Wall clock time and date at job start Tue Mar 31 2020 22:21:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.47156 * 2 1 4 4 N 1.46495 * 109.47099 * 179.97438 * 3 2 1 5 5 C 1.36879 * 120.00097 * 269.99740 * 4 3 2 6 6 H 1.08004 * 119.99537 * 22.96116 * 5 4 3 7 7 C 1.39039 * 120.00082 * 202.95628 * 5 4 3 8 8 N 1.31362 * 120.00068 * 14.92487 * 7 5 4 9 9 Si 1.86800 * 120.00168 * 194.92524 * 7 5 4 10 10 H 1.48498 * 109.47349 * 94.98430 * 9 7 5 11 11 H 1.48499 * 109.47390 * 214.99054 * 9 7 5 12 12 H 1.48502 * 109.46923 * 334.98938 * 9 7 5 13 13 C 1.34777 * 120.00280 * 90.00209 * 4 3 2 14 14 O 1.21595 * 119.99963 * 233.55111 * 13 4 3 15 15 C 1.47730 * 119.99867 * 53.54408 * 13 4 3 16 16 C 1.39663 * 120.14830 * 24.46966 * 15 13 4 17 17 C 1.37913 * 119.84536 * 179.97438 * 16 15 13 18 18 S 1.76200 * 119.92568 * 179.97438 * 17 16 15 19 19 C 1.81411 * 104.45028 * 265.06100 * 18 17 16 20 20 O 1.42101 * 104.27606 * 21.13233 * 18 17 16 21 21 O 1.42103 * 104.27785 * 148.99153 * 18 17 16 22 22 C 1.38404 * 120.15390 * 359.97438 * 17 16 15 23 23 C 1.38356 * 120.30173 * 0.02562 * 22 17 16 24 24 C 1.50702 * 119.92571 * 180.02562 * 23 22 17 25 25 C 1.37962 * 120.14852 * 0.27895 * 23 22 17 26 26 C 1.50701 * 120.07171 * 179.70493 * 25 23 22 27 27 H 1.09000 * 109.46909 * 60.00066 * 1 2 3 28 28 H 1.09003 * 109.47019 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47108 * 300.00047 * 1 2 3 30 30 H 1.08998 * 109.47436 * 240.00568 * 2 1 3 31 31 H 1.09002 * 109.47373 * 119.99680 * 2 1 3 32 32 H 1.09004 * 109.46731 * 59.99643 * 3 2 1 33 33 H 1.09002 * 109.46719 * 300.00081 * 3 2 1 34 34 H 0.97005 * 119.99976 * 184.96915 * 8 7 5 35 35 H 1.07997 * 120.07908 * 359.97438 * 16 15 13 36 36 H 1.08998 * 109.46665 * 64.93279 * 19 18 17 37 37 H 1.08994 * 109.46752 * 184.93463 * 19 18 17 38 38 H 1.09003 * 109.46943 * 304.93453 * 19 18 17 39 39 H 1.07989 * 119.85039 * 179.97438 * 22 17 16 40 40 H 1.08996 * 109.47254 * 89.99739 * 24 23 22 41 41 H 1.09003 * 109.47103 * 210.00283 * 24 23 22 42 42 H 1.09002 * 109.46892 * 329.99844 * 24 23 22 43 43 H 1.09000 * 109.47630 * 94.17269 * 26 25 23 44 44 H 1.09006 * 109.46728 * 214.17369 * 26 25 23 45 45 H 1.09005 * 109.47287 * 334.16805 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1889 1.4428 1.1863 6 1 3.7126 1.0780 2.0844 7 6 5.4967 1.9124 1.2344 8 7 5.9782 2.6182 0.2367 9 14 6.5690 1.5397 2.7179 10 1 7.3881 0.3313 2.4456 11 1 7.4637 2.6944 2.9847 12 1 5.7074 1.2969 3.9029 13 6 4.1794 1.4424 -1.1663 14 8 5.0253 0.5953 -1.3795 15 6 3.8908 2.4713 -2.1863 16 6 3.3431 3.6993 -1.8086 17 6 3.0766 4.6555 -2.7659 18 16 2.3849 6.2052 -2.2918 19 6 0.5980 5.9925 -2.5212 20 8 2.7001 6.3219 -0.9111 21 8 2.9035 7.1258 -3.2420 22 6 3.3513 4.4008 -4.0983 23 6 3.8940 3.1865 -4.4795 24 6 4.1903 2.9184 -5.9325 25 6 4.1596 2.2187 -3.5329 26 6 4.7445 0.8941 -3.9508 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8934 -0.5137 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.6766 1.9564 0.8900 33 1 1.6766 1.9563 -0.8900 34 1 6.9110 2.8845 0.2367 35 1 3.1286 3.8995 -0.7692 36 1 0.2296 5.2388 -1.8253 37 1 0.0923 6.9394 -2.3326 38 1 0.3986 5.6714 -3.5436 39 1 3.1404 5.1530 -4.8439 40 1 5.2070 3.2380 -6.1610 41 1 4.0910 1.8515 -6.1327 42 1 3.4869 3.4718 -6.5548 43 1 5.8300 0.9308 -3.8582 44 1 4.3516 0.1050 -3.3096 45 1 4.4749 0.6885 -4.9867 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000158091707.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:50 Heat of formation + Delta-G solvation = -94.529293 kcal Electronic energy + Delta-G solvation = -28957.368606 eV Core-core repulsion = 25066.819842 eV Total energy + Delta-G solvation = -3890.548763 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.27618 -39.46103 -38.09656 -36.97084 -36.88440 -34.76147 -34.49699 -33.17947 -32.61039 -30.28052 -28.94838 -27.61798 -27.52955 -26.33582 -24.05803 -22.64273 -22.30644 -21.23499 -19.69596 -18.94601 -18.06850 -17.56332 -17.15449 -17.07917 -16.54054 -16.37629 -16.20762 -16.04809 -15.52439 -15.33119 -15.18329 -14.52025 -14.13832 -13.99678 -13.97851 -13.87994 -13.56221 -13.51651 -13.36801 -13.14027 -13.10848 -13.04453 -12.97092 -12.90263 -12.83821 -12.67858 -12.62847 -12.46674 -12.33308 -12.21830 -12.02181 -11.93310 -11.56697 -11.45422 -10.97862 -10.31039 -9.95599 -9.64561 -9.31932 -8.27901 -5.75567 -0.80830 -0.19621 0.15395 1.35162 1.40174 1.48759 1.89266 1.95821 2.33343 2.66219 3.06445 3.11105 3.20531 3.27803 3.77938 3.93968 3.97079 4.10017 4.13853 4.16473 4.25795 4.28795 4.35058 4.49237 4.56667 4.64995 4.69245 4.70522 4.79770 4.84650 4.90842 4.93250 4.98767 5.07695 5.09150 5.14924 5.20206 5.21591 5.30795 5.40845 5.42269 5.50636 5.60762 5.92387 6.06398 6.93881 7.30464 7.62098 8.05107 8.83320 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.009409 B = 0.005021 C = 0.004784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2975.291753 B = 5574.832242 C = 5851.354904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.133 4.133 3 C 0.117 3.883 4 N -0.538 5.538 5 C -0.307 4.307 6 H 0.090 0.910 7 C -0.023 4.023 8 N -0.902 5.902 9 Si 0.978 3.022 10 H -0.291 1.291 11 H -0.288 1.288 12 H -0.252 1.252 13 C 0.593 3.407 14 O -0.570 6.570 15 C -0.140 4.140 16 C 0.010 3.990 17 C -0.675 4.675 18 S 2.495 3.505 19 C -0.615 4.615 20 O -0.986 6.986 21 O -0.971 6.971 22 C -0.018 4.018 23 C -0.118 4.118 24 C -0.111 4.111 25 C -0.018 4.018 26 C -0.107 4.107 27 H 0.065 0.935 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.037 0.963 31 H 0.048 0.952 32 H 0.072 0.928 33 H 0.066 0.934 34 H 0.260 0.740 35 H 0.122 0.878 36 H 0.150 0.850 37 H 0.161 0.839 38 H 0.165 0.835 39 H 0.173 0.827 40 H 0.075 0.925 41 H 0.082 0.918 42 H 0.097 0.903 43 H 0.059 0.941 44 H 0.055 0.945 45 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.455 3.721 -11.758 19.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.172 4.172 3 C -0.007 4.007 4 N -0.264 5.264 5 C -0.434 4.434 6 H 0.108 0.892 7 C -0.223 4.223 8 N -0.543 5.543 9 Si 0.804 3.196 10 H -0.217 1.217 11 H -0.214 1.214 12 H -0.175 1.175 13 C 0.386 3.614 14 O -0.450 6.450 15 C -0.145 4.145 16 C -0.010 4.010 17 C -0.760 4.760 18 S 2.679 3.321 19 C -0.769 4.769 20 O -0.983 6.983 21 O -0.968 6.968 22 C -0.037 4.037 23 C -0.119 4.119 24 C -0.167 4.167 25 C -0.020 4.020 26 C -0.163 4.163 27 H 0.084 0.916 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.056 0.944 31 H 0.066 0.934 32 H 0.090 0.910 33 H 0.084 0.916 34 H 0.070 0.930 35 H 0.140 0.860 36 H 0.168 0.832 37 H 0.179 0.821 38 H 0.183 0.817 39 H 0.190 0.810 40 H 0.094 0.906 41 H 0.100 0.900 42 H 0.116 0.884 43 H 0.078 0.922 44 H 0.073 0.927 45 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -14.383 4.118 -11.562 18.908 hybrid contribution 1.284 -1.002 1.115 1.973 sum -13.099 3.117 -10.447 17.043 Atomic orbital electron populations 1.21644 0.92574 1.02487 1.02704 1.21902 0.97705 0.96964 1.00661 1.21559 0.80503 0.96768 1.01856 1.42913 1.04538 1.75185 1.03776 1.19533 0.97987 1.38570 0.87344 0.89215 1.25982 1.00231 0.95063 1.01036 1.69625 1.14310 1.35091 1.35270 0.85121 0.78570 0.76871 0.79086 1.21743 1.21401 1.17537 1.17756 0.80208 0.82507 0.80939 1.90443 1.37240 1.38806 1.78536 1.20481 1.02962 0.96713 0.94342 1.20888 0.90552 0.91047 0.98505 1.30625 1.21328 1.22467 1.01555 1.05196 0.80591 0.73165 0.73166 1.29985 1.17384 1.14536 1.15023 1.93562 1.84753 1.85578 1.34456 1.93512 1.79499 1.60445 1.63329 1.21206 0.92560 0.96174 0.93719 1.20168 1.00812 0.93331 0.97550 1.20939 1.03189 1.03909 0.88712 1.20461 0.92728 0.97091 0.91673 1.20907 1.00261 0.92968 1.02184 0.91607 0.91725 0.91628 0.94373 0.93362 0.90962 0.91615 0.93024 0.86035 0.83154 0.82099 0.81688 0.80951 0.90624 0.89965 0.88421 0.92193 0.92657 0.87970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.17 9.91 71.98 0.71 -2.46 16 2 C -0.13 -4.51 6.26 30.60 0.19 -4.32 16 3 C 0.12 4.54 5.03 86.38 0.43 4.98 16 4 N -0.54 -27.50 2.12 -638.92 -1.36 -28.86 16 5 C -0.31 -17.10 9.52 84.10 0.80 -16.30 16 6 H 0.09 4.72 7.88 -2.91 -0.02 4.70 16 7 C -0.02 -1.33 4.99 84.96 0.42 -0.91 16 8 N -0.90 -55.69 11.28 21.68 0.24 -55.45 16 9 Si 0.98 46.86 29.58 68.60 2.03 48.89 16 10 H -0.29 -14.21 7.11 99.48 0.71 -13.50 16 11 H -0.29 -13.72 7.11 99.48 0.71 -13.02 16 12 H -0.25 -11.04 7.11 99.48 0.71 -10.33 16 13 C 0.59 31.57 3.92 86.75 0.34 31.91 16 14 O -0.57 -34.06 14.03 -4.01 -0.06 -34.11 16 15 C -0.14 -6.40 5.30 -20.09 -0.11 -6.51 16 16 C 0.01 0.41 7.85 22.54 0.18 0.58 16 17 C -0.67 -21.84 5.65 22.23 0.13 -21.71 16 18 S 2.50 65.82 5.79 -56.49 -0.33 65.49 16 19 C -0.61 -6.88 10.80 113.37 1.22 -5.66 16 20 O -0.99 -36.76 16.99 -127.65 -2.17 -38.93 16 21 O -0.97 -29.26 17.26 -127.65 -2.20 -31.46 16 22 C -0.02 -0.49 9.12 22.34 0.20 -0.29 16 23 C -0.12 -3.46 5.87 -19.90 -0.12 -3.57 16 24 C -0.11 -2.16 9.60 71.24 0.68 -1.47 16 25 C -0.02 -0.70 5.91 -19.60 -0.12 -0.82 16 26 C -0.11 -3.85 8.31 71.24 0.59 -3.26 16 27 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.06 1.38 8.14 -2.38 -0.02 1.36 16 30 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.07 2.66 8.04 -2.38 -0.02 2.64 16 33 H 0.07 2.29 6.62 -2.39 -0.02 2.28 16 34 H 0.26 15.82 8.31 -92.70 -0.77 15.05 16 35 H 0.12 5.65 6.91 -2.91 -0.02 5.63 16 36 H 0.15 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.16 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.16 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.17 3.34 7.69 -2.92 -0.02 3.32 16 40 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 41 H 0.08 1.42 5.88 -2.39 -0.01 1.41 16 42 H 0.10 1.28 8.08 -2.39 -0.02 1.26 16 43 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 44 H 0.05 2.27 6.32 -2.38 -0.02 2.26 16 45 H 0.10 2.63 5.78 -2.38 -0.01 2.61 16 Total: -1.00 -88.58 379.35 2.72 -85.86 By element: Atomic # 1 Polarization: 17.39 SS G_CDS: 0.99 Total: 18.39 kcal Atomic # 6 Polarization: -35.38 SS G_CDS: 5.57 Total: -29.81 kcal Atomic # 7 Polarization: -83.19 SS G_CDS: -1.11 Total: -84.31 kcal Atomic # 8 Polarization: -100.08 SS G_CDS: -4.43 Total: -104.51 kcal Atomic # 14 Polarization: 46.86 SS G_CDS: 2.03 Total: 48.89 kcal Atomic # 16 Polarization: 65.82 SS G_CDS: -0.33 Total: 65.49 kcal Total: -88.58 2.72 -85.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158091707.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.672 kcal (2) G-P(sol) polarization free energy of solvation -88.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds