Wall clock time and date at job start Tue Mar 31 2020 23:30:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47121 * 2 1 4 4 S 1.81404 * 109.47142 * 180.02562 * 3 2 1 5 5 O 1.42103 * 108.57932 * 65.51421 * 4 3 2 6 6 O 1.42094 * 108.57879 * 294.49036 * 4 3 2 7 7 C 1.81404 * 101.92266 * 179.97438 * 4 3 2 8 8 C 1.50702 * 109.46803 * 180.02562 * 7 4 3 9 9 O 1.21280 * 120.00208 * 359.97438 * 8 7 4 10 10 N 1.34782 * 119.99469 * 180.02562 * 8 7 4 11 11 C 1.46502 * 119.99717 * 175.03884 * 10 8 7 12 12 H 1.09001 * 109.47081 * 38.67413 * 11 10 8 13 13 C 1.53001 * 109.47016 * 278.67071 * 11 10 8 14 14 C 1.50701 * 109.46726 * 174.20469 * 13 11 10 15 15 H 1.08000 * 120.00052 * 354.86058 * 14 13 11 16 16 C 1.37877 * 119.99782 * 174.58567 * 14 13 11 17 17 N 1.31518 * 119.99836 * 0.27267 * 16 14 13 18 18 Si 1.86795 * 120.00105 * 180.27528 * 16 14 13 19 19 H 1.48496 * 109.47258 * 0.02562 * 18 16 14 20 20 H 1.48505 * 109.47439 * 119.99670 * 18 16 14 21 21 H 1.48497 * 109.47215 * 239.99676 * 18 16 14 22 22 C 1.50700 * 109.46855 * 158.67031 * 11 10 8 23 23 C 1.38227 * 119.99988 * 39.72685 * 22 11 10 24 24 C 1.38237 * 119.99683 * 179.78655 * 23 22 11 25 25 C 1.38236 * 120.00247 * 0.44407 * 24 23 22 26 26 C 1.38236 * 119.99844 * 359.80810 * 25 24 23 27 27 C 1.38233 * 119.99580 * 220.00096 * 22 11 10 28 28 H 1.08998 * 109.46792 * 59.99693 * 1 2 3 29 29 H 1.08996 * 109.47058 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46862 * 299.99869 * 1 2 3 31 31 H 1.09004 * 109.46862 * 240.00131 * 2 1 3 32 32 H 1.09000 * 109.47280 * 120.00481 * 2 1 3 33 33 H 1.09004 * 109.47145 * 60.00305 * 3 2 1 34 34 H 1.08998 * 109.47538 * 299.99850 * 3 2 1 35 35 H 1.08996 * 109.46491 * 60.00169 * 7 4 3 36 36 H 1.08998 * 109.46754 * 300.00250 * 7 4 3 37 37 H 0.96995 * 120.00341 * 355.03350 * 10 8 7 38 38 H 1.09001 * 109.47044 * 54.20777 * 13 11 10 39 39 H 1.08997 * 109.47226 * 294.20257 * 13 11 10 40 40 H 0.97005 * 119.99678 * 180.02562 * 17 16 14 41 41 H 1.07998 * 120.00026 * 359.97438 * 23 22 11 42 42 H 1.08003 * 119.99871 * 180.27742 * 24 23 22 43 43 H 1.08000 * 119.99817 * 179.83930 * 25 24 23 44 44 H 1.07996 * 119.99953 * 180.02562 * 26 25 24 45 45 H 1.07998 * 120.00544 * 359.97438 * 27 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 16 3.8541 1.4425 -0.0008 5 8 4.3063 0.8844 -1.2269 6 8 4.3073 0.8839 1.2247 7 6 4.2288 3.2174 -0.0015 8 6 5.7228 3.4153 -0.0028 9 8 6.4619 2.4537 -0.0027 10 7 6.2375 4.6609 -0.0030 11 6 7.6855 4.8552 0.1055 12 1 8.1994 4.0875 -0.4730 13 6 8.1051 4.7541 1.5734 14 6 9.6078 4.8115 1.6713 15 1 10.2073 4.8265 0.7731 16 6 10.2171 4.8507 2.9075 17 7 9.4870 4.8325 4.0013 18 14 12.0794 4.9296 3.0289 19 1 12.6645 4.9394 1.6640 20 1 12.4768 6.1678 3.7460 21 1 12.5776 3.7451 3.7731 22 6 8.0512 6.2159 -0.4290 23 6 7.2402 7.3034 -0.1637 24 6 7.5781 8.5525 -0.6503 25 6 8.7219 8.7122 -1.4099 26 6 9.5301 7.6236 -1.6796 27 6 9.1945 6.3754 -1.1893 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.6768 1.9563 -0.8900 35 1 3.8015 3.6792 0.8886 36 1 3.8007 3.6787 -0.8914 37 1 5.6492 5.4288 -0.0749 38 1 7.7497 3.8111 1.9887 39 1 7.6726 5.5836 2.1328 40 1 9.9157 4.8605 4.8710 41 1 6.3444 7.1779 0.4263 42 1 6.9468 9.4030 -0.4393 43 1 8.9844 9.6876 -1.7922 44 1 10.4239 7.7485 -2.2727 45 1 9.8260 5.5249 -1.4000 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153524542.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:30:52 Heat of formation + Delta-G solvation = -91.620715 kcal Electronic energy + Delta-G solvation = -27137.705980 eV Core-core repulsion = 23247.283342 eV Total energy + Delta-G solvation = -3890.422638 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -39.84201 -38.62702 -36.93743 -35.99679 -35.32862 -35.10286 -32.93856 -31.64014 -30.54665 -29.97894 -28.54733 -27.98781 -24.83897 -22.47432 -22.36733 -22.14284 -20.79776 -19.68229 -18.86775 -17.70681 -17.11004 -16.56440 -16.37641 -16.12828 -15.84955 -15.48866 -15.04027 -14.77978 -14.69469 -14.45133 -13.99738 -13.87840 -13.47328 -13.07599 -12.98483 -12.90162 -12.88161 -12.66166 -12.45065 -12.16761 -11.98112 -11.91997 -11.81689 -11.56776 -11.27656 -11.19426 -11.11457 -10.87318 -10.73175 -10.69078 -10.57034 -10.11056 -9.99736 -9.89037 -9.15009 -8.68282 -8.52444 -8.35066 -8.11736 -5.99563 -4.00965 -0.20781 1.76013 1.80261 2.67045 2.70878 3.17429 3.33507 3.40988 3.44542 3.77704 3.89135 4.20798 4.25340 4.36267 4.46984 4.63961 4.74689 4.75651 5.00436 5.03969 5.16269 5.18267 5.22538 5.26509 5.32386 5.38529 5.46955 5.58370 5.60854 5.77548 5.85554 5.93943 6.12973 6.32557 6.44650 6.62737 6.67577 6.79753 6.85775 7.08680 7.37679 7.49627 7.65534 7.79768 7.97490 8.30384 8.40084 9.02463 9.62077 11.12270 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012071 B = 0.003138 C = 0.002663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2319.133758 B = 8920.225896 C =10512.898499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.118 4.118 3 C -0.622 4.622 4 S 2.450 3.550 5 O -0.921 6.921 6 O -0.914 6.914 7 C -0.660 4.660 8 C 0.538 3.462 9 O -0.522 6.522 10 N -0.710 5.710 11 C 0.177 3.823 12 H 0.091 0.909 13 C 0.022 3.978 14 C -0.512 4.512 15 H 0.059 0.941 16 C 0.060 3.940 17 N -0.893 5.893 18 Si 0.892 3.108 19 H -0.272 1.272 20 H -0.285 1.285 21 H -0.284 1.284 22 C -0.048 4.048 23 C -0.121 4.121 24 C -0.121 4.121 25 C -0.134 4.134 26 C -0.120 4.120 27 C -0.096 4.096 28 H 0.058 0.942 29 H 0.062 0.938 30 H 0.058 0.942 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.133 0.867 34 H 0.132 0.868 35 H 0.158 0.842 36 H 0.155 0.845 37 H 0.395 0.605 38 H 0.027 0.973 39 H 0.024 0.976 40 H 0.260 0.740 41 H 0.115 0.885 42 H 0.115 0.885 43 H 0.114 0.886 44 H 0.117 0.883 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.044 1.825 -10.895 21.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.157 4.157 3 C -0.750 4.750 4 S 2.627 3.373 5 O -0.918 6.918 6 O -0.911 6.911 7 C -0.788 4.788 8 C 0.321 3.679 9 O -0.399 6.399 10 N -0.361 5.361 11 C 0.075 3.925 12 H 0.109 0.891 13 C -0.016 4.016 14 C -0.550 4.550 15 H 0.077 0.923 16 C -0.142 4.142 17 N -0.532 5.532 18 Si 0.720 3.280 19 H -0.196 1.196 20 H -0.211 1.211 21 H -0.210 1.210 22 C -0.049 4.049 23 C -0.139 4.139 24 C -0.139 4.139 25 C -0.152 4.152 26 C -0.138 4.138 27 C -0.115 4.115 28 H 0.077 0.923 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.099 0.901 32 H 0.101 0.899 33 H 0.152 0.848 34 H 0.150 0.850 35 H 0.176 0.824 36 H 0.173 0.827 37 H 0.230 0.770 38 H 0.046 0.954 39 H 0.043 0.957 40 H 0.070 0.930 41 H 0.133 0.867 42 H 0.133 0.867 43 H 0.132 0.868 44 H 0.135 0.865 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -16.885 0.463 -10.691 19.990 hybrid contribution 0.116 1.529 0.379 1.579 sum -16.769 1.992 -10.312 19.787 Atomic orbital electron populations 1.21728 0.93978 1.02357 1.02272 1.21275 0.98276 0.91887 1.04214 1.30516 1.26539 1.06450 1.11533 1.07501 0.77216 0.76610 0.75951 1.93574 1.78509 1.73834 1.45896 1.93610 1.78218 1.73614 1.45627 1.30880 1.04107 1.30795 1.13024 1.18942 0.86991 0.84604 0.77379 1.90886 1.60341 1.39395 1.49274 1.46146 1.09606 1.06795 1.73518 1.20479 0.77386 0.93085 1.01571 0.89097 1.19469 0.97033 0.98163 0.86922 1.21051 0.90967 1.50603 0.92422 0.92271 1.24951 0.98166 0.95227 0.95830 1.69972 1.35075 1.50643 0.97525 0.86534 0.85807 0.77515 0.78178 1.19643 1.21125 1.20963 1.19858 0.94977 0.95038 0.94999 1.20822 1.00151 0.92660 1.00316 1.20970 0.97475 0.96781 0.98688 1.20995 0.95727 0.98322 1.00157 1.21057 0.99341 0.92920 1.00461 1.20992 0.96253 0.97619 0.96616 0.92322 0.91901 0.92246 0.90052 0.89942 0.84848 0.85004 0.82366 0.82702 0.77038 0.95449 0.95720 0.93042 0.86733 0.86679 0.86802 0.86507 0.85913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.84 9.91 37.16 0.37 -0.47 16 2 C -0.12 -0.90 5.94 -26.73 -0.16 -1.06 16 3 C -0.62 -4.16 5.81 37.16 0.22 -3.94 16 4 S 2.45 30.36 3.96 -107.50 -0.43 29.94 16 5 O -0.92 -14.72 17.94 -59.54 -1.07 -15.79 16 6 O -0.91 -15.69 17.95 -59.51 -1.07 -16.76 16 7 C -0.66 -6.90 6.29 36.01 0.23 -6.67 16 8 C 0.54 9.37 7.71 -10.98 -0.08 9.28 16 9 O -0.52 -11.80 15.32 2.55 0.04 -11.76 16 10 N -0.71 -11.79 5.05 -54.93 -0.28 -12.07 16 11 C 0.18 3.64 2.19 -69.08 -0.15 3.49 16 12 H 0.09 2.02 7.49 -51.93 -0.39 1.63 16 13 C 0.02 0.56 4.68 -27.88 -0.13 0.43 16 14 C -0.51 -14.31 8.53 -34.44 -0.29 -14.61 16 15 H 0.06 1.60 6.79 -52.49 -0.36 1.24 16 16 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 17 N -0.89 -27.05 13.29 55.43 0.74 -26.31 16 18 Si 0.89 22.07 29.54 -169.99 -5.02 17.05 16 19 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 20 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 21 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 22 C -0.05 -0.88 4.50 -104.63 -0.47 -1.35 16 23 C -0.12 -1.92 9.02 -39.59 -0.36 -2.28 16 24 C -0.12 -1.71 10.05 -39.58 -0.40 -2.11 16 25 C -0.13 -1.87 10.05 -39.58 -0.40 -2.27 16 26 C -0.12 -1.81 10.05 -39.58 -0.40 -2.21 16 27 C -0.10 -1.69 8.83 -39.58 -0.35 -2.04 16 28 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.13 0.58 8.14 -51.92 -0.42 0.15 16 34 H 0.13 0.51 8.14 -51.92 -0.42 0.08 16 35 H 0.16 1.10 8.14 -51.93 -0.42 0.67 16 36 H 0.15 0.89 8.14 -51.92 -0.42 0.47 16 37 H 0.39 4.96 6.87 -40.82 -0.28 4.68 16 38 H 0.03 0.79 8.08 -51.93 -0.42 0.37 16 39 H 0.02 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.26 7.44 8.31 -40.82 -0.34 7.11 16 41 H 0.11 1.59 6.95 -52.49 -0.36 1.22 16 42 H 0.12 1.30 8.06 -52.48 -0.42 0.88 16 43 H 0.11 1.27 8.06 -52.49 -0.42 0.85 16 44 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 45 H 0.12 2.14 7.84 -52.49 -0.41 1.72 16 LS Contribution 391.29 15.07 5.90 5.90 Total: -1.00 -40.32 391.29 -10.52 -50.84 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: -6.85 Total: 3.15 kcal Atomic # 6 Polarization: -21.70 SS G_CDS: -2.48 Total: -24.18 kcal Atomic # 7 Polarization: -38.84 SS G_CDS: 0.46 Total: -38.38 kcal Atomic # 8 Polarization: -42.21 SS G_CDS: -2.10 Total: -44.31 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Atomic # 16 Polarization: 30.36 SS G_CDS: -0.43 Total: 29.94 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -40.32 -10.52 -50.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153524542.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.785 kcal (2) G-P(sol) polarization free energy of solvation -40.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds