90807 1.62643 1.41072 1.52636 1.45717 1.07758 1.07554 1.72031 1.19842 0.80140 0.99441 0.91662 0.92472 1.19133 0.96019 0.89881 0.94803 1.21442 1.40683 0.98884 0.96100 0.92784 1.25769 0.95020 0.95201 1.02639 1.70067 1.44348 1.04011 1.37987 0.85537 0.78105 0.78305 0.79937 1.19340 1.19677 1.20999 1.20437 0.96068 0.98070 0.95777 1.21129 1.00420 0.99440 0.93001 1.21484 0.96901 0.99354 0.96369 1.21505 0.95232 0.97838 1.00107 1.21397 1.00813 0.99976 0.92129 1.21196 0.96411 0.99896 0.98007 0.91558 0.90938 0.91206 0.90951 0.90615 0.80778 0.81216 0.77554 0.78381 0.74567 0.96307 0.97807 0.92639 0.85328 0.83128 0.82993 0.83967 0.87186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.20 9.91 71.98 0.71 -0.49 16 2 C -0.13 -1.78 5.94 30.60 0.18 -1.60 16 3 C -0.58 -5.81 5.81 71.98 0.42 -5.39 16 4 S 2.43 59.18 3.96 -56.49 -0.22 58.96 16 5 O -0.98 -34.24 17.95 -125.75 -2.26 -36.49 16 6 O -0.97 -32.28 17.95 -125.75 -2.26 -34.53 16 7 C -0.65 -12.81 6.29 71.24 0.45 -12.36 16 8 C 0.52 18.48 7.81 87.66 0.68 19.17 16 9 O -0.59 -27.06 15.29 -0.17 0.00 -27.06 16 10 N -0.68 -24.24 4.04 -446.09 -1.80 -26.04 16 11 C 0.19 8.35 2.11 44.25 0.09 8.45 16 12 H 0.06 2.80 7.44 -2.39 -0.02 2.78 16 13 C 0.04 1.94 4.49 29.85 0.13 2.07 16 14 C -0.53 -28.58 8.84 25.60 0.23 -28.35 16 15 H 0.05 2.90 7.74 -2.91 -0.02 2.88 16 16 C 0.01 0.69 5.46 84.65 0.46 1.15 16 17 N -0.92 -53.07 13.29 21.45 0.28 -52.78 16 18 Si 0.96 42.71 29.54 68.60 2.03 44.73 16 19 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 20 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 21 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 22 C -0.10 -3.99 4.91 -19.87 -0.10 -4.08 16 23 C -0.12 -3.99 9.32 22.27 0.21 -3.78 16 24 C -0.12 -3.35 10.05 22.27 0.22 -3.13 16 25 C -0.13 -3.39 10.05 22.27 0.22 -3.16 16 26 C -0.13 -3.78 10.05 22.27 0.22 -3.55 16 27 C -0.14 -5.10 9.67 22.27 0.22 -4.89 16 28 H 0.07 0.52 8.14 -2.38 -0.02 0.50 16 29 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 30 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.17 0.44 8.14 -2.39 -0.02 0.43 16 34 H 0.17 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.21 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.20 2.33 8.14 -2.39 -0.02 2.31 16 37 H 0.42 12.34 8.60 -92.71 -0.80 11.54 16 38 H 0.02 0.94 8.14 -2.38 -0.02 0.92 16 39 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 40 H 0.26 14.32 8.31 -92.71 -0.77 13.55 16 41 H 0.13 3.73 7.73 -2.91 -0.02 3.71 16 42 H 0.15 2.99 8.06 -2.91 -0.02 2.97 16 43 H 0.15 2.84 8.06 -2.91 -0.02 2.82 16 44 H 0.14 3.44 8.06 -2.91 -0.02 3.41 16 45 H 0.11 4.16 8.04 -2.91 -0.02 4.14 16 Total: -1.00 -89.85 395.62 0.31 -89.54 By element: Atomic # 1 Polarization: 23.45 SS G_CDS: 0.18 Total: 23.64 kcal Atomic # 6 Polarization: -44.32 SS G_CDS: 4.36 Total: -39.96 kcal Atomic # 7 Polarization: -77.30 SS G_CDS: -1.52 Total: -78.82 kcal Atomic # 8 Polarization: -93.57 SS G_CDS: -4.52 Total: -98.08 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.73 kcal Atomic # 16 Polarization: 59.18 SS G_CDS: -0.22 Total: 58.96 kcal Total: -89.85 0.31 -89.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153524453.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.503 kcal (2) G-P(sol) polarization free energy of solvation -89.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds