Wall clock time and date at job start Tue Mar 31 2020 23:20:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.46999 * 2 1 4 4 O 1.42907 * 109.46994 * 119.99605 * 2 1 3 5 5 C 1.35903 * 116.99739 * 155.31795 * 4 2 1 6 6 C 1.38752 * 120.05403 * 5.08848 * 5 4 2 7 7 C 1.38126 * 119.93773 * 179.74266 * 6 5 4 8 8 C 1.38286 * 120.06041 * 0.50876 * 7 6 5 9 9 C 1.38241 * 120.10884 * 359.76652 * 8 7 6 10 10 C 1.50702 * 119.97395 * 179.97438 * 9 8 7 11 11 H 1.08998 * 109.47273 * 160.02452 * 10 9 8 12 12 O 1.42896 * 109.47015 * 40.01720 * 10 9 8 13 13 C 1.53004 * 109.46937 * 280.01999 * 10 9 8 14 14 N 1.46504 * 109.47062 * 184.99519 * 13 10 9 15 15 C 1.34779 * 119.99794 * 180.02562 * 14 13 10 16 16 O 1.21280 * 119.99752 * 0.02562 * 15 14 13 17 17 C 1.50693 * 119.99750 * 180.02562 * 15 14 13 18 18 S 1.81000 * 109.47311 * 179.97438 * 17 15 14 19 19 C 1.76199 * 100.00469 * 180.02562 * 18 17 15 20 20 H 1.08001 * 119.99746 * 0.02562 * 19 18 17 21 21 C 1.38796 * 120.00059 * 179.97438 * 19 18 17 22 22 N 1.31631 * 119.99905 * 179.97438 * 21 19 18 23 23 Si 1.86800 * 119.99956 * 0.02562 * 21 19 18 24 24 H 1.48498 * 109.47322 * 89.99735 * 23 21 19 25 25 H 1.48506 * 109.46925 * 209.99866 * 23 21 19 26 26 H 1.48501 * 109.46948 * 329.99252 * 23 21 19 27 27 C 1.38172 * 120.05759 * 359.97438 * 9 8 7 28 28 H 1.09003 * 109.47167 * 60.00023 * 1 2 3 29 29 H 1.09003 * 109.47653 * 300.00091 * 1 2 3 30 30 H 1.09004 * 109.47726 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47050 * 239.99727 * 2 1 3 32 32 H 1.09005 * 109.47094 * 179.97438 * 3 2 1 33 33 H 1.08993 * 109.46959 * 299.99476 * 3 2 1 34 34 H 1.08999 * 109.47190 * 60.00418 * 3 2 1 35 35 H 1.07991 * 120.03237 * 359.97368 * 6 5 4 36 36 H 1.08001 * 119.97189 * 180.25199 * 7 6 5 37 37 H 1.07993 * 119.94857 * 179.74403 * 8 7 6 38 38 H 0.96697 * 114.00597 * 300.00804 * 12 10 9 39 39 H 1.08999 * 109.47326 * 305.00051 * 13 10 9 40 40 H 1.09000 * 109.46868 * 65.00081 * 13 10 9 41 41 H 0.96995 * 119.99922 * 0.02562 * 14 13 10 42 42 H 1.08999 * 109.47387 * 300.00284 * 17 15 14 43 43 H 1.09003 * 109.47452 * 60.00356 * 17 15 14 44 44 H 0.96994 * 120.00136 * 180.02562 * 22 21 19 45 45 H 1.08001 * 120.02949 * 179.97438 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0063 -0.6736 1.1669 5 6 3.2493 -1.2190 1.1002 6 6 4.0367 -1.0184 -0.0245 7 6 5.3018 -1.5693 -0.0875 8 6 5.7796 -2.3291 0.9646 9 6 4.9947 -2.5351 2.0838 10 6 5.5183 -3.3640 3.2283 11 1 4.9526 -3.1350 4.1314 12 8 6.8988 -3.0633 3.4417 13 6 5.3656 -4.8493 2.8939 14 7 5.7630 -5.6539 4.0519 15 6 5.7108 -6.9991 3.9876 16 8 5.3353 -7.5435 2.9710 17 6 6.1191 -7.8267 5.1790 18 16 5.9387 -9.5838 4.7834 19 6 6.4672 -10.2961 6.3059 20 1 6.7730 -9.6591 7.1227 21 6 6.4896 -11.6758 6.4558 22 7 6.8850 -12.2079 7.5930 23 14 5.9600 -12.7774 5.0432 24 1 7.1378 -13.0991 4.1979 25 1 5.3817 -14.0334 5.5850 26 1 4.9395 -12.0756 4.2239 27 6 3.7306 -1.9817 2.1540 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 0.5138 0.8900 30 1 -0.3635 -1.0277 0.0005 31 1 1.8932 -0.5139 -0.8899 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9562 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 3.6624 -0.4289 -0.8482 36 1 5.9167 -1.4101 -0.9609 37 1 6.7673 -2.7624 0.9117 38 1 7.4633 -3.2432 2.6775 39 1 4.3258 -5.0605 2.6443 40 1 6.0010 -5.0974 2.0438 41 1 6.0637 -5.2185 4.8648 42 1 7.1587 -7.6152 5.4293 43 1 5.4831 -7.5789 6.0288 44 1 6.9010 -13.1720 7.6976 45 1 3.1177 -2.1433 3.0285 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000156780203.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:20:06 Heat of formation + Delta-G solvation = -109.304530 kcal Electronic energy + Delta-G solvation = -25692.669056 eV Core-core repulsion = 21801.479590 eV Total energy + Delta-G solvation = -3891.189466 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.85629 -39.59065 -38.68387 -36.93635 -34.23342 -33.72790 -32.42414 -32.12235 -30.22510 -29.88600 -27.95853 -27.50001 -25.59984 -24.17659 -23.03490 -22.58795 -20.87175 -20.33410 -18.73306 -17.97608 -17.10617 -16.73530 -16.53655 -16.41057 -15.90846 -15.65857 -15.42575 -14.93908 -14.93173 -14.56209 -14.21360 -14.04752 -13.92726 -13.76753 -13.26836 -13.21094 -12.92309 -12.88094 -12.78120 -12.73836 -12.51954 -12.07602 -12.04491 -11.82957 -11.49878 -11.26749 -11.25467 -11.06612 -10.99676 -10.69396 -10.50438 -9.84628 -9.55072 -9.26331 -9.02479 -8.96648 -8.58235 -8.48562 -6.90256 -6.27370 -3.99047 0.83564 1.05031 2.68005 2.78512 2.98075 3.23150 3.33839 3.38102 3.51727 3.65753 4.06393 4.20096 4.26555 4.33103 4.34618 4.43948 4.48509 4.51821 4.64615 4.72584 4.77969 4.86282 4.97455 5.00663 5.11644 5.13015 5.17210 5.22565 5.28191 5.31083 5.50833 5.55933 5.60084 5.61627 5.67655 5.79556 5.89305 6.00940 6.04350 6.12463 6.31944 6.48840 7.02788 7.19438 7.61960 7.95756 8.43557 8.49344 9.18801 10.81872 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.022655 B = 0.001792 C = 0.001733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.651484 B =15623.158883 C =16148.759427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.076 3.924 3 C -0.181 4.181 4 O -0.310 6.310 5 C 0.135 3.865 6 C -0.209 4.209 7 C -0.076 4.076 8 C -0.147 4.147 9 C -0.074 4.074 10 C 0.139 3.861 11 H 0.117 0.883 12 O -0.548 6.548 13 C 0.096 3.904 14 N -0.732 5.732 15 C 0.531 3.469 16 O -0.521 6.521 17 C -0.124 4.124 18 S -0.143 6.143 19 C -0.521 4.521 20 H 0.088 0.912 21 C 0.096 3.904 22 N -0.880 5.880 23 Si 0.857 3.143 24 H -0.267 1.267 25 H -0.274 1.274 26 H -0.235 1.235 27 C -0.140 4.140 28 H 0.077 0.923 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.074 0.926 32 H 0.063 0.937 33 H 0.072 0.928 34 H 0.068 0.932 35 H 0.130 0.870 36 H 0.127 0.873 37 H 0.124 0.876 38 H 0.377 0.623 39 H 0.078 0.922 40 H 0.072 0.928 41 H 0.404 0.596 42 H 0.098 0.902 43 H 0.098 0.902 44 H 0.271 0.729 45 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.536 30.076 -16.419 35.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.020 3.980 3 C -0.238 4.238 4 O -0.224 6.224 5 C 0.089 3.911 6 C -0.228 4.228 7 C -0.094 4.094 8 C -0.165 4.165 9 C -0.075 4.075 10 C 0.079 3.921 11 H 0.135 0.865 12 O -0.354 6.354 13 C -0.029 4.029 14 N -0.387 5.387 15 C 0.317 3.683 16 O -0.396 6.396 17 C -0.274 4.274 18 S 0.084 5.916 19 C -0.669 4.669 20 H 0.106 0.894 21 C -0.113 4.113 22 N -0.517 5.517 23 Si 0.682 3.318 24 H -0.192 1.192 25 H -0.200 1.200 26 H -0.159 1.159 27 C -0.158 4.158 28 H 0.096 0.904 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.092 0.908 32 H 0.082 0.918 33 H 0.091 0.909 34 H 0.087 0.913 35 H 0.147 0.853 36 H 0.145 0.855 37 H 0.142 0.858 38 H 0.226 0.774 39 H 0.096 0.904 40 H 0.090 0.910 41 H 0.239 0.761 42 H 0.116 0.884 43 H 0.116 0.884 44 H 0.080 0.920 45 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -8.500 29.176 -17.267 34.952 hybrid contribution 0.685 0.148 0.338 0.778 sum -7.814 29.323 -16.929 34.749 Atomic orbital electron populations 1.21864 0.92262 1.03406 1.03154 1.22463 0.95591 0.92598 0.87325 1.22397 1.02191 0.95958 1.03294 1.86142 1.29030 1.68274 1.38948 1.18921 0.84644 0.93195 0.94297 1.21320 0.96372 1.06284 0.98797 1.20904 0.94800 0.95478 0.98189 1.20793 1.00408 1.01553 0.93771 1.20132 0.93925 0.97542 0.95941 1.21042 0.83337 0.91129 0.96549 0.86500 1.86643 1.17075 1.88869 1.42849 1.21945 1.01976 0.89252 0.89697 1.45855 1.69816 1.06060 1.16966 1.20298 0.76977 0.81689 0.89358 1.90701 1.45370 1.71411 1.32090 1.23274 1.05087 1.00320 0.98737 1.84775 1.87850 0.95596 1.23414 1.22324 1.50966 0.95226 0.98366 0.89354 1.24712 0.93579 0.97160 0.95857 1.69938 1.45278 1.12230 1.24243 0.86733 0.81064 0.81108 0.82934 1.19221 1.19953 1.15935 1.20242 0.96196 1.00247 0.99149 0.90435 0.91350 0.91469 0.90826 0.91797 0.90924 0.91303 0.85269 0.85532 0.85823 0.77395 0.90409 0.91023 0.76138 0.88393 0.88395 0.91958 0.84874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.72 9.56 37.15 0.36 -0.36 16 2 C 0.08 0.46 2.85 -26.73 -0.08 0.38 16 3 C -0.18 -0.88 9.17 37.16 0.34 -0.54 16 4 O -0.31 -2.79 9.80 -19.43 -0.19 -2.98 16 5 C 0.13 1.24 6.60 -39.22 -0.26 0.98 16 6 C -0.21 -1.62 8.23 -39.43 -0.32 -1.95 16 7 C -0.08 -0.55 10.04 -39.60 -0.40 -0.95 16 8 C -0.15 -1.14 9.32 -39.56 -0.37 -1.51 16 9 C -0.07 -0.65 4.97 -104.64 -0.52 -1.17 16 10 C 0.14 1.19 3.24 -27.88 -0.09 1.10 16 11 H 0.12 0.94 8.00 -51.93 -0.42 0.52 16 12 O -0.55 -4.78 13.13 -35.23 -0.46 -5.24 16 13 C 0.10 1.05 5.29 -4.04 -0.02 1.03 16 14 N -0.73 -9.36 5.50 -60.29 -0.33 -9.69 16 15 C 0.53 9.48 7.85 -10.99 -0.09 9.39 16 16 O -0.52 -11.31 15.86 5.56 0.09 -11.22 16 17 C -0.12 -2.41 6.16 36.00 0.22 -2.19 16 18 S -0.14 -3.65 18.55 -107.50 -1.99 -5.64 16 19 C -0.52 -15.13 10.04 30.94 0.31 -14.82 16 20 H 0.09 2.67 8.03 -52.49 -0.42 2.25 16 21 C 0.10 2.81 5.50 -17.43 -0.10 2.72 16 22 N -0.88 -26.69 13.97 55.49 0.78 -25.92 16 23 Si 0.86 21.92 27.74 -169.99 -4.72 17.20 16 24 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 25 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 26 H -0.24 -6.02 6.74 56.52 0.38 -5.63 16 27 C -0.14 -1.29 9.61 -39.43 -0.38 -1.67 16 28 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.07 0.39 6.31 -51.93 -0.33 0.07 16 32 H 0.06 0.34 6.91 -51.93 -0.36 -0.02 16 33 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 34 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.13 0.76 5.43 -52.49 -0.29 0.47 16 36 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 37 H 0.12 0.72 6.78 -52.49 -0.36 0.36 16 38 H 0.38 2.28 7.50 45.56 0.34 2.62 16 39 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.40 4.25 8.47 -40.82 -0.35 3.91 16 42 H 0.10 1.78 8.14 -51.92 -0.42 1.36 16 43 H 0.10 1.78 8.14 -51.91 -0.42 1.35 16 44 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 45 H 0.13 1.13 8.04 -52.49 -0.42 0.70 16 LS Contribution 389.04 15.07 5.86 5.86 Total: -1.00 -35.79 389.04 -8.33 -44.12 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: -5.97 Total: 3.06 kcal Atomic # 6 Polarization: -8.17 SS G_CDS: -1.39 Total: -9.56 kcal Atomic # 7 Polarization: -36.05 SS G_CDS: 0.44 Total: -35.61 kcal Atomic # 8 Polarization: -18.87 SS G_CDS: -0.57 Total: -19.44 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -4.72 Total: 17.20 kcal Atomic # 16 Polarization: -3.65 SS G_CDS: -1.99 Total: -5.64 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -35.79 -8.33 -44.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156780203.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.183 kcal (2) G-P(sol) polarization free energy of solvation -35.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds