Wall clock time and date at job start Tue Mar 31 2020 23:33:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.47881 * 2 1 4 4 C 1.53087 * 109.48400 * 120.02679 * 2 1 3 5 5 C 1.53185 * 109.16190 * 62.38521 * 4 2 1 6 6 N 1.46505 * 109.54146 * 176.84694 * 5 4 2 7 7 S 1.65598 * 119.99471 * 145.17753 * 6 5 4 8 8 O 1.42099 * 106.39903 * 178.26794 * 7 6 5 9 9 O 1.42100 * 106.40645 * 311.18231 * 7 6 5 10 10 C 1.76195 * 107.22046 * 64.72829 * 7 6 5 11 11 C 1.38635 * 119.74832 * 269.72892 * 10 7 6 12 12 C 1.37620 * 120.24761 * 179.72032 * 11 10 7 13 13 C 1.40713 * 119.74620 * 0.56617 * 12 11 10 14 14 C 1.41392 * 120.24737 * 179.67980 * 13 12 11 15 15 H 1.08000 * 119.99997 * 155.30901 * 14 13 12 16 16 C 1.39942 * 120.00034 * 335.31549 * 14 13 12 17 17 N 1.30825 * 120.00037 * 342.22847 * 16 14 13 18 18 Si 1.86800 * 120.00181 * 162.22697 * 16 14 13 19 19 H 1.48508 * 109.46973 * 94.66226 * 18 16 14 20 20 H 1.48500 * 109.47320 * 214.66129 * 18 16 14 21 21 H 1.48498 * 109.47019 * 334.66633 * 18 16 14 22 22 C 1.40721 * 119.50795 * 359.70886 * 13 12 11 23 23 C 1.37616 * 119.74586 * 359.97438 * 22 13 12 24 24 C 1.53176 * 109.10669 * 56.93746 * 5 4 2 25 25 C 1.53103 * 109.15827 * 303.15098 * 24 5 4 26 26 H 1.08993 * 109.40585 * 297.49453 * 25 24 5 27 27 C 1.53003 * 109.48916 * 177.50860 * 25 24 5 28 28 O 1.42900 * 109.48514 * 57.47678 * 25 24 5 29 29 H 1.08994 * 109.47398 * 299.96897 * 1 2 3 30 30 H 1.09001 * 109.47521 * 59.97917 * 1 2 3 31 31 H 1.09009 * 109.46786 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.52160 * 302.48616 * 4 2 1 33 33 H 1.08999 * 109.52377 * 182.29179 * 4 2 1 34 34 H 1.09000 * 109.54521 * 297.02681 * 5 4 2 35 35 H 0.96994 * 120.00110 * 324.90534 * 6 5 4 36 36 H 1.08002 * 119.87815 * 359.97153 * 11 10 7 37 37 H 1.08004 * 120.12655 * 180.27425 * 12 11 10 38 38 H 0.97006 * 120.00087 * 179.97438 * 17 16 14 39 39 H 1.08001 * 120.12547 * 179.97438 * 22 13 12 40 40 H 1.07998 * 119.87062 * 180.02562 * 23 22 13 41 41 H 1.09004 * 109.52206 * 62.97518 * 24 5 4 42 42 H 1.09002 * 109.51704 * 183.15652 * 24 5 4 43 43 H 1.08996 * 109.47335 * 299.96643 * 27 25 24 44 44 H 1.09006 * 109.47107 * 59.96189 * 27 25 24 45 45 H 1.08994 * 109.46843 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0406 -0.7222 1.2495 5 6 1.5760 -2.1814 1.2120 6 7 2.1229 -2.8996 2.3659 7 16 1.2346 -4.0910 3.0964 8 8 2.0452 -4.6130 4.1403 9 8 -0.0606 -3.5490 3.3154 10 6 1.0383 -5.3898 1.9221 11 6 -0.0553 -5.3874 1.0701 12 6 -0.2157 -6.3937 0.1451 13 6 0.7293 -7.4339 0.0741 14 6 0.5713 -8.4766 -0.8676 15 1 1.4328 -9.0318 -1.2082 16 6 -0.7013 -8.7893 -1.3585 17 7 -1.7674 -8.3820 -0.7189 18 14 -0.8780 -9.7881 -2.9272 19 1 -1.0380 -11.2241 -2.5842 20 1 -2.0712 -9.3226 -3.6787 21 1 0.3349 -9.6116 -3.7655 22 6 1.8324 -7.4290 0.9478 23 6 1.9760 -6.4091 1.8605 24 6 2.0752 -2.8334 -0.0810 25 6 1.5650 -2.0284 -1.2792 26 1 0.4755 -2.0551 -1.2960 27 6 2.1104 -2.6370 -2.5727 28 8 2.0067 -0.6741 -1.1664 29 1 -0.3634 0.5133 0.8902 30 1 -0.3634 0.5141 -0.8898 31 1 -0.3633 -1.0278 -0.0005 32 1 1.6419 -0.2358 2.1398 33 1 3.1298 -0.6871 1.2710 34 1 0.4870 -2.2183 1.2422 35 1 3.0068 -2.6800 2.6994 36 1 -0.7821 -4.5908 1.1298 37 1 -1.0661 -6.3875 -0.5207 38 1 -2.6496 -8.5984 -1.0594 39 1 2.5635 -8.2227 0.9023 40 1 2.8220 -6.4031 2.5317 41 1 3.1651 -2.8424 -0.0872 42 1 1.7013 -3.8556 -0.1414 43 1 3.1999 -2.6106 -2.5555 44 1 1.7733 -3.6701 -2.6585 45 1 1.7466 -2.0639 -3.4254 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000162944159.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:33:56 Heat of formation + Delta-G solvation = -143.125609 kcal Electronic energy + Delta-G solvation = -28714.904880 eV Core-core repulsion = 24822.248822 eV Total energy + Delta-G solvation = -3892.656058 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.95642 -39.38445 -38.17481 -36.82081 -36.65095 -35.79996 -34.26740 -32.32514 -32.05935 -31.28359 -29.52439 -27.72374 -27.49066 -23.95490 -23.34409 -23.08582 -22.91485 -20.74631 -20.13001 -19.41398 -18.68051 -18.26920 -17.59867 -17.22493 -17.11684 -16.47610 -15.95382 -15.76927 -15.72147 -15.22121 -15.02203 -14.99350 -14.81492 -14.12173 -13.98278 -13.82794 -13.56705 -13.51781 -13.17100 -13.10127 -13.04800 -13.04314 -12.97584 -12.87240 -12.79413 -12.62001 -12.52381 -12.37688 -12.09952 -12.01180 -11.91413 -11.53809 -11.36885 -11.18817 -10.97780 -10.48658 -10.32837 -9.75285 -9.53339 -8.86795 -6.63954 -0.32616 0.49290 1.07142 1.36078 1.41723 1.52698 2.11171 2.20924 2.52673 2.84828 2.91821 3.52812 3.55542 3.66737 3.77355 3.94463 4.00501 4.15989 4.21555 4.31201 4.35064 4.35288 4.44088 4.54275 4.63435 4.69932 4.82384 4.87864 4.92825 4.95257 5.04148 5.06487 5.10721 5.15256 5.21130 5.25041 5.28758 5.34799 5.42311 5.53164 5.60598 5.77531 5.94081 6.15923 6.19187 6.35707 6.50071 6.69632 6.81949 8.08235 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011342 B = 0.004373 C = 0.003523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2468.135381 B = 6401.576225 C = 7946.073454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.088 3.912 3 H 0.129 0.871 4 C -0.148 4.148 5 C 0.148 3.852 6 N -1.102 6.102 7 S 2.719 3.281 8 O -1.004 7.004 9 O -1.004 7.004 10 C -0.792 4.792 11 C -0.015 4.015 12 C -0.201 4.201 13 C 0.115 3.885 14 C -0.465 4.465 15 H 0.091 0.909 16 C 0.037 3.963 17 N -0.798 5.798 18 Si 0.988 3.012 19 H -0.261 1.261 20 H -0.263 1.263 21 H -0.253 1.253 22 C -0.255 4.255 23 C 0.000 4.000 24 C -0.170 4.170 25 C 0.088 3.912 26 H 0.060 0.940 27 C -0.142 4.142 28 O -0.383 6.383 29 H 0.081 0.919 30 H 0.070 0.930 31 H 0.049 0.951 32 H 0.094 0.906 33 H 0.089 0.911 34 H 0.081 0.919 35 H 0.425 0.575 36 H 0.110 0.890 37 H 0.110 0.890 38 H 0.298 0.702 39 H 0.109 0.891 40 H 0.122 0.878 41 H 0.080 0.920 42 H 0.069 0.931 43 H 0.065 0.935 44 H 0.066 0.934 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.966 13.156 -3.486 14.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C 0.030 3.970 3 H 0.147 0.853 4 C -0.187 4.187 5 C 0.041 3.959 6 N -0.862 5.862 7 S 2.815 3.185 8 O -0.995 6.995 9 O -0.994 6.994 10 C -0.885 4.885 11 C -0.035 4.035 12 C -0.222 4.222 13 C 0.112 3.888 14 C -0.492 4.492 15 H 0.109 0.891 16 C -0.183 4.183 17 N -0.421 5.421 18 Si 0.807 3.193 19 H -0.186 1.186 20 H -0.187 1.187 21 H -0.176 1.176 22 C -0.276 4.276 23 C -0.020 4.020 24 C -0.209 4.209 25 C 0.029 3.971 26 H 0.078 0.922 27 C -0.200 4.200 28 O -0.302 6.302 29 H 0.100 0.900 30 H 0.089 0.911 31 H 0.068 0.932 32 H 0.112 0.888 33 H 0.108 0.892 34 H 0.099 0.901 35 H 0.261 0.739 36 H 0.128 0.872 37 H 0.128 0.872 38 H 0.109 0.891 39 H 0.127 0.873 40 H 0.140 0.860 41 H 0.099 0.901 42 H 0.088 0.912 43 H 0.084 0.916 44 H 0.085 0.915 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 4.312 13.239 -2.761 14.194 hybrid contribution -0.120 -1.297 -0.655 1.458 sum 4.192 11.942 -3.416 13.109 Atomic orbital electron populations 1.22543 0.96257 1.02522 1.03793 1.22329 0.93743 0.97115 0.83817 0.85347 1.22512 1.03148 0.93045 0.99994 1.20921 0.98095 0.92836 0.84022 1.55374 1.32572 1.52957 1.45251 1.00400 0.72285 0.72829 0.72938 1.93461 1.70267 1.80335 1.55428 1.93461 1.41258 1.79332 1.85367 1.29518 1.09240 1.21857 1.27917 1.20340 0.93666 0.96906 0.92574 1.21302 1.02393 0.95746 1.02710 1.18157 0.90598 0.91087 0.88999 1.20212 0.94953 1.14085 1.19966 0.89099 1.26975 0.94403 0.96205 1.00683 1.69861 1.00583 1.35173 1.36524 0.85090 0.79599 0.78194 0.76392 1.18563 1.18728 1.17610 1.21226 1.02973 1.01886 1.01479 1.20394 0.95226 0.91792 0.94552 1.22810 1.02865 1.00492 0.94768 1.22017 0.98171 0.81846 0.95019 0.92225 1.21737 1.02057 1.00448 0.95718 1.87952 1.73958 1.24445 1.43878 0.89966 0.91122 0.93186 0.88771 0.89213 0.90050 0.73911 0.87180 0.87229 0.89090 0.87321 0.86011 0.90107 0.91218 0.91632 0.91507 0.91090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.56 8.65 71.98 0.62 -2.94 16 2 C 0.09 1.61 3.91 30.62 0.12 1.73 16 3 H 0.13 1.74 8.14 -2.39 -0.02 1.72 16 4 C -0.15 -2.79 5.18 30.69 0.16 -2.63 16 5 C 0.15 3.80 2.56 45.11 0.12 3.91 16 6 N -1.10 -29.96 5.48 -168.87 -0.93 -30.88 16 7 S 2.72 100.58 5.71 -56.49 -0.32 100.26 16 8 O -1.00 -41.06 17.26 -128.00 -2.21 -43.27 16 9 O -1.00 -41.75 16.60 -128.00 -2.13 -43.87 16 10 C -0.79 -33.64 5.17 22.46 0.12 -33.52 16 11 C -0.01 -0.67 8.54 22.22 0.19 -0.48 16 12 C -0.20 -9.97 8.70 22.73 0.20 -9.77 16 13 C 0.12 5.80 5.57 -21.29 -0.12 5.69 16 14 C -0.47 -22.76 9.05 23.46 0.21 -22.55 16 15 H 0.09 4.20 7.91 -2.91 -0.02 4.18 16 16 C 0.04 1.67 5.14 85.26 0.44 2.11 16 17 N -0.80 -38.35 10.97 21.83 0.24 -38.11 16 18 Si 0.99 33.99 29.59 68.60 2.03 36.02 16 19 H -0.26 -8.73 7.11 99.48 0.71 -8.02 16 20 H -0.26 -8.63 7.11 99.48 0.71 -7.93 16 21 H -0.25 -8.47 7.11 99.48 0.71 -7.76 16 22 C -0.26 -11.95 9.80 22.73 0.22 -11.73 16 23 C 0.00 0.01 9.49 22.22 0.21 0.22 16 24 C -0.17 -4.60 5.03 30.69 0.15 -4.44 16 25 C 0.09 2.18 2.93 30.63 0.09 2.27 16 26 H 0.06 1.52 6.34 -2.39 -0.02 1.51 16 27 C -0.14 -3.35 9.57 71.98 0.69 -2.66 16 28 O -0.38 -8.85 10.24 -148.98 -1.53 -10.37 16 29 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.05 1.09 4.98 -2.38 -0.01 1.08 16 32 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.08 2.30 6.00 -2.39 -0.01 2.29 16 35 H 0.42 9.13 8.84 -96.75 -0.86 8.27 16 36 H 0.11 4.64 7.59 -2.91 -0.02 4.62 16 37 H 0.11 5.58 6.18 -2.91 -0.02 5.57 16 38 H 0.30 12.75 8.30 -92.70 -0.77 11.98 16 39 H 0.11 4.72 8.06 -2.91 -0.02 4.69 16 40 H 0.12 4.74 7.60 -2.91 -0.02 4.71 16 41 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 42 H 0.07 2.27 6.26 -2.39 -0.01 2.25 16 43 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 44 H 0.07 1.69 8.14 -2.38 -0.02 1.67 16 45 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 Total: -1.00 -62.51 367.79 -1.26 -63.77 By element: Atomic # 1 Polarization: 41.08 SS G_CDS: 0.16 Total: 41.24 kcal Atomic # 6 Polarization: -78.20 SS G_CDS: 3.42 Total: -74.78 kcal Atomic # 7 Polarization: -68.31 SS G_CDS: -0.69 Total: -68.99 kcal Atomic # 8 Polarization: -91.66 SS G_CDS: -5.86 Total: -97.52 kcal Atomic # 14 Polarization: 33.99 SS G_CDS: 2.03 Total: 36.02 kcal Atomic # 16 Polarization: 100.58 SS G_CDS: -0.32 Total: 100.26 kcal Total: -62.51 -1.26 -63.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162944159.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.351 kcal (2) G-P(sol) polarization free energy of solvation -62.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds