Wall clock time and date at job start Tue Mar 31 2020 23:20:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47272 * 2 1 4 4 O 1.42901 * 109.46992 * 119.99809 * 2 1 3 5 5 C 1.35902 * 117.00142 * 84.91818 * 4 2 1 6 6 C 1.38727 * 120.05728 * 174.25241 * 5 4 2 7 7 C 1.38149 * 119.94462 * 179.70211 * 6 5 4 8 8 C 1.38268 * 120.05254 * 0.59386 * 7 6 5 9 9 C 1.50702 * 119.94433 * 179.70045 * 8 7 6 10 10 H 1.08995 * 109.46889 * 204.98242 * 9 8 7 11 11 O 1.42898 * 109.47125 * 324.98192 * 9 8 7 12 12 C 1.53003 * 109.46814 * 84.98113 * 9 8 7 13 13 N 1.46494 * 109.46882 * 180.02562 * 12 9 8 14 14 C 1.34775 * 120.00166 * 179.97438 * 13 12 9 15 15 O 1.21283 * 119.99893 * 0.02562 * 14 13 12 16 16 C 1.50702 * 120.00478 * 179.97438 * 14 13 12 17 17 S 1.80998 * 109.47331 * 180.02562 * 16 14 13 18 18 C 1.76200 * 99.99997 * 180.02562 * 17 16 14 19 19 H 1.08001 * 120.00088 * 359.97438 * 18 17 16 20 20 C 1.38801 * 120.00074 * 179.97438 * 18 17 16 21 21 N 1.31628 * 120.00097 * 179.97438 * 20 18 17 22 22 Si 1.86795 * 119.99933 * 0.02562 * 20 18 17 23 23 H 1.48496 * 109.47243 * 89.99645 * 22 20 18 24 24 H 1.48497 * 109.47079 * 209.99880 * 22 20 18 25 25 H 1.48502 * 109.47107 * 330.00069 * 22 20 18 26 26 C 1.38268 * 120.10944 * 359.68411 * 8 7 6 27 27 C 1.38143 * 120.05934 * 0.02562 * 26 8 7 28 28 H 1.09004 * 109.47536 * 300.00606 * 1 2 3 29 29 H 1.09004 * 109.46585 * 60.00414 * 1 2 3 30 30 H 1.09000 * 109.47230 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47438 * 239.99916 * 2 1 3 32 32 H 1.09000 * 109.47364 * 179.97438 * 3 2 1 33 33 H 1.08996 * 109.47199 * 299.99947 * 3 2 1 34 34 H 1.09000 * 109.46958 * 59.99622 * 3 2 1 35 35 H 1.07997 * 120.03089 * 359.97438 * 6 5 4 36 36 H 1.08000 * 119.97373 * 180.32194 * 7 6 5 37 37 H 0.96707 * 114.00053 * 59.99676 * 11 9 8 38 38 H 1.09004 * 109.47093 * 300.00202 * 12 9 8 39 39 H 1.08998 * 109.47138 * 59.99874 * 12 9 8 40 40 H 0.96996 * 120.00176 * 359.97438 * 13 12 9 41 41 H 1.09004 * 109.46746 * 300.00169 * 16 14 13 42 42 H 1.08998 * 109.47186 * 60.00086 * 16 14 13 43 43 H 0.96996 * 120.00256 * 180.02562 * 21 20 18 44 44 H 1.08004 * 119.96786 * 180.02562 * 26 8 7 45 45 H 1.07997 * 120.02712 * 180.02562 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.1108 -2.0269 1.0986 6 6 2.6773 -2.7339 2.1491 7 6 2.7768 -4.1101 2.0799 8 6 2.3235 -4.7816 0.9595 9 6 2.4394 -6.2823 0.8837 10 1 2.4656 -6.5923 -0.1608 11 8 3.6405 -6.7007 1.5351 12 6 1.2343 -6.9224 1.5758 13 7 1.3472 -8.3811 1.5027 14 6 0.3926 -9.1592 2.0500 15 8 -0.5603 -8.6518 2.6027 16 6 0.5084 -10.6599 1.9743 17 16 -0.9171 -11.4172 2.7931 18 6 -0.5330 -13.1212 2.5622 19 1 0.3685 -13.4056 2.0398 20 6 -1.3890 -14.0981 3.0516 21 7 -1.1023 -15.3711 2.8787 22 14 -2.9485 -13.6063 3.9545 23 1 -4.0618 -13.4699 2.9813 24 1 -3.2907 -14.6486 4.9553 25 1 -2.7328 -12.3092 4.6446 26 6 1.7638 -4.0787 -0.0914 27 6 1.6566 -2.7030 -0.0245 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8899 34 1 1.6766 1.9563 0.8900 35 1 3.0362 -2.2094 3.0223 36 1 3.2129 -4.6614 2.8998 37 1 3.6861 -6.4578 2.4701 38 1 1.2081 -6.6122 2.6204 39 1 0.3181 -6.6031 1.0789 40 1 2.1091 -8.7870 1.0604 41 1 0.5341 -10.9701 0.9297 42 1 1.4248 -10.9791 2.4707 43 1 -1.7006 -16.0538 3.2204 44 1 1.4101 -4.6056 -0.9653 45 1 1.2189 -2.1545 -0.8454 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000157396328.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:20:17 Heat of formation + Delta-G solvation = -109.547647 kcal Electronic energy + Delta-G solvation = -25615.051919 eV Core-core repulsion = 21723.851910 eV Total energy + Delta-G solvation = -3891.200008 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.85424 -39.60481 -38.69586 -36.90231 -34.20907 -33.76436 -32.42882 -31.46675 -31.24935 -29.74757 -27.88220 -27.28623 -25.59881 -24.12733 -23.32456 -22.19115 -20.94320 -20.40789 -18.85566 -17.98090 -17.55117 -16.72806 -16.52269 -15.95305 -15.75586 -15.67790 -15.36337 -14.97545 -14.89978 -14.61317 -14.33406 -13.92028 -13.73868 -13.71960 -13.49378 -13.20621 -12.98892 -12.88175 -12.80942 -12.77564 -12.65163 -12.30505 -11.85728 -11.70790 -11.66214 -11.25950 -11.07091 -11.05072 -11.00119 -10.69603 -10.49510 -9.84869 -9.53608 -9.40956 -9.02421 -8.96732 -8.50832 -8.48817 -6.90762 -6.27869 -3.99564 0.92176 0.96459 2.71032 2.76369 2.97933 3.22145 3.33489 3.38605 3.51357 3.66007 4.06281 4.19096 4.30435 4.33970 4.36673 4.39614 4.45155 4.52730 4.59957 4.75637 4.78297 4.92115 4.94645 4.99116 5.11176 5.14353 5.17700 5.21748 5.30301 5.33297 5.51653 5.53928 5.60916 5.62510 5.68401 5.79157 5.84054 5.94012 6.03902 6.16190 6.32637 6.49540 7.00924 7.20925 7.62765 7.95232 8.43008 8.49554 9.18328 10.81381 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.026514 B = 0.001727 C = 0.001666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.800847 B =16213.483645 C =16802.980961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.076 3.924 3 C -0.149 4.149 4 O -0.311 6.311 5 C 0.134 3.866 6 C -0.150 4.150 7 C -0.067 4.067 8 C -0.153 4.153 9 C 0.144 3.856 10 H 0.114 0.886 11 O -0.551 6.551 12 C 0.095 3.905 13 N -0.732 5.732 14 C 0.530 3.470 15 O -0.521 6.521 16 C -0.123 4.123 17 S -0.143 6.143 18 C -0.522 4.522 19 H 0.088 0.912 20 C 0.096 3.904 21 N -0.880 5.880 22 Si 0.857 3.143 23 H -0.267 1.267 24 H -0.274 1.274 25 H -0.235 1.235 26 C -0.065 4.065 27 C -0.208 4.208 28 H 0.068 0.932 29 H 0.072 0.928 30 H 0.064 0.936 31 H 0.074 0.926 32 H 0.065 0.935 33 H 0.077 0.923 34 H 0.067 0.933 35 H 0.132 0.868 36 H 0.129 0.871 37 H 0.377 0.623 38 H 0.070 0.930 39 H 0.076 0.924 40 H 0.404 0.596 41 H 0.097 0.903 42 H 0.098 0.902 43 H 0.271 0.729 44 H 0.128 0.872 45 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.870 32.566 -7.786 34.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.020 3.980 3 C -0.206 4.206 4 O -0.225 6.225 5 C 0.089 3.911 6 C -0.168 4.168 7 C -0.085 4.085 8 C -0.154 4.154 9 C 0.084 3.916 10 H 0.131 0.869 11 O -0.357 6.357 12 C -0.030 4.030 13 N -0.387 5.387 14 C 0.316 3.684 15 O -0.396 6.396 16 C -0.274 4.274 17 S 0.084 5.916 18 C -0.669 4.669 19 H 0.106 0.894 20 C -0.113 4.113 21 N -0.517 5.517 22 Si 0.682 3.318 23 H -0.192 1.192 24 H -0.199 1.199 25 H -0.159 1.159 26 C -0.083 4.083 27 C -0.227 4.227 28 H 0.087 0.913 29 H 0.091 0.909 30 H 0.083 0.917 31 H 0.092 0.908 32 H 0.084 0.916 33 H 0.096 0.904 34 H 0.086 0.914 35 H 0.150 0.850 36 H 0.147 0.853 37 H 0.225 0.775 38 H 0.088 0.912 39 H 0.094 0.906 40 H 0.239 0.761 41 H 0.115 0.885 42 H 0.116 0.884 43 H 0.080 0.920 44 H 0.146 0.854 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 8.399 33.129 -7.265 34.941 hybrid contribution 0.464 -0.644 -0.202 0.819 sum 8.863 32.485 -7.467 34.491 Atomic orbital electron populations 1.22404 0.94865 1.03346 1.03328 1.22466 0.94488 0.93737 0.87297 1.21860 1.02147 0.93422 1.03193 1.86130 1.81041 1.16387 1.38939 1.19030 0.94986 0.82647 0.94443 1.20396 1.03953 0.93569 0.98903 1.20688 0.97473 0.93297 0.97077 1.20252 1.03408 0.95988 0.95785 1.20958 0.84097 0.88528 0.97986 0.86857 1.86630 1.39251 1.81559 1.28243 1.21971 0.98464 0.80977 1.01577 1.45853 1.26453 1.05745 1.60647 1.20303 0.81787 0.88840 0.77447 1.90702 1.31383 1.75333 1.42202 1.23274 1.05363 0.93093 1.05679 1.84777 1.28237 1.04641 1.73985 1.22326 1.12886 0.88322 1.43377 0.89362 1.24709 0.97811 0.94033 0.94724 1.69937 1.37707 0.99374 1.44679 0.86734 0.83573 0.80648 0.80893 1.19229 1.19941 1.15934 1.20790 0.96389 0.93276 0.97855 1.21273 1.07006 0.95410 0.99001 0.91292 0.90882 0.91658 0.90821 0.91608 0.90417 0.91372 0.85013 0.85324 0.77470 0.91172 0.90561 0.76107 0.88467 0.88367 0.91953 0.85407 0.85126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.94 9.17 37.16 0.34 -0.60 16 2 C 0.08 0.44 2.85 -26.73 -0.08 0.37 16 3 C -0.15 -0.64 9.56 37.16 0.36 -0.28 16 4 O -0.31 -2.66 9.80 -19.43 -0.19 -2.85 16 5 C 0.13 1.19 6.60 -39.22 -0.26 0.93 16 6 C -0.15 -1.27 9.99 -39.43 -0.39 -1.66 16 7 C -0.07 -0.53 9.32 -39.60 -0.37 -0.90 16 8 C -0.15 -1.26 5.01 -104.60 -0.52 -1.79 16 9 C 0.14 1.18 3.30 -27.88 -0.09 1.09 16 10 H 0.11 0.86 8.05 -51.93 -0.42 0.44 16 11 O -0.55 -4.70 12.88 -35.23 -0.45 -5.16 16 12 C 0.09 1.02 5.32 -4.04 -0.02 1.00 16 13 N -0.73 -9.28 5.45 -60.30 -0.33 -9.60 16 14 C 0.53 9.43 7.85 -10.99 -0.09 9.35 16 15 O -0.52 -11.30 15.86 5.55 0.09 -11.21 16 16 C -0.12 -2.40 6.16 36.01 0.22 -2.18 16 17 S -0.14 -3.64 18.55 -107.50 -1.99 -5.64 16 18 C -0.52 -15.11 10.04 30.94 0.31 -14.80 16 19 H 0.09 2.66 8.03 -52.49 -0.42 2.24 16 20 C 0.10 2.82 5.50 -17.43 -0.10 2.72 16 21 N -0.88 -26.66 13.97 55.49 0.78 -25.89 16 22 Si 0.86 21.89 27.74 -169.99 -4.72 17.17 16 23 H -0.27 -6.75 7.11 56.52 0.40 -6.34 16 24 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 25 H -0.24 -6.01 6.74 56.52 0.38 -5.63 16 26 C -0.06 -0.51 9.67 -39.61 -0.38 -0.89 16 27 C -0.21 -1.64 8.24 -39.43 -0.32 -1.96 16 28 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.07 0.26 8.14 -51.93 -0.42 -0.17 16 30 H 0.06 0.39 6.91 -51.93 -0.36 0.03 16 31 H 0.07 0.37 6.32 -51.93 -0.33 0.05 16 32 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 34 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 35 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 36 H 0.13 0.74 6.61 -52.49 -0.35 0.39 16 37 H 0.38 2.25 7.39 45.56 0.34 2.59 16 38 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.40 4.24 8.35 -40.82 -0.34 3.90 16 41 H 0.10 1.76 8.14 -51.91 -0.42 1.33 16 42 H 0.10 1.78 8.14 -51.92 -0.42 1.36 16 43 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 44 H 0.13 0.79 8.06 -52.48 -0.42 0.36 16 45 H 0.13 0.80 5.43 -52.49 -0.28 0.51 16 LS Contribution 388.53 15.07 5.86 5.86 Total: -1.00 -35.74 388.53 -8.33 -44.07 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: -5.97 Total: 2.88 kcal Atomic # 6 Polarization: -8.23 SS G_CDS: -1.40 Total: -9.63 kcal Atomic # 7 Polarization: -35.94 SS G_CDS: 0.45 Total: -35.49 kcal Atomic # 8 Polarization: -18.67 SS G_CDS: -0.56 Total: -19.22 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -4.72 Total: 17.17 kcal Atomic # 16 Polarization: -3.64 SS G_CDS: -1.99 Total: -5.64 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -35.74 -8.33 -44.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157396328.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.482 kcal (2) G-P(sol) polarization free energy of solvation -35.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds