Wall clock time and date at job start Tue Mar 31 2020 23:20:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47272 * 2 1 4 4 O 1.42901 * 109.46992 * 119.99809 * 2 1 3 5 5 C 1.35902 * 117.00142 * 84.91818 * 4 2 1 6 6 C 1.38727 * 120.05728 * 174.25241 * 5 4 2 7 7 C 1.38149 * 119.94462 * 179.70211 * 6 5 4 8 8 C 1.38268 * 120.05254 * 0.59386 * 7 6 5 9 9 C 1.50702 * 119.94433 * 179.70045 * 8 7 6 10 10 H 1.08995 * 109.46889 * 204.98242 * 9 8 7 11 11 O 1.42898 * 109.47125 * 324.98192 * 9 8 7 12 12 C 1.53003 * 109.46814 * 84.98113 * 9 8 7 13 13 N 1.46494 * 109.46882 * 180.02562 * 12 9 8 14 14 C 1.34775 * 120.00166 * 179.97438 * 13 12 9 15 15 O 1.21283 * 119.99893 * 0.02562 * 14 13 12 16 16 C 1.50702 * 120.00478 * 179.97438 * 14 13 12 17 17 S 1.80998 * 109.47331 * 180.02562 * 16 14 13 18 18 C 1.76200 * 99.99997 * 180.02562 * 17 16 14 19 19 H 1.08001 * 120.00088 * 359.97438 * 18 17 16 20 20 C 1.38801 * 120.00074 * 179.97438 * 18 17 16 21 21 N 1.31628 * 120.00097 * 179.97438 * 20 18 17 22 22 Si 1.86795 * 119.99933 * 0.02562 * 20 18 17 23 23 H 1.48496 * 109.47243 * 89.99645 * 22 20 18 24 24 H 1.48497 * 109.47079 * 209.99880 * 22 20 18 25 25 H 1.48502 * 109.47107 * 330.00069 * 22 20 18 26 26 C 1.38268 * 120.10944 * 359.68411 * 8 7 6 27 27 C 1.38143 * 120.05934 * 0.02562 * 26 8 7 28 28 H 1.09004 * 109.47536 * 300.00606 * 1 2 3 29 29 H 1.09004 * 109.46585 * 60.00414 * 1 2 3 30 30 H 1.09000 * 109.47230 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47438 * 239.99916 * 2 1 3 32 32 H 1.09000 * 109.47364 * 179.97438 * 3 2 1 33 33 H 1.08996 * 109.47199 * 299.99947 * 3 2 1 34 34 H 1.09000 * 109.46958 * 59.99622 * 3 2 1 35 35 H 1.07997 * 120.03089 * 359.97438 * 6 5 4 36 36 H 1.08000 * 119.97373 * 180.32194 * 7 6 5 37 37 H 0.96707 * 114.00053 * 59.99676 * 11 9 8 38 38 H 1.09004 * 109.47093 * 300.00202 * 12 9 8 39 39 H 1.08998 * 109.47138 * 59.99874 * 12 9 8 40 40 H 0.96996 * 120.00176 * 359.97438 * 13 12 9 41 41 H 1.09004 * 109.46746 * 300.00169 * 16 14 13 42 42 H 1.08998 * 109.47186 * 60.00086 * 16 14 13 43 43 H 0.96996 * 120.00256 * 180.02562 * 21 20 18 44 44 H 1.08004 * 119.96786 * 180.02562 * 26 8 7 45 45 H 1.07997 * 120.02712 * 180.02562 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.1108 -2.0269 1.0986 6 6 2.6773 -2.7339 2.1491 7 6 2.7768 -4.1101 2.0799 8 6 2.3235 -4.7816 0.9595 9 6 2.4394 -6.2823 0.8837 10 1 2.4656 -6.5923 -0.1608 11 8 3.6405 -6.7007 1.5351 12 6 1.2343 -6.9224 1.5758 13 7 1.3472 -8.3811 1.5027 14 6 0.3926 -9.1592 2.0500 15 8 -0.5603 -8.6518 2.6027 16 6 0.5084 -10.6599 1.9743 17 16 -0.9171 -11.4172 2.7931 18 6 -0.5330 -13.1212 2.5622 19 1 0.3685 -13.4056 2.0398 20 6 -1.3890 -14.0981 3.0516 21 7 -1.1023 -15.3711 2.8787 22 14 -2.9485 -13.6063 3.9545 23 1 -4.0618 -13.4699 2.9813 24 1 -3.2907 -14.6486 4.9553 25 1 -2.7328 -12.3092 4.6446 26 6 1.7638 -4.0787 -0.0914 27 6 1.6566 -2.7030 -0.0245 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8899 34 1 1.6766 1.9563 0.8900 35 1 3.0362 -2.2094 3.0223 36 1 3.2129 -4.6614 2.8998 37 1 3.6861 -6.4578 2.4701 38 1 1.2081 -6.6122 2.6204 39 1 0.3181 -6.6031 1.0789 40 1 2.1091 -8.7870 1.0604 41 1 0.5341 -10.9701 0.9297 42 1 1.4248 -10.9791 2.4707 43 1 -1.7006 -16.0538 3.2204 44 1 1.4101 -4.6056 -0.9653 45 1 1.2189 -2.1545 -0.8454 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000157396328.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:20:16 Heat of formation + Delta-G solvation = -135.338419 kcal Electronic energy + Delta-G solvation = -25616.170290 eV Core-core repulsion = 21723.851910 eV Total energy + Delta-G solvation = -3892.318380 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.44779 -40.72508 -39.54536 -37.58521 -35.34725 -34.66681 -34.22977 -32.23922 -31.89447 -30.98471 -28.44367 -28.08445 -27.78031 -24.80650 -23.97841 -22.77966 -21.85845 -21.37051 -19.91234 -19.40473 -18.36014 -17.94964 -17.40284 -17.13308 -16.85048 -16.68994 -16.43052 -16.01011 -15.84368 -15.61769 -15.43971 -14.93026 -14.91111 -14.61433 -14.42421 -14.26211 -14.02871 -13.87721 -13.44074 -13.34152 -13.30250 -13.18054 -13.08701 -12.98948 -12.80532 -12.65180 -12.28634 -12.13378 -11.87086 -11.59286 -11.54781 -11.33165 -11.16726 -10.96986 -10.53392 -10.18163 -9.98550 -9.11792 -8.99218 -8.51070 -6.21977 0.32291 0.36105 0.99559 1.31732 1.47178 1.55912 1.56343 2.19439 2.22595 2.26273 2.68931 2.74606 2.87199 3.43109 3.65846 3.76185 3.78738 3.84036 3.91055 3.96475 4.00563 4.09489 4.15164 4.24416 4.35414 4.41245 4.48565 4.56354 4.66480 4.71619 4.78129 4.84487 4.84939 4.90687 5.04251 5.17128 5.22786 5.25874 5.36293 5.37900 5.55837 5.71196 5.77207 6.11998 6.44959 6.46241 6.68012 6.94099 7.18575 8.61350 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.026514 B = 0.001727 C = 0.001666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.800847 B =16213.483645 C =16802.980961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.068 3.932 3 C -0.147 4.147 4 O -0.328 6.328 5 C 0.121 3.879 6 C -0.166 4.166 7 C -0.071 4.071 8 C -0.163 4.163 9 C 0.160 3.840 10 H 0.125 0.875 11 O -0.559 6.559 12 C 0.095 3.905 13 N -0.706 5.706 14 C 0.535 3.465 15 O -0.564 6.564 16 C -0.112 4.112 17 S -0.176 6.176 18 C -0.530 4.530 19 H 0.062 0.938 20 C 0.046 3.954 21 N -0.917 5.917 22 Si 0.914 3.086 23 H -0.262 1.262 24 H -0.259 1.259 25 H -0.237 1.237 26 C -0.071 4.071 27 C -0.214 4.214 28 H 0.061 0.939 29 H 0.092 0.908 30 H 0.055 0.945 31 H 0.081 0.919 32 H 0.062 0.938 33 H 0.097 0.903 34 H 0.063 0.937 35 H 0.137 0.863 36 H 0.147 0.853 37 H 0.388 0.612 38 H 0.066 0.934 39 H 0.071 0.929 40 H 0.418 0.582 41 H 0.114 0.886 42 H 0.114 0.886 43 H 0.277 0.723 44 H 0.145 0.855 45 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.186 34.148 -8.521 36.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.013 3.987 3 C -0.204 4.204 4 O -0.242 6.242 5 C 0.076 3.924 6 C -0.185 4.185 7 C -0.089 4.089 8 C -0.164 4.164 9 C 0.101 3.899 10 H 0.143 0.857 11 O -0.367 6.367 12 C -0.029 4.029 13 N -0.360 5.360 14 C 0.321 3.679 15 O -0.443 6.443 16 C -0.263 4.263 17 S 0.051 5.949 18 C -0.678 4.678 19 H 0.080 0.920 20 C -0.159 4.159 21 N -0.555 5.555 22 Si 0.736 3.264 23 H -0.187 1.187 24 H -0.183 1.183 25 H -0.161 1.161 26 C -0.089 4.089 27 C -0.232 4.232 28 H 0.080 0.920 29 H 0.110 0.890 30 H 0.074 0.926 31 H 0.099 0.901 32 H 0.081 0.919 33 H 0.116 0.884 34 H 0.082 0.918 35 H 0.155 0.845 36 H 0.165 0.835 37 H 0.238 0.762 38 H 0.084 0.916 39 H 0.089 0.911 40 H 0.256 0.744 41 H 0.132 0.868 42 H 0.132 0.868 43 H 0.086 0.914 44 H 0.163 0.837 45 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 8.767 34.726 -8.021 36.703 hybrid contribution 0.508 -1.019 -0.054 1.140 sum 9.276 33.707 -8.074 35.880 Atomic orbital electron populations 1.22390 0.94459 1.02885 1.03920 1.22710 0.94879 0.94335 0.86791 1.21886 1.01963 0.92590 1.03966 1.86116 1.81266 1.16427 1.40414 1.19265 0.95238 0.82977 0.94937 1.20611 1.04479 0.94095 0.99300 1.20940 0.97147 0.93244 0.97587 1.20305 1.04015 0.95888 0.96182 1.20798 0.82759 0.88256 0.98105 0.85710 1.86615 1.39100 1.81647 1.29322 1.22125 0.99718 0.79292 1.01751 1.45616 1.25291 1.06469 1.58641 1.19949 0.82172 0.88201 0.77606 1.90694 1.33345 1.75703 1.44563 1.23272 1.02797 0.94218 1.05963 1.84693 1.32136 1.02662 1.75426 1.22474 1.11977 0.90549 1.42777 0.91963 1.25557 1.00798 0.94039 0.95514 1.70014 1.39170 1.00418 1.45866 0.85865 0.79890 0.80514 0.80091 1.18686 1.18315 1.16096 1.21066 0.95972 0.93434 0.98404 1.21466 1.06890 0.95644 0.99195 0.92034 0.88952 0.92598 0.90062 0.91908 0.88398 0.91833 0.84545 0.83529 0.76195 0.91593 0.91052 0.74427 0.86802 0.86826 0.91369 0.83699 0.83713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.67 9.17 71.98 0.66 -1.01 16 2 C 0.07 0.73 2.85 30.59 0.09 0.81 16 3 C -0.15 -1.09 9.56 71.98 0.69 -0.40 16 4 O -0.33 -5.50 9.80 -92.44 -0.91 -6.41 16 5 C 0.12 2.07 6.60 22.51 0.15 2.22 16 6 C -0.17 -2.71 9.99 22.37 0.22 -2.49 16 7 C -0.07 -1.02 9.32 22.26 0.21 -0.82 16 8 C -0.16 -2.38 5.01 -19.85 -0.10 -2.48 16 9 C 0.16 2.24 3.30 29.85 0.10 2.33 16 10 H 0.13 1.49 8.05 -2.39 -0.02 1.47 16 11 O -0.56 -8.03 12.88 -148.98 -1.92 -9.95 16 12 C 0.10 1.85 5.32 86.38 0.46 2.31 16 13 N -0.71 -16.19 5.45 -463.06 -2.52 -18.71 16 14 C 0.54 18.15 7.85 87.66 0.69 18.84 16 15 O -0.56 -23.96 15.86 -3.04 -0.05 -24.01 16 16 C -0.11 -4.18 6.16 71.24 0.44 -3.75 16 17 S -0.18 -8.89 18.55 -56.49 -1.05 -9.94 16 18 C -0.53 -30.97 10.04 67.95 0.68 -30.29 16 19 H 0.06 3.83 8.03 -2.91 -0.02 3.81 16 20 C 0.05 2.73 5.50 84.86 0.47 3.19 16 21 N -0.92 -55.93 13.97 21.65 0.30 -55.63 16 22 Si 0.91 45.09 27.74 68.60 1.90 47.00 16 23 H -0.26 -12.60 7.11 99.48 0.71 -11.90 16 24 H -0.26 -11.96 7.11 99.48 0.71 -11.25 16 25 H -0.24 -11.68 6.74 99.48 0.67 -11.01 16 26 C -0.07 -0.99 9.67 22.25 0.22 -0.77 16 27 C -0.21 -3.10 8.24 22.37 0.18 -2.91 16 28 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.09 0.48 8.14 -2.38 -0.02 0.46 16 30 H 0.05 0.63 6.91 -2.39 -0.02 0.61 16 31 H 0.08 0.72 6.32 -2.39 -0.02 0.70 16 32 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 33 H 0.10 0.31 8.14 -2.39 -0.02 0.30 16 34 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 35 H 0.14 1.96 8.06 -2.91 -0.02 1.93 16 36 H 0.15 1.41 6.61 -2.91 -0.02 1.39 16 37 H 0.39 3.65 7.39 -74.05 -0.55 3.10 16 38 H 0.07 1.39 8.14 -2.38 -0.02 1.37 16 39 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 40 H 0.42 7.48 8.35 -92.71 -0.77 6.70 16 41 H 0.11 3.91 8.14 -2.39 -0.02 3.89 16 42 H 0.11 3.93 8.14 -2.40 -0.02 3.91 16 43 H 0.28 15.61 8.31 -92.71 -0.77 14.84 16 44 H 0.15 1.43 8.06 -2.91 -0.02 1.41 16 45 H 0.15 1.56 5.43 -2.91 -0.02 1.54 16 Total: -1.00 -77.03 388.53 0.57 -76.46 By element: Atomic # 1 Polarization: 16.75 SS G_CDS: -0.34 Total: 16.41 kcal Atomic # 6 Polarization: -20.36 SS G_CDS: 5.15 Total: -15.21 kcal Atomic # 7 Polarization: -72.12 SS G_CDS: -2.22 Total: -74.34 kcal Atomic # 8 Polarization: -37.49 SS G_CDS: -2.87 Total: -40.36 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 1.90 Total: 47.00 kcal Atomic # 16 Polarization: -8.89 SS G_CDS: -1.05 Total: -9.94 kcal Total: -77.03 0.57 -76.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157396328.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.882 kcal (2) G-P(sol) polarization free energy of solvation -77.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds