Wall clock time and date at job start Tue Mar 31 2020 22:21:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.47156 * 2 1 4 4 N 1.46495 * 109.47099 * 179.97438 * 3 2 1 5 5 C 1.36879 * 120.00097 * 269.99740 * 4 3 2 6 6 H 1.08004 * 119.99537 * 22.96116 * 5 4 3 7 7 C 1.39039 * 120.00082 * 202.95628 * 5 4 3 8 8 N 1.31362 * 120.00068 * 14.92487 * 7 5 4 9 9 Si 1.86800 * 120.00168 * 194.92524 * 7 5 4 10 10 H 1.48498 * 109.47349 * 94.98430 * 9 7 5 11 11 H 1.48499 * 109.47390 * 214.99054 * 9 7 5 12 12 H 1.48502 * 109.46923 * 334.98938 * 9 7 5 13 13 C 1.34777 * 120.00280 * 90.00209 * 4 3 2 14 14 O 1.21595 * 119.99963 * 233.55111 * 13 4 3 15 15 C 1.47730 * 119.99867 * 53.54408 * 13 4 3 16 16 C 1.39663 * 120.14830 * 24.46966 * 15 13 4 17 17 C 1.37913 * 119.84536 * 179.97438 * 16 15 13 18 18 S 1.76200 * 119.92568 * 179.97438 * 17 16 15 19 19 C 1.81411 * 104.45028 * 265.06100 * 18 17 16 20 20 O 1.42101 * 104.27606 * 21.13233 * 18 17 16 21 21 O 1.42103 * 104.27785 * 148.99153 * 18 17 16 22 22 C 1.38404 * 120.15390 * 359.97438 * 17 16 15 23 23 C 1.38356 * 120.30173 * 0.02562 * 22 17 16 24 24 C 1.50702 * 119.92571 * 180.02562 * 23 22 17 25 25 C 1.37962 * 120.14852 * 0.27895 * 23 22 17 26 26 C 1.50701 * 120.07171 * 179.70493 * 25 23 22 27 27 H 1.09000 * 109.46909 * 60.00066 * 1 2 3 28 28 H 1.09003 * 109.47019 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47108 * 300.00047 * 1 2 3 30 30 H 1.08998 * 109.47436 * 240.00568 * 2 1 3 31 31 H 1.09002 * 109.47373 * 119.99680 * 2 1 3 32 32 H 1.09004 * 109.46731 * 59.99643 * 3 2 1 33 33 H 1.09002 * 109.46719 * 300.00081 * 3 2 1 34 34 H 0.97005 * 119.99976 * 184.96915 * 8 7 5 35 35 H 1.07997 * 120.07908 * 359.97438 * 16 15 13 36 36 H 1.08998 * 109.46665 * 64.93279 * 19 18 17 37 37 H 1.08994 * 109.46752 * 184.93463 * 19 18 17 38 38 H 1.09003 * 109.46943 * 304.93453 * 19 18 17 39 39 H 1.07989 * 119.85039 * 179.97438 * 22 17 16 40 40 H 1.08996 * 109.47254 * 89.99739 * 24 23 22 41 41 H 1.09003 * 109.47103 * 210.00283 * 24 23 22 42 42 H 1.09002 * 109.46892 * 329.99844 * 24 23 22 43 43 H 1.09000 * 109.47630 * 94.17269 * 26 25 23 44 44 H 1.09006 * 109.46728 * 214.17369 * 26 25 23 45 45 H 1.09005 * 109.47287 * 334.16805 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1889 1.4428 1.1863 6 1 3.7126 1.0780 2.0844 7 6 5.4967 1.9124 1.2344 8 7 5.9782 2.6182 0.2367 9 14 6.5690 1.5397 2.7179 10 1 7.3881 0.3313 2.4456 11 1 7.4637 2.6944 2.9847 12 1 5.7074 1.2969 3.9029 13 6 4.1794 1.4424 -1.1663 14 8 5.0253 0.5953 -1.3795 15 6 3.8908 2.4713 -2.1863 16 6 3.3431 3.6993 -1.8086 17 6 3.0766 4.6555 -2.7659 18 16 2.3849 6.2052 -2.2918 19 6 0.5980 5.9925 -2.5212 20 8 2.7001 6.3219 -0.9111 21 8 2.9035 7.1258 -3.2420 22 6 3.3513 4.4008 -4.0983 23 6 3.8940 3.1865 -4.4795 24 6 4.1903 2.9184 -5.9325 25 6 4.1596 2.2187 -3.5329 26 6 4.7445 0.8941 -3.9508 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8934 -0.5137 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.6766 1.9564 0.8900 33 1 1.6766 1.9563 -0.8900 34 1 6.9110 2.8845 0.2367 35 1 3.1286 3.8995 -0.7692 36 1 0.2296 5.2388 -1.8253 37 1 0.0923 6.9394 -2.3326 38 1 0.3986 5.6714 -3.5436 39 1 3.1404 5.1530 -4.8439 40 1 5.2070 3.2380 -6.1610 41 1 4.0910 1.8515 -6.1327 42 1 3.4869 3.4718 -6.5548 43 1 5.8300 0.9308 -3.8582 44 1 4.3516 0.1050 -3.3096 45 1 4.4749 0.6885 -4.9867 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000158091707.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:52 Heat of formation + Delta-G solvation = -69.141510 kcal Electronic energy + Delta-G solvation = -28956.267709 eV Core-core repulsion = 25066.819842 eV Total energy + Delta-G solvation = -3889.447867 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 2.65 seconds Orbital eigenvalues (eV) -39.71921 -37.82649 -36.88596 -35.73608 -35.16630 -33.29840 -32.89576 -31.70731 -30.92651 -29.53580 -27.59348 -26.38476 -25.89557 -24.64785 -22.49616 -21.29358 -20.93378 -19.52397 -18.48656 -17.40137 -16.47030 -16.10064 -16.06757 -15.45408 -15.05592 -14.92023 -14.74935 -14.45934 -14.06073 -13.72101 -13.62885 -13.35760 -13.21821 -13.20424 -12.84626 -12.63155 -12.41113 -11.93532 -11.87672 -11.82525 -11.78422 -11.64044 -11.56904 -11.51034 -11.39700 -11.16154 -11.07655 -10.92501 -10.88957 -10.80311 -10.48083 -10.27670 -10.17566 -10.11115 -9.00235 -8.56633 -8.38964 -8.25620 -7.38590 -6.20800 -3.66455 0.22151 1.19323 1.58896 3.05352 3.27297 3.36356 3.38540 3.48805 4.05449 4.22467 4.26706 4.42678 4.73475 4.78213 4.89237 5.06667 5.22255 5.28800 5.34277 5.38519 5.44285 5.55164 5.56404 5.58224 5.69040 5.74234 5.87528 5.93122 6.03646 6.06575 6.19604 6.20869 6.23587 6.27676 6.32114 6.43205 6.47768 6.60514 6.65285 6.70864 6.86535 7.00942 7.28561 7.53979 8.09095 8.96632 9.23554 9.51744 9.99848 10.91741 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.009409 B = 0.005021 C = 0.004784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2975.291753 B = 5574.832242 C = 5851.354904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.140 4.140 3 C 0.121 3.879 4 N -0.519 5.519 5 C -0.300 4.300 6 H 0.085 0.915 7 C 0.034 3.966 8 N -0.866 5.866 9 Si 0.919 3.081 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.273 1.273 13 C 0.592 3.408 14 O -0.524 6.524 15 C -0.106 4.106 16 C 0.028 3.972 17 C -0.675 4.675 18 S 2.498 3.502 19 C -0.653 4.653 20 O -0.930 6.930 21 O -0.946 6.946 22 C -0.026 4.026 23 C -0.125 4.125 24 C -0.111 4.111 25 C 0.002 3.998 26 C -0.116 4.116 27 H 0.049 0.951 28 H 0.048 0.952 29 H 0.053 0.947 30 H 0.055 0.945 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.048 0.952 34 H 0.270 0.730 35 H 0.149 0.851 36 H 0.133 0.867 37 H 0.127 0.873 38 H 0.129 0.871 39 H 0.132 0.868 40 H 0.069 0.931 41 H 0.071 0.929 42 H 0.063 0.937 43 H 0.081 0.919 44 H 0.083 0.917 45 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.156 2.575 -9.396 15.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.180 4.180 3 C -0.004 4.004 4 N -0.244 5.244 5 C -0.426 4.426 6 H 0.102 0.898 7 C -0.171 4.171 8 N -0.505 5.505 9 Si 0.746 3.254 10 H -0.207 1.207 11 H -0.212 1.212 12 H -0.198 1.198 13 C 0.383 3.617 14 O -0.401 6.401 15 C -0.111 4.111 16 C 0.008 3.992 17 C -0.763 4.763 18 S 2.678 3.322 19 C -0.803 4.803 20 O -0.928 6.928 21 O -0.943 6.943 22 C -0.045 4.045 23 C -0.126 4.126 24 C -0.168 4.168 25 C 0.000 4.000 26 C -0.172 4.172 27 H 0.068 0.932 28 H 0.067 0.933 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.067 0.933 34 H 0.081 0.919 35 H 0.166 0.834 36 H 0.151 0.849 37 H 0.146 0.854 38 H 0.148 0.852 39 H 0.150 0.850 40 H 0.087 0.913 41 H 0.089 0.911 42 H 0.082 0.918 43 H 0.099 0.901 44 H 0.101 0.899 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -11.103 2.994 -9.216 14.737 hybrid contribution 0.431 -0.702 0.504 0.966 sum -10.672 2.292 -8.712 13.966 Atomic orbital electron populations 1.21712 0.96426 1.00989 1.01317 1.21993 0.94470 0.99097 1.02396 1.21322 0.83325 0.95017 1.00768 1.42682 1.02471 1.74793 1.04473 1.19206 0.97588 1.39646 0.86178 0.89767 1.25118 0.98776 0.94707 0.98453 1.69457 1.14899 1.32988 1.33169 0.86046 0.80217 0.77873 0.81247 1.20747 1.21197 1.19780 1.17135 0.81463 0.82871 0.80207 1.90497 1.35579 1.36898 1.77158 1.20632 0.99981 0.96806 0.93714 1.21145 0.88845 0.90358 0.98867 1.30197 1.22085 1.22489 1.01535 1.05122 0.77510 0.74715 0.74851 1.30263 1.25977 1.11837 1.12176 1.93623 1.82044 1.85381 1.31711 1.93551 1.76804 1.60480 1.63479 1.20636 0.94580 0.95715 0.93591 1.19674 1.02810 0.94209 0.95898 1.20807 1.01930 1.02481 0.91573 1.20209 0.92043 0.95628 0.92092 1.21007 1.01880 0.94092 1.00245 0.93212 0.93252 0.92828 0.92652 0.91569 0.91585 0.93331 0.91875 0.83358 0.84852 0.85427 0.85218 0.85017 0.91269 0.91062 0.91798 0.90089 0.89875 0.92330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 41. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 9.91 37.16 0.37 -1.48 16 2 C -0.14 -2.34 6.26 -26.73 -0.17 -2.51 16 3 C 0.12 2.28 5.03 -4.04 -0.02 2.26 16 4 N -0.52 -12.56 2.12 -115.92 -0.25 -12.81 16 5 C -0.30 -7.95 9.52 -15.00 -0.14 -8.09 16 6 H 0.08 2.13 7.88 -52.48 -0.41 1.72 16 7 C 0.03 0.95 4.99 -17.46 -0.09 0.86 16 8 N -0.87 -25.10 11.28 55.50 0.63 -24.47 16 9 Si 0.92 21.79 29.58 -169.99 -5.03 16.76 16 10 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 12 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 13 C 0.59 14.84 3.92 -12.38 -0.05 14.79 16 14 O -0.52 -14.57 14.03 5.28 0.07 -14.50 16 15 C -0.11 -2.32 5.30 -104.97 -0.56 -2.88 16 16 C 0.03 0.56 7.85 -39.17 -0.31 0.25 16 17 C -0.68 -11.27 5.65 -39.64 -0.22 -11.49 16 18 S 2.50 35.08 5.79 -107.50 -0.62 34.46 16 19 C -0.65 -5.41 10.80 101.05 1.09 -4.32 16 20 O -0.93 -17.00 16.99 -57.54 -0.98 -17.98 16 21 O -0.95 -15.26 17.26 -57.54 -0.99 -16.25 16 22 C -0.03 -0.39 9.12 -39.48 -0.36 -0.75 16 23 C -0.12 -1.98 5.87 -104.68 -0.61 -2.59 16 24 C -0.11 -1.31 9.60 36.01 0.35 -0.96 16 25 C 0.00 0.03 5.91 -104.21 -0.62 -0.59 16 26 C -0.12 -2.03 8.31 36.01 0.30 -1.73 16 27 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 31 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 32 H 0.07 1.19 8.04 -51.93 -0.42 0.77 16 33 H 0.05 0.83 6.62 -51.93 -0.34 0.49 16 34 H 0.27 7.67 8.31 -40.82 -0.34 7.33 16 35 H 0.15 3.22 6.91 -52.49 -0.36 2.86 16 36 H 0.13 0.97 8.14 -51.92 -0.42 0.55 16 37 H 0.13 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.13 0.81 8.14 -51.92 -0.42 0.39 16 39 H 0.13 1.61 7.69 -52.49 -0.40 1.21 16 40 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.07 0.76 5.88 -51.93 -0.31 0.46 16 42 H 0.06 0.61 8.08 -51.93 -0.42 0.19 16 43 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 44 H 0.08 1.61 6.32 -51.93 -0.33 1.28 16 45 H 0.06 0.79 5.78 -51.93 -0.30 0.49 16 LS Contribution 379.35 15.07 5.72 5.72 Total: -1.00 -36.38 379.35 -9.15 -45.53 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: -6.66 Total: 2.78 kcal Atomic # 6 Polarization: -18.21 SS G_CDS: -1.04 Total: -19.25 kcal Atomic # 7 Polarization: -37.66 SS G_CDS: 0.38 Total: -37.28 kcal Atomic # 8 Polarization: -46.82 SS G_CDS: -1.90 Total: -48.72 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.03 Total: 16.76 kcal Atomic # 16 Polarization: 35.08 SS G_CDS: -0.62 Total: 34.46 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -36.38 -9.15 -45.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158091707.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.615 kcal (2) G-P(sol) polarization free energy of solvation -36.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.65 seconds