Wall clock time and date at job start Tue Mar 31 2020 23:30:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47121 * 2 1 4 4 S 1.81404 * 109.47142 * 180.02562 * 3 2 1 5 5 O 1.42103 * 108.57932 * 65.51421 * 4 3 2 6 6 O 1.42094 * 108.57879 * 294.49036 * 4 3 2 7 7 C 1.81404 * 101.92266 * 179.97438 * 4 3 2 8 8 C 1.50702 * 109.46803 * 180.02562 * 7 4 3 9 9 O 1.21280 * 120.00208 * 359.97438 * 8 7 4 10 10 N 1.34782 * 119.99469 * 180.02562 * 8 7 4 11 11 C 1.46502 * 119.99717 * 175.03884 * 10 8 7 12 12 H 1.09001 * 109.47081 * 38.67413 * 11 10 8 13 13 C 1.53001 * 109.47016 * 278.67071 * 11 10 8 14 14 C 1.50701 * 109.46726 * 174.20469 * 13 11 10 15 15 H 1.08000 * 120.00052 * 354.86058 * 14 13 11 16 16 C 1.37877 * 119.99782 * 174.58567 * 14 13 11 17 17 N 1.31518 * 119.99836 * 0.27267 * 16 14 13 18 18 Si 1.86795 * 120.00105 * 180.27528 * 16 14 13 19 19 H 1.48496 * 109.47258 * 0.02562 * 18 16 14 20 20 H 1.48505 * 109.47439 * 119.99670 * 18 16 14 21 21 H 1.48497 * 109.47215 * 239.99676 * 18 16 14 22 22 C 1.50700 * 109.46855 * 158.67031 * 11 10 8 23 23 C 1.38227 * 119.99988 * 39.72685 * 22 11 10 24 24 C 1.38237 * 119.99683 * 179.78655 * 23 22 11 25 25 C 1.38236 * 120.00247 * 0.44407 * 24 23 22 26 26 C 1.38236 * 119.99844 * 359.80810 * 25 24 23 27 27 C 1.38233 * 119.99580 * 220.00096 * 22 11 10 28 28 H 1.08998 * 109.46792 * 59.99693 * 1 2 3 29 29 H 1.08996 * 109.47058 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46862 * 299.99869 * 1 2 3 31 31 H 1.09004 * 109.46862 * 240.00131 * 2 1 3 32 32 H 1.09000 * 109.47280 * 120.00481 * 2 1 3 33 33 H 1.09004 * 109.47145 * 60.00305 * 3 2 1 34 34 H 1.08998 * 109.47538 * 299.99850 * 3 2 1 35 35 H 1.08996 * 109.46491 * 60.00169 * 7 4 3 36 36 H 1.08998 * 109.46754 * 300.00250 * 7 4 3 37 37 H 0.96995 * 120.00341 * 355.03350 * 10 8 7 38 38 H 1.09001 * 109.47044 * 54.20777 * 13 11 10 39 39 H 1.08997 * 109.47226 * 294.20257 * 13 11 10 40 40 H 0.97005 * 119.99678 * 180.02562 * 17 16 14 41 41 H 1.07998 * 120.00026 * 359.97438 * 23 22 11 42 42 H 1.08003 * 119.99871 * 180.27742 * 24 23 22 43 43 H 1.08000 * 119.99817 * 179.83930 * 25 24 23 44 44 H 1.07996 * 119.99953 * 180.02562 * 26 25 24 45 45 H 1.07998 * 120.00544 * 359.97438 * 27 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 16 3.8541 1.4425 -0.0008 5 8 4.3063 0.8844 -1.2269 6 8 4.3073 0.8839 1.2247 7 6 4.2288 3.2174 -0.0015 8 6 5.7228 3.4153 -0.0028 9 8 6.4619 2.4537 -0.0027 10 7 6.2375 4.6609 -0.0030 11 6 7.6855 4.8552 0.1055 12 1 8.1994 4.0875 -0.4730 13 6 8.1051 4.7541 1.5734 14 6 9.6078 4.8115 1.6713 15 1 10.2073 4.8265 0.7731 16 6 10.2171 4.8507 2.9075 17 7 9.4870 4.8325 4.0013 18 14 12.0794 4.9296 3.0289 19 1 12.6645 4.9394 1.6640 20 1 12.4768 6.1678 3.7460 21 1 12.5776 3.7451 3.7731 22 6 8.0512 6.2159 -0.4290 23 6 7.2402 7.3034 -0.1637 24 6 7.5781 8.5525 -0.6503 25 6 8.7219 8.7122 -1.4099 26 6 9.5301 7.6236 -1.6796 27 6 9.1945 6.3754 -1.1893 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.6768 1.9563 -0.8900 35 1 3.8015 3.6792 0.8886 36 1 3.8007 3.6787 -0.8914 37 1 5.6492 5.4288 -0.0749 38 1 7.7497 3.8111 1.9887 39 1 7.6726 5.5836 2.1328 40 1 9.9157 4.8605 4.8710 41 1 6.3444 7.1779 0.4263 42 1 6.9468 9.4030 -0.4393 43 1 8.9844 9.6876 -1.7922 44 1 10.4239 7.7485 -2.2727 45 1 9.8260 5.5249 -1.4000 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153524542.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:30:51 Heat of formation + Delta-G solvation = -122.829516 kcal Electronic energy + Delta-G solvation = -27139.059295 eV Core-core repulsion = 23247.283342 eV Total energy + Delta-G solvation = -3891.775953 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.27344 -39.92173 -38.01651 -37.06796 -36.82175 -35.73177 -34.95978 -33.13417 -31.73391 -31.05853 -30.32565 -28.57071 -26.64672 -24.04025 -23.64439 -22.96771 -22.01894 -21.22864 -19.84947 -18.97083 -18.66399 -17.92836 -17.43194 -17.26926 -17.07323 -16.70126 -16.40681 -16.22174 -15.95495 -15.70950 -15.31352 -14.86923 -14.64985 -14.44332 -14.28174 -14.16785 -13.96026 -13.63481 -13.50363 -13.37218 -13.16157 -13.06262 -13.02380 -12.98224 -12.68064 -12.58880 -12.31356 -12.09904 -12.00496 -11.89954 -11.77531 -11.67572 -11.55084 -11.34064 -11.14891 -10.60040 -10.19261 -9.71791 -9.48616 -8.22707 -6.31195 -1.10709 0.52936 0.59629 1.34509 1.35975 1.38110 1.48903 1.80113 1.97427 2.38699 2.85143 2.99210 3.06350 3.12265 3.50627 3.62948 3.80716 3.83122 4.01294 4.03783 4.23438 4.26001 4.26618 4.34397 4.46146 4.49536 4.69775 4.71267 4.74929 4.75835 4.81010 5.10514 5.12539 5.13916 5.16087 5.24012 5.37424 5.41847 5.48443 5.63336 5.68383 5.72078 5.86314 6.15401 6.21166 6.35695 6.80308 7.07973 7.36019 8.90108 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012071 B = 0.003138 C = 0.002663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2319.133758 B = 8920.225896 C =10512.898499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.136 4.136 3 C -0.575 4.575 4 S 2.419 3.581 5 O -0.977 6.977 6 O -0.985 6.985 7 C -0.643 4.643 8 C 0.519 3.481 9 O -0.588 6.588 10 N -0.698 5.698 11 C 0.192 3.808 12 H 0.059 0.941 13 C 0.035 3.965 14 C -0.524 4.524 15 H 0.062 0.938 16 C 0.002 3.998 17 N -0.931 5.931 18 Si 0.959 3.041 19 H -0.261 1.261 20 H -0.273 1.273 21 H -0.283 1.283 22 C -0.075 4.075 23 C -0.128 4.128 24 C -0.117 4.117 25 C -0.127 4.127 26 C -0.123 4.123 27 C -0.123 4.123 28 H 0.073 0.927 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.069 0.931 33 H 0.172 0.828 34 H 0.178 0.822 35 H 0.202 0.798 36 H 0.214 0.786 37 H 0.417 0.583 38 H -0.022 1.022 39 H 0.009 0.991 40 H 0.263 0.737 41 H 0.131 0.869 42 H 0.152 0.848 43 H 0.151 0.849 44 H 0.140 0.860 45 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.510 5.499 -12.185 24.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.175 4.175 3 C -0.709 4.709 4 S 2.606 3.394 5 O -0.974 6.974 6 O -0.982 6.982 7 C -0.771 4.771 8 C 0.305 3.695 9 O -0.469 6.469 10 N -0.350 5.350 11 C 0.087 3.913 12 H 0.077 0.923 13 C -0.003 4.003 14 C -0.563 4.563 15 H 0.080 0.920 16 C -0.196 4.196 17 N -0.572 5.572 18 Si 0.784 3.216 19 H -0.185 1.185 20 H -0.199 1.199 21 H -0.209 1.209 22 C -0.075 4.075 23 C -0.146 4.146 24 C -0.135 4.135 25 C -0.145 4.145 26 C -0.141 4.141 27 C -0.142 4.142 28 H 0.092 0.908 29 H 0.083 0.917 30 H 0.089 0.911 31 H 0.093 0.907 32 H 0.088 0.912 33 H 0.190 0.810 34 H 0.196 0.804 35 H 0.220 0.780 36 H 0.231 0.769 37 H 0.256 0.744 38 H -0.004 1.004 39 H 0.028 0.972 40 H 0.071 0.929 41 H 0.149 0.851 42 H 0.170 0.830 43 H 0.169 0.831 44 H 0.158 0.842 45 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -19.325 4.155 -12.001 23.124 hybrid contribution 0.763 0.426 0.740 1.145 sum -18.561 4.581 -11.261 22.188 Atomic orbital electron populations 1.21744 0.91727 1.03089 1.03559 1.21481 1.00081 0.92380 1.03596 1.30182 1.17932 1.07013 1.15740 1.07900 0.80516 0.77238 0.73791 1.93501 1.81430 1.75523 1.46928 1.93528 1.81454 1.75694 1.47488 1.30777 0.98613 1.29787 1.17954 1.20162 0.90033 0.83672 0.75663 1.90862 1.62903 1.41357 1.51770 1.45934 1.08340 1.07814 1.72917 1.19839 0.79632 0.94319 0.97488 0.92322 1.19209 0.96087 0.94685 0.90285 1.21436 0.92348 1.49850 0.92632 0.92026 1.25877 1.03270 0.94902 0.95504 1.70101 1.37167 1.51839 0.98083 0.85482 0.79775 0.77752 0.78628 1.18511 1.19877 1.20886 1.19708 0.96540 0.94213 0.97055 1.21074 1.00390 0.92734 1.00445 1.21417 0.97790 0.96897 0.97358 1.21478 0.94859 0.99350 0.98825 1.21360 1.00429 0.92129 1.00204 1.21077 0.96374 0.98662 0.98065 0.90774 0.91683 0.91140 0.90693 0.91182 0.81029 0.80445 0.78033 0.76905 0.74374 1.00398 0.97215 0.92864 0.85095 0.83012 0.83132 0.84201 0.87505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.18 9.91 71.98 0.71 -0.47 16 2 C -0.14 -1.84 5.94 30.59 0.18 -1.66 16 3 C -0.58 -5.56 5.81 71.98 0.42 -5.15 16 4 S 2.42 60.81 3.96 -56.49 -0.22 60.59 16 5 O -0.98 -33.19 17.94 -125.73 -2.26 -35.45 16 6 O -0.98 -36.66 17.95 -125.76 -2.26 -38.91 16 7 C -0.64 -12.14 6.29 71.24 0.45 -11.70 16 8 C 0.52 18.76 7.71 87.66 0.68 19.44 16 9 O -0.59 -29.09 15.32 -0.15 0.00 -29.09 16 10 N -0.70 -23.73 5.05 -446.08 -2.25 -25.98 16 11 C 0.19 8.38 2.19 44.25 0.10 8.47 16 12 H 0.06 2.89 7.49 -2.39 -0.02 2.87 16 13 C 0.04 1.94 4.68 29.85 0.14 2.08 16 14 C -0.52 -30.81 8.53 25.60 0.22 -30.59 16 15 H 0.06 3.50 6.79 -2.91 -0.02 3.48 16 16 C 0.00 0.13 5.46 84.65 0.46 0.59 16 17 N -0.93 -58.53 13.29 21.45 0.28 -58.25 16 18 Si 0.96 46.32 29.54 68.60 2.03 48.35 16 19 H -0.26 -12.04 7.11 99.48 0.71 -11.33 16 20 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 21 H -0.28 -13.56 7.11 99.48 0.71 -12.85 16 22 C -0.07 -2.77 4.50 -19.87 -0.09 -2.86 16 23 C -0.13 -3.84 9.02 22.27 0.20 -3.64 16 24 C -0.12 -2.86 10.05 22.27 0.22 -2.64 16 25 C -0.13 -3.06 10.05 22.27 0.22 -2.84 16 26 C -0.12 -3.50 10.05 22.27 0.22 -3.28 16 27 C -0.12 -4.41 8.83 22.27 0.20 -4.21 16 28 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 29 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.17 0.52 8.14 -2.39 -0.02 0.50 16 34 H 0.18 0.26 8.14 -2.39 -0.02 0.24 16 35 H 0.20 2.02 8.14 -2.39 -0.02 2.00 16 36 H 0.21 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.42 9.94 6.87 -92.71 -0.64 9.30 16 38 H -0.02 -1.42 8.08 -2.39 -0.02 -1.44 16 39 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 40 H 0.26 15.49 8.31 -92.70 -0.77 14.72 16 41 H 0.13 3.34 6.95 -2.91 -0.02 3.32 16 42 H 0.15 2.61 8.06 -2.91 -0.02 2.58 16 43 H 0.15 2.54 8.06 -2.91 -0.02 2.51 16 44 H 0.14 3.21 8.06 -2.91 -0.02 3.19 16 45 H 0.11 4.00 7.84 -2.91 -0.02 3.97 16 Total: -1.00 -100.63 391.29 0.00 -100.63 By element: Atomic # 1 Polarization: 16.22 SS G_CDS: 0.35 Total: 16.57 kcal Atomic # 6 Polarization: -42.79 SS G_CDS: 4.33 Total: -38.45 kcal Atomic # 7 Polarization: -82.27 SS G_CDS: -1.97 Total: -84.23 kcal Atomic # 8 Polarization: -98.94 SS G_CDS: -4.52 Total: -103.45 kcal Atomic # 14 Polarization: 46.32 SS G_CDS: 2.03 Total: 48.35 kcal Atomic # 16 Polarization: 60.81 SS G_CDS: -0.22 Total: 60.59 kcal Total: -100.63 0.00 -100.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153524542.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.201 kcal (2) G-P(sol) polarization free energy of solvation -100.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -100.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds