Wall clock time and date at job start Tue Mar 31 2020 23:33:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.47881 * 2 1 4 4 C 1.53087 * 109.48400 * 120.02679 * 2 1 3 5 5 C 1.53185 * 109.16190 * 62.38521 * 4 2 1 6 6 N 1.46505 * 109.54146 * 176.84694 * 5 4 2 7 7 S 1.65598 * 119.99471 * 145.17753 * 6 5 4 8 8 O 1.42099 * 106.39903 * 178.26794 * 7 6 5 9 9 O 1.42100 * 106.40645 * 311.18231 * 7 6 5 10 10 C 1.76195 * 107.22046 * 64.72829 * 7 6 5 11 11 C 1.38635 * 119.74832 * 269.72892 * 10 7 6 12 12 C 1.37620 * 120.24761 * 179.72032 * 11 10 7 13 13 C 1.40713 * 119.74620 * 0.56617 * 12 11 10 14 14 C 1.41392 * 120.24737 * 179.67980 * 13 12 11 15 15 H 1.08000 * 119.99997 * 155.30901 * 14 13 12 16 16 C 1.39942 * 120.00034 * 335.31549 * 14 13 12 17 17 N 1.30825 * 120.00037 * 342.22847 * 16 14 13 18 18 Si 1.86800 * 120.00181 * 162.22697 * 16 14 13 19 19 H 1.48508 * 109.46973 * 94.66226 * 18 16 14 20 20 H 1.48500 * 109.47320 * 214.66129 * 18 16 14 21 21 H 1.48498 * 109.47019 * 334.66633 * 18 16 14 22 22 C 1.40721 * 119.50795 * 359.70886 * 13 12 11 23 23 C 1.37616 * 119.74586 * 359.97438 * 22 13 12 24 24 C 1.53176 * 109.10669 * 56.93746 * 5 4 2 25 25 C 1.53103 * 109.15827 * 303.15098 * 24 5 4 26 26 H 1.08993 * 109.40585 * 297.49453 * 25 24 5 27 27 C 1.53003 * 109.48916 * 177.50860 * 25 24 5 28 28 O 1.42900 * 109.48514 * 57.47678 * 25 24 5 29 29 H 1.08994 * 109.47398 * 299.96897 * 1 2 3 30 30 H 1.09001 * 109.47521 * 59.97917 * 1 2 3 31 31 H 1.09009 * 109.46786 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.52160 * 302.48616 * 4 2 1 33 33 H 1.08999 * 109.52377 * 182.29179 * 4 2 1 34 34 H 1.09000 * 109.54521 * 297.02681 * 5 4 2 35 35 H 0.96994 * 120.00110 * 324.90534 * 6 5 4 36 36 H 1.08002 * 119.87815 * 359.97153 * 11 10 7 37 37 H 1.08004 * 120.12655 * 180.27425 * 12 11 10 38 38 H 0.97006 * 120.00087 * 179.97438 * 17 16 14 39 39 H 1.08001 * 120.12547 * 179.97438 * 22 13 12 40 40 H 1.07998 * 119.87062 * 180.02562 * 23 22 13 41 41 H 1.09004 * 109.52206 * 62.97518 * 24 5 4 42 42 H 1.09002 * 109.51704 * 183.15652 * 24 5 4 43 43 H 1.08996 * 109.47335 * 299.96643 * 27 25 24 44 44 H 1.09006 * 109.47107 * 59.96189 * 27 25 24 45 45 H 1.08994 * 109.46843 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0406 -0.7222 1.2495 5 6 1.5760 -2.1814 1.2120 6 7 2.1229 -2.8996 2.3659 7 16 1.2346 -4.0910 3.0964 8 8 2.0452 -4.6130 4.1403 9 8 -0.0606 -3.5490 3.3154 10 6 1.0383 -5.3898 1.9221 11 6 -0.0553 -5.3874 1.0701 12 6 -0.2157 -6.3937 0.1451 13 6 0.7293 -7.4339 0.0741 14 6 0.5713 -8.4766 -0.8676 15 1 1.4328 -9.0318 -1.2082 16 6 -0.7013 -8.7893 -1.3585 17 7 -1.7674 -8.3820 -0.7189 18 14 -0.8780 -9.7881 -2.9272 19 1 -1.0380 -11.2241 -2.5842 20 1 -2.0712 -9.3226 -3.6787 21 1 0.3349 -9.6116 -3.7655 22 6 1.8324 -7.4290 0.9478 23 6 1.9760 -6.4091 1.8605 24 6 2.0752 -2.8334 -0.0810 25 6 1.5650 -2.0284 -1.2792 26 1 0.4755 -2.0551 -1.2960 27 6 2.1104 -2.6370 -2.5727 28 8 2.0067 -0.6741 -1.1664 29 1 -0.3634 0.5133 0.8902 30 1 -0.3634 0.5141 -0.8898 31 1 -0.3633 -1.0278 -0.0005 32 1 1.6419 -0.2358 2.1398 33 1 3.1298 -0.6871 1.2710 34 1 0.4870 -2.2183 1.2422 35 1 3.0068 -2.6800 2.6994 36 1 -0.7821 -4.5908 1.1298 37 1 -1.0661 -6.3875 -0.5207 38 1 -2.6496 -8.5984 -1.0594 39 1 2.5635 -8.2227 0.9023 40 1 2.8220 -6.4031 2.5317 41 1 3.1651 -2.8424 -0.0872 42 1 1.7013 -3.8556 -0.1414 43 1 3.1999 -2.6106 -2.5555 44 1 1.7733 -3.6701 -2.6585 45 1 1.7466 -2.0639 -3.4254 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000162944159.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:33:57 Heat of formation + Delta-G solvation = -124.594020 kcal Electronic energy + Delta-G solvation = -28714.101290 eV Core-core repulsion = 24822.248822 eV Total energy + Delta-G solvation = -3891.852468 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -39.97986 -37.62667 -36.53878 -35.51143 -35.14955 -34.07899 -33.33362 -31.25047 -30.30086 -29.50597 -28.53390 -26.68416 -25.83363 -22.95280 -22.10962 -21.52842 -21.16576 -19.59859 -18.79386 -17.65271 -17.18497 -16.87959 -16.27923 -16.17397 -15.54788 -15.16995 -14.83230 -14.49721 -14.16325 -14.06321 -13.83431 -13.41519 -13.23914 -12.86732 -12.58501 -12.47320 -12.23580 -12.14004 -11.94712 -11.86284 -11.65022 -11.60861 -11.51802 -11.44110 -11.32897 -11.28886 -11.23448 -11.10088 -10.97797 -10.89050 -10.48343 -10.04068 -9.79557 -9.67681 -9.51181 -9.45095 -9.07307 -7.98037 -7.74215 -7.17348 -4.83432 1.22503 2.22039 2.84711 2.86699 2.88746 2.93244 3.62322 3.65522 3.77894 4.20233 4.48273 4.61153 4.79745 4.85160 4.97509 5.03938 5.15090 5.26081 5.33201 5.35349 5.35420 5.47791 5.53337 5.77604 5.79447 5.81872 5.90956 5.98258 6.04144 6.07656 6.08108 6.17788 6.24707 6.35520 6.46897 6.64694 6.67953 6.87387 7.01180 7.26342 7.29423 7.31604 7.39101 7.59536 7.73242 7.93611 8.28167 8.47976 8.61128 9.74033 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011342 B = 0.004373 C = 0.003523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2468.135381 B = 6401.576225 C = 7946.073454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.092 3.908 3 H 0.102 0.898 4 C -0.153 4.153 5 C 0.155 3.845 6 N -1.121 6.121 7 S 2.690 3.310 8 O -0.986 6.986 9 O -0.984 6.984 10 C -0.786 4.786 11 C -0.016 4.016 12 C -0.182 4.182 13 C 0.141 3.859 14 C -0.435 4.435 15 H 0.087 0.913 16 C 0.073 3.927 17 N -0.764 5.764 18 Si 0.915 3.085 19 H -0.266 1.266 20 H -0.271 1.271 21 H -0.256 1.256 22 C -0.238 4.238 23 C 0.004 3.996 24 C -0.173 4.173 25 C 0.086 3.914 26 H 0.064 0.936 27 C -0.144 4.144 28 O -0.376 6.376 29 H 0.068 0.932 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.092 0.908 35 H 0.409 0.591 36 H 0.101 0.899 37 H 0.122 0.878 38 H 0.289 0.711 39 H 0.099 0.901 40 H 0.103 0.897 41 H 0.075 0.925 42 H 0.096 0.904 43 H 0.061 0.939 44 H 0.076 0.924 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.186 11.691 -3.113 12.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C 0.033 3.967 3 H 0.120 0.880 4 C -0.192 4.192 5 C 0.047 3.953 6 N -0.875 5.875 7 S 2.789 3.211 8 O -0.977 6.977 9 O -0.975 6.975 10 C -0.883 4.883 11 C -0.036 4.036 12 C -0.202 4.202 13 C 0.137 3.863 14 C -0.462 4.462 15 H 0.105 0.895 16 C -0.149 4.149 17 N -0.386 5.386 18 Si 0.738 3.262 19 H -0.191 1.191 20 H -0.196 1.196 21 H -0.180 1.180 22 C -0.259 4.259 23 C -0.016 4.016 24 C -0.212 4.212 25 C 0.028 3.972 26 H 0.082 0.918 27 C -0.201 4.201 28 O -0.296 6.296 29 H 0.087 0.913 30 H 0.083 0.917 31 H 0.086 0.914 32 H 0.097 0.903 33 H 0.095 0.905 34 H 0.110 0.890 35 H 0.242 0.758 36 H 0.119 0.881 37 H 0.139 0.861 38 H 0.101 0.899 39 H 0.117 0.883 40 H 0.121 0.879 41 H 0.094 0.906 42 H 0.114 0.886 43 H 0.080 0.920 44 H 0.095 0.905 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.522 11.791 -2.392 12.536 hybrid contribution 0.093 -0.975 -0.862 1.305 sum 3.615 10.815 -3.254 11.859 Atomic orbital electron populations 1.22526 0.96313 1.03362 1.02795 1.22094 0.93583 0.96208 0.84793 0.87971 1.22501 1.02270 0.95404 0.99069 1.20743 0.98554 0.91059 0.84938 1.55835 1.32048 1.54540 1.45074 1.01287 0.72712 0.73199 0.73887 1.93491 1.70010 1.79606 1.54611 1.93485 1.39589 1.79210 1.85175 1.29096 1.09968 1.20762 1.28434 1.20215 0.93226 0.97256 0.92933 1.21320 1.02269 0.94850 1.01767 1.17835 0.89846 0.90467 0.88160 1.19936 0.93917 1.13454 1.18906 0.89478 1.26131 0.95323 0.95495 0.97998 1.69825 0.99825 1.34032 1.34956 0.86170 0.79478 0.79873 0.80690 1.19096 1.19565 1.17973 1.21017 1.02812 1.00982 1.01080 1.20137 0.94610 0.92150 0.94702 1.22876 1.02693 1.01713 0.93926 1.22092 0.98374 0.81489 0.95276 0.91840 1.21756 1.01845 1.00917 0.95559 1.87958 1.73797 1.24967 1.42855 0.91274 0.91727 0.91446 0.90255 0.90509 0.88982 0.75814 0.88118 0.86065 0.89931 0.88259 0.87908 0.90623 0.88585 0.92010 0.90470 0.92140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.96 8.65 37.16 0.32 -1.64 16 2 C 0.09 0.97 3.91 -26.69 -0.10 0.86 16 3 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 4 C -0.15 -1.67 5.18 -26.59 -0.14 -1.81 16 5 C 0.15 2.09 2.56 -67.74 -0.17 1.92 16 6 N -1.12 -16.21 5.48 -4.73 -0.03 -16.24 16 7 S 2.69 51.05 5.71 -107.50 -0.61 50.43 16 8 O -0.99 -20.84 17.26 -57.17 -0.99 -21.83 16 9 O -0.98 -20.87 16.60 -57.17 -0.95 -21.82 16 10 C -0.79 -16.65 5.17 -39.29 -0.20 -16.85 16 11 C -0.02 -0.35 8.54 -39.66 -0.34 -0.69 16 12 C -0.18 -4.33 8.70 -38.87 -0.34 -4.67 16 13 C 0.14 3.43 5.57 -106.82 -0.60 2.83 16 14 C -0.43 -10.34 9.05 -37.74 -0.34 -10.68 16 15 H 0.09 1.96 7.91 -52.49 -0.41 1.55 16 16 C 0.07 1.64 5.14 -17.34 -0.09 1.55 16 17 N -0.76 -17.90 10.97 55.55 0.61 -17.29 16 18 Si 0.91 16.59 29.59 -169.99 -5.03 11.56 16 19 H -0.27 -4.80 7.11 56.52 0.40 -4.40 16 20 H -0.27 -4.81 7.11 56.52 0.40 -4.41 16 21 H -0.26 -4.60 7.11 56.52 0.40 -4.20 16 22 C -0.24 -5.46 9.80 -38.87 -0.38 -5.84 16 23 C 0.00 0.09 9.49 -39.66 -0.38 -0.29 16 24 C -0.17 -2.39 5.03 -26.59 -0.13 -2.53 16 25 C 0.09 1.10 2.93 -26.68 -0.08 1.02 16 26 H 0.06 0.81 6.34 -51.93 -0.33 0.48 16 27 C -0.14 -1.72 9.57 37.16 0.36 -1.36 16 28 O -0.38 -4.74 10.24 -35.23 -0.36 -5.10 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.07 0.76 4.98 -51.92 -0.26 0.51 16 32 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.09 1.34 6.00 -51.93 -0.31 1.03 16 35 H 0.41 4.92 8.84 -34.47 -0.30 4.61 16 36 H 0.10 2.07 7.59 -52.49 -0.40 1.67 16 37 H 0.12 2.94 6.18 -52.48 -0.32 2.61 16 38 H 0.29 6.08 8.30 -40.82 -0.34 5.75 16 39 H 0.10 2.11 8.06 -52.49 -0.42 1.69 16 40 H 0.10 2.04 7.60 -52.49 -0.40 1.64 16 41 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.10 1.54 6.26 -51.93 -0.33 1.21 16 43 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 44 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 45 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 367.79 15.07 5.54 5.54 Total: -1.00 -29.09 367.79 -10.86 -39.94 By element: Atomic # 1 Polarization: 19.39 SS G_CDS: -6.43 Total: 12.96 kcal Atomic # 6 Polarization: -35.55 SS G_CDS: -2.61 Total: -38.16 kcal Atomic # 7 Polarization: -34.11 SS G_CDS: 0.58 Total: -33.53 kcal Atomic # 8 Polarization: -46.45 SS G_CDS: -2.30 Total: -48.75 kcal Atomic # 14 Polarization: 16.59 SS G_CDS: -5.03 Total: 11.56 kcal Atomic # 16 Polarization: 51.05 SS G_CDS: -0.61 Total: 50.43 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -29.09 -10.86 -39.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162944159.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.650 kcal (2) G-P(sol) polarization free energy of solvation -29.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds