Wall clock time and date at job start Tue Mar 31 2020 23:20:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.46999 * 2 1 4 4 O 1.42907 * 109.46994 * 119.99605 * 2 1 3 5 5 C 1.35903 * 116.99739 * 155.31795 * 4 2 1 6 6 C 1.38752 * 120.05403 * 5.08848 * 5 4 2 7 7 C 1.38126 * 119.93773 * 179.74266 * 6 5 4 8 8 C 1.38286 * 120.06041 * 0.50876 * 7 6 5 9 9 C 1.38241 * 120.10884 * 359.76652 * 8 7 6 10 10 C 1.50702 * 119.97395 * 179.97438 * 9 8 7 11 11 H 1.08998 * 109.47273 * 160.02452 * 10 9 8 12 12 O 1.42896 * 109.47015 * 40.01720 * 10 9 8 13 13 C 1.53004 * 109.46937 * 280.01999 * 10 9 8 14 14 N 1.46504 * 109.47062 * 184.99519 * 13 10 9 15 15 C 1.34779 * 119.99794 * 180.02562 * 14 13 10 16 16 O 1.21280 * 119.99752 * 0.02562 * 15 14 13 17 17 C 1.50693 * 119.99750 * 180.02562 * 15 14 13 18 18 S 1.81000 * 109.47311 * 179.97438 * 17 15 14 19 19 C 1.76199 * 100.00469 * 180.02562 * 18 17 15 20 20 H 1.08001 * 119.99746 * 0.02562 * 19 18 17 21 21 C 1.38796 * 120.00059 * 179.97438 * 19 18 17 22 22 N 1.31631 * 119.99905 * 179.97438 * 21 19 18 23 23 Si 1.86800 * 119.99956 * 0.02562 * 21 19 18 24 24 H 1.48498 * 109.47322 * 89.99735 * 23 21 19 25 25 H 1.48506 * 109.46925 * 209.99866 * 23 21 19 26 26 H 1.48501 * 109.46948 * 329.99252 * 23 21 19 27 27 C 1.38172 * 120.05759 * 359.97438 * 9 8 7 28 28 H 1.09003 * 109.47167 * 60.00023 * 1 2 3 29 29 H 1.09003 * 109.47653 * 300.00091 * 1 2 3 30 30 H 1.09004 * 109.47726 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47050 * 239.99727 * 2 1 3 32 32 H 1.09005 * 109.47094 * 179.97438 * 3 2 1 33 33 H 1.08993 * 109.46959 * 299.99476 * 3 2 1 34 34 H 1.08999 * 109.47190 * 60.00418 * 3 2 1 35 35 H 1.07991 * 120.03237 * 359.97368 * 6 5 4 36 36 H 1.08001 * 119.97189 * 180.25199 * 7 6 5 37 37 H 1.07993 * 119.94857 * 179.74403 * 8 7 6 38 38 H 0.96697 * 114.00597 * 300.00804 * 12 10 9 39 39 H 1.08999 * 109.47326 * 305.00051 * 13 10 9 40 40 H 1.09000 * 109.46868 * 65.00081 * 13 10 9 41 41 H 0.96995 * 119.99922 * 0.02562 * 14 13 10 42 42 H 1.08999 * 109.47387 * 300.00284 * 17 15 14 43 43 H 1.09003 * 109.47452 * 60.00356 * 17 15 14 44 44 H 0.96994 * 120.00136 * 180.02562 * 22 21 19 45 45 H 1.08001 * 120.02949 * 179.97438 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0063 -0.6736 1.1669 5 6 3.2493 -1.2190 1.1002 6 6 4.0367 -1.0184 -0.0245 7 6 5.3018 -1.5693 -0.0875 8 6 5.7796 -2.3291 0.9646 9 6 4.9947 -2.5351 2.0838 10 6 5.5183 -3.3640 3.2283 11 1 4.9526 -3.1350 4.1314 12 8 6.8988 -3.0633 3.4417 13 6 5.3656 -4.8493 2.8939 14 7 5.7630 -5.6539 4.0519 15 6 5.7108 -6.9991 3.9876 16 8 5.3353 -7.5435 2.9710 17 6 6.1191 -7.8267 5.1790 18 16 5.9387 -9.5838 4.7834 19 6 6.4672 -10.2961 6.3059 20 1 6.7730 -9.6591 7.1227 21 6 6.4896 -11.6758 6.4558 22 7 6.8850 -12.2079 7.5930 23 14 5.9600 -12.7774 5.0432 24 1 7.1378 -13.0991 4.1979 25 1 5.3817 -14.0334 5.5850 26 1 4.9395 -12.0756 4.2239 27 6 3.7306 -1.9817 2.1540 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 0.5138 0.8900 30 1 -0.3635 -1.0277 0.0005 31 1 1.8932 -0.5139 -0.8899 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9562 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 3.6624 -0.4289 -0.8482 36 1 5.9167 -1.4101 -0.9609 37 1 6.7673 -2.7624 0.9117 38 1 7.4633 -3.2432 2.6775 39 1 4.3258 -5.0605 2.6443 40 1 6.0010 -5.0974 2.0438 41 1 6.0637 -5.2185 4.8648 42 1 7.1587 -7.6152 5.4293 43 1 5.4831 -7.5789 6.0288 44 1 6.9010 -13.1720 7.6976 45 1 3.1177 -2.1433 3.0285 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000156780203.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:20:05 Heat of formation + Delta-G solvation = -135.281648 kcal Electronic energy + Delta-G solvation = -25693.795508 eV Core-core repulsion = 21801.479590 eV Total energy + Delta-G solvation = -3892.315918 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.46480 -40.73182 -39.54066 -37.62858 -35.38885 -34.66735 -34.18568 -32.84091 -31.36660 -30.66942 -28.74030 -28.11070 -27.81446 -24.93608 -23.62564 -23.20769 -21.92946 -21.17887 -19.92345 -19.33870 -18.12906 -17.76177 -17.41316 -17.16806 -17.09156 -16.64252 -16.61551 -16.32721 -15.88262 -15.61164 -15.30561 -14.92760 -14.84343 -14.74228 -14.47894 -14.47012 -13.99666 -13.68907 -13.35909 -13.34330 -13.25076 -13.16995 -13.02794 -12.99398 -12.66272 -12.61399 -12.52186 -12.06746 -11.87225 -11.76112 -11.57904 -11.34063 -11.16734 -10.98212 -10.53745 -10.20132 -9.89027 -9.18218 -8.99376 -8.51090 -6.22065 0.22075 0.44750 0.99033 1.31743 1.46997 1.54786 1.55892 2.12781 2.24373 2.27449 2.68939 2.73798 2.87069 3.40694 3.57355 3.73316 3.76594 3.86258 3.93410 3.95672 4.02941 4.06517 4.20023 4.23593 4.30131 4.37282 4.48034 4.53296 4.67122 4.68391 4.77634 4.79796 4.84822 4.89155 5.02208 5.16845 5.23534 5.32263 5.33467 5.43701 5.52060 5.71174 5.76816 6.11978 6.43005 6.46951 6.65945 6.93965 7.16672 8.61318 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.022655 B = 0.001792 C = 0.001733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.651484 B =15623.158883 C =16148.759427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.068 3.932 3 C -0.177 4.177 4 O -0.330 6.330 5 C 0.118 3.882 6 C -0.211 4.211 7 C -0.080 4.080 8 C -0.154 4.154 9 C -0.082 4.082 10 C 0.155 3.845 11 H 0.123 0.877 12 O -0.556 6.556 13 C 0.098 3.902 14 N -0.707 5.707 15 C 0.536 3.464 16 O -0.563 6.563 17 C -0.112 4.112 18 S -0.175 6.175 19 C -0.530 4.530 20 H 0.062 0.938 21 C 0.046 3.954 22 N -0.917 5.917 23 Si 0.915 3.085 24 H -0.262 1.262 25 H -0.259 1.259 26 H -0.237 1.237 27 C -0.159 4.159 28 H 0.099 0.901 29 H 0.063 0.937 30 H 0.058 0.942 31 H 0.081 0.919 32 H 0.058 0.942 33 H 0.092 0.908 34 H 0.061 0.939 35 H 0.146 0.854 36 H 0.151 0.849 37 H 0.144 0.856 38 H 0.389 0.611 39 H 0.069 0.931 40 H 0.072 0.928 41 H 0.418 0.582 42 H 0.114 0.886 43 H 0.114 0.886 44 H 0.277 0.723 45 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.471 31.653 -18.156 37.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.012 3.988 3 C -0.234 4.234 4 O -0.244 6.244 5 C 0.073 3.927 6 C -0.230 4.230 7 C -0.097 4.097 8 C -0.172 4.172 9 C -0.083 4.083 10 C 0.095 3.905 11 H 0.141 0.859 12 O -0.364 6.364 13 C -0.027 4.027 14 N -0.361 5.361 15 C 0.321 3.679 16 O -0.442 6.442 17 C -0.263 4.263 18 S 0.052 5.948 19 C -0.678 4.678 20 H 0.080 0.920 21 C -0.160 4.160 22 N -0.555 5.555 23 Si 0.737 3.263 24 H -0.186 1.186 25 H -0.183 1.183 26 H -0.161 1.161 27 C -0.177 4.177 28 H 0.117 0.883 29 H 0.082 0.918 30 H 0.077 0.923 31 H 0.099 0.901 32 H 0.077 0.923 33 H 0.111 0.889 34 H 0.080 0.920 35 H 0.164 0.836 36 H 0.169 0.831 37 H 0.161 0.839 38 H 0.240 0.760 39 H 0.087 0.913 40 H 0.091 0.909 41 H 0.255 0.745 42 H 0.132 0.868 43 H 0.132 0.868 44 H 0.086 0.914 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -8.421 30.806 -18.985 37.153 hybrid contribution 0.678 -0.141 0.884 1.123 sum -7.742 30.665 -18.101 36.441 Atomic orbital electron populations 1.21895 0.91514 1.03133 1.04008 1.22718 0.96246 0.93077 0.86733 1.22370 1.01809 0.95270 1.03945 1.86119 1.29137 1.68653 1.40524 1.19117 0.85069 0.93624 0.94871 1.21573 0.96466 1.06139 0.98775 1.21252 0.94844 0.94782 0.98856 1.21111 1.01186 1.01421 0.93472 1.20136 0.93935 0.97899 0.96363 1.20840 0.83560 0.89192 0.96874 0.85928 1.86630 1.17112 1.88780 1.43840 1.22072 1.01379 0.90422 0.88783 1.45623 1.67872 1.04410 1.18198 1.19945 0.76852 0.83039 0.88023 1.90692 1.47721 1.72495 1.33267 1.23271 1.06661 0.96130 1.00214 1.84684 1.87830 1.00642 1.21681 1.22470 1.50672 0.95458 0.99164 0.91970 1.25569 0.93630 0.98593 0.98197 1.70016 1.46403 1.13010 1.26027 0.85860 0.80814 0.79668 0.79979 1.18633 1.18326 1.16097 1.20398 0.96731 1.01046 0.99554 0.88261 0.91806 0.92291 0.90135 0.92309 0.88884 0.92019 0.83632 0.83139 0.83871 0.75989 0.91295 0.90940 0.74456 0.86779 0.86815 0.91369 0.85020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 9.56 71.98 0.69 -0.60 16 2 C 0.07 0.75 2.85 30.59 0.09 0.84 16 3 C -0.18 -1.49 9.17 71.98 0.66 -0.83 16 4 O -0.33 -5.89 9.80 -92.45 -0.91 -6.80 16 5 C 0.12 2.11 6.60 22.51 0.15 2.26 16 6 C -0.21 -2.97 8.23 22.37 0.18 -2.78 16 7 C -0.08 -0.99 10.04 22.25 0.22 -0.77 16 8 C -0.15 -2.08 9.32 22.28 0.21 -1.88 16 9 C -0.08 -1.32 4.97 -19.88 -0.10 -1.42 16 10 C 0.16 2.37 3.24 29.85 0.10 2.47 16 11 H 0.12 1.75 8.00 -2.39 -0.02 1.73 16 12 O -0.56 -8.34 13.13 -148.98 -1.96 -10.29 16 13 C 0.10 1.97 5.29 86.38 0.46 2.43 16 14 N -0.71 -16.67 5.50 -463.05 -2.55 -19.22 16 15 C 0.54 18.39 7.85 87.65 0.69 19.08 16 16 O -0.56 -24.03 15.86 -3.03 -0.05 -24.08 16 17 C -0.11 -4.23 6.16 71.23 0.44 -3.79 16 18 S -0.17 -8.89 18.55 -56.49 -1.05 -9.93 16 19 C -0.53 -31.07 10.04 67.95 0.68 -30.38 16 20 H 0.06 3.84 8.03 -2.91 -0.02 3.82 16 21 C 0.05 2.69 5.50 84.86 0.47 3.15 16 22 N -0.92 -56.07 13.97 21.65 0.30 -55.77 16 23 Si 0.91 45.21 27.74 68.60 1.90 47.11 16 24 H -0.26 -12.59 7.11 99.48 0.71 -11.88 16 25 H -0.26 -11.99 7.11 99.48 0.71 -11.28 16 26 H -0.24 -11.70 6.74 99.48 0.67 -11.03 16 27 C -0.16 -2.88 9.61 22.37 0.21 -2.67 16 28 H 0.10 0.40 8.14 -2.39 -0.02 0.38 16 29 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.08 0.75 6.31 -2.39 -0.02 0.74 16 32 H 0.06 0.55 6.91 -2.38 -0.02 0.54 16 33 H 0.09 0.38 8.14 -2.39 -0.02 0.36 16 34 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 35 H 0.15 1.44 5.43 -2.92 -0.02 1.42 16 36 H 0.15 1.09 8.06 -2.91 -0.02 1.07 16 37 H 0.14 1.27 6.78 -2.91 -0.02 1.25 16 38 H 0.39 3.65 7.50 -74.06 -0.56 3.10 16 39 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 40 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 41 H 0.42 7.72 8.47 -92.71 -0.79 6.93 16 42 H 0.11 3.97 8.14 -2.40 -0.02 3.95 16 43 H 0.11 3.96 8.14 -2.39 -0.02 3.94 16 44 H 0.28 15.65 8.31 -92.71 -0.77 14.88 16 45 H 0.13 2.27 8.04 -2.91 -0.02 2.24 16 Total: -1.00 -77.41 389.04 0.48 -76.93 By element: Atomic # 1 Polarization: 17.31 SS G_CDS: -0.36 Total: 16.95 kcal Atomic # 6 Polarization: -20.03 SS G_CDS: 5.14 Total: -14.89 kcal Atomic # 7 Polarization: -72.75 SS G_CDS: -2.25 Total: -74.99 kcal Atomic # 8 Polarization: -38.26 SS G_CDS: -2.91 Total: -41.17 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 1.90 Total: 47.11 kcal Atomic # 16 Polarization: -8.89 SS G_CDS: -1.05 Total: -9.93 kcal Total: -77.41 0.48 -76.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156780203.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.355 kcal (2) G-P(sol) polarization free energy of solvation -77.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds