Wall clock time and date at job start Tue Mar 31 2020 23:34:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09006 * 109.48319 * 2 1 4 4 C 1.53088 * 109.48441 * 239.97818 * 2 1 3 5 5 C 1.53172 * 109.16680 * 182.41858 * 4 2 1 6 6 N 1.46510 * 109.61878 * 176.87831 * 5 4 2 7 7 S 1.65589 * 119.99894 * 95.38803 * 6 5 4 8 8 O 1.42098 * 106.40490 * 178.54166 * 7 6 5 9 9 O 1.42100 * 106.40469 * 311.45959 * 7 6 5 10 10 C 1.76199 * 107.22004 * 65.00042 * 7 6 5 11 11 C 1.38634 * 119.74965 * 269.72446 * 10 7 6 12 12 C 1.37618 * 120.24566 * 179.76180 * 11 10 7 13 13 C 1.40717 * 119.74824 * 0.48792 * 12 11 10 14 14 C 1.41394 * 120.24511 * 179.78741 * 13 12 11 15 15 H 1.07997 * 120.00338 * 24.37075 * 14 13 12 16 16 C 1.39946 * 119.99682 * 204.36511 * 14 13 12 17 17 N 1.30826 * 120.00353 * 17.85873 * 16 14 13 18 18 Si 1.86806 * 119.99814 * 197.85627 * 16 14 13 19 19 H 1.48500 * 109.46785 * 60.00449 * 18 16 14 20 20 H 1.48503 * 109.46917 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.47035 * 300.00357 * 18 16 14 22 22 C 1.40718 * 119.50785 * 359.76717 * 13 12 11 23 23 C 1.37615 * 119.74728 * 0.02562 * 22 13 12 24 24 C 1.53177 * 109.04505 * 56.96341 * 5 4 2 25 25 C 1.53086 * 109.16344 * 303.02490 * 24 5 4 26 26 H 1.08997 * 109.48536 * 177.59042 * 25 24 5 27 27 C 1.53003 * 109.49134 * 297.62020 * 25 24 5 28 28 O 1.42900 * 109.41404 * 57.60931 * 25 24 5 29 29 H 1.08998 * 109.47281 * 299.99986 * 1 2 3 30 30 H 1.09002 * 109.47049 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47552 * 60.00161 * 1 2 3 32 32 H 1.09009 * 109.52188 * 302.31493 * 4 2 1 33 33 H 1.09000 * 109.52339 * 62.49640 * 4 2 1 34 34 H 1.08993 * 109.53410 * 297.09454 * 5 4 2 35 35 H 0.96995 * 119.99591 * 275.39295 * 6 5 4 36 36 H 1.07996 * 119.87705 * 359.97438 * 11 10 7 37 37 H 1.08002 * 120.12986 * 180.28284 * 12 11 10 38 38 H 0.96998 * 120.00149 * 179.97438 * 17 16 14 39 39 H 1.08001 * 120.12802 * 180.02562 * 22 13 12 40 40 H 1.07994 * 119.87748 * 180.02562 * 23 22 13 41 41 H 1.08997 * 109.52278 * 183.11814 * 24 5 4 42 42 H 1.09006 * 109.52575 * 62.93175 * 24 5 4 43 43 H 1.08996 * 109.47478 * 179.97438 * 27 25 24 44 44 H 1.08999 * 109.47286 * 299.95270 * 27 25 24 45 45 H 1.09005 * 109.46568 * 59.94709 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0405 -0.7221 -1.2496 5 6 3.5710 -0.7709 -1.2121 6 7 4.0676 -1.5250 -2.3659 7 16 4.5319 -0.7256 -3.7397 8 8 4.9895 -1.7191 -4.6468 9 8 3.4852 0.1848 -4.0475 10 6 5.9367 0.2534 -3.3240 11 6 5.7610 1.5544 -2.8786 12 6 6.8507 2.3265 -2.5464 13 6 8.1474 1.7941 -2.6702 14 6 9.2746 2.5796 -2.3362 15 1 9.1744 3.4001 -1.6411 16 6 10.5203 2.2938 -2.9063 17 7 10.5927 1.5560 -3.9842 18 14 12.0799 2.9659 -2.1281 19 1 12.1971 2.4590 -0.7372 20 1 13.2574 2.5235 -2.9175 21 1 12.0250 4.4498 -2.1113 22 6 8.3139 0.4741 -3.1285 23 6 7.2096 -0.2811 -3.4508 24 6 4.0176 -1.4600 0.0810 25 6 3.4307 -0.7092 1.2791 26 1 3.7099 -1.2200 2.2006 27 6 3.9761 0.7202 1.3028 28 8 2.0066 -0.6741 1.1665 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 -0.8900 32 1 1.6443 -1.7374 -1.2711 33 1 1.7148 -0.1841 -2.1398 34 1 3.9688 0.2434 -1.2408 35 1 4.1242 -2.4924 -2.3250 36 1 4.7651 1.9624 -2.7886 37 1 6.7114 3.3383 -2.1952 38 1 11.4561 1.3582 -4.3795 39 1 9.3045 0.0553 -3.2269 40 1 7.3349 -1.2946 -3.8024 41 1 5.1058 -1.4497 0.1422 42 1 3.6613 -2.4902 0.0867 43 1 3.5577 1.2546 2.1556 44 1 5.0623 0.6933 1.3886 45 1 3.6970 1.2308 0.3810 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000162944293.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:34:01 Heat of formation + Delta-G solvation = -125.211276 kcal Electronic energy + Delta-G solvation = -28334.748023 eV Core-core repulsion = 24442.868789 eV Total energy + Delta-G solvation = -3891.879234 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -40.02626 -37.61780 -36.53411 -35.53473 -35.13808 -34.07761 -33.41567 -31.29213 -30.29739 -29.51865 -28.57652 -26.72739 -25.85985 -22.99207 -22.18701 -21.53574 -21.20121 -19.61343 -18.80666 -17.66570 -17.18142 -16.83163 -16.42195 -16.19514 -15.53135 -15.20723 -14.83956 -14.52464 -14.22621 -14.06944 -13.84791 -13.41932 -13.23713 -12.93450 -12.68133 -12.47551 -12.25658 -12.22714 -11.99311 -11.81226 -11.75573 -11.62015 -11.47512 -11.44314 -11.37774 -11.29405 -11.25795 -11.16429 -11.03546 -10.90918 -10.47737 -10.05814 -9.80970 -9.68532 -9.54387 -9.50770 -9.08873 -8.00235 -7.75006 -7.17380 -4.84075 1.22433 2.22130 2.85069 2.86105 2.88199 2.91532 3.61352 3.64043 3.72995 4.20307 4.45164 4.62632 4.71937 4.82911 4.93445 5.03029 5.12471 5.25823 5.26580 5.30063 5.34733 5.42369 5.49913 5.64445 5.67016 5.82355 5.89466 5.94631 5.99795 6.01153 6.08105 6.09721 6.15103 6.26421 6.37191 6.64108 6.67108 6.87799 7.00251 7.22448 7.26024 7.30291 7.38570 7.59711 7.72648 7.92717 8.27995 8.47221 8.60969 9.74008 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.014526 B = 0.003554 C = 0.003100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1927.090993 B = 7875.539945 C = 9029.829085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.084 3.916 3 H 0.065 0.935 4 C -0.169 4.169 5 C 0.158 3.842 6 N -1.120 6.120 7 S 2.690 3.310 8 O -0.985 6.985 9 O -0.984 6.984 10 C -0.788 4.788 11 C -0.001 4.001 12 C -0.238 4.238 13 C 0.140 3.860 14 C -0.436 4.436 15 H 0.087 0.913 16 C 0.072 3.928 17 N -0.764 5.764 18 Si 0.918 3.082 19 H -0.259 1.259 20 H -0.274 1.274 21 H -0.261 1.261 22 C -0.184 4.184 23 C -0.014 4.014 24 C -0.155 4.155 25 C 0.092 3.908 26 H 0.104 0.896 27 C -0.192 4.192 28 O -0.377 6.377 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.410 0.590 36 H 0.102 0.898 37 H 0.100 0.900 38 H 0.290 0.710 39 H 0.122 0.878 40 H 0.103 0.897 41 H 0.084 0.916 42 H 0.075 0.925 43 H 0.063 0.937 44 H 0.073 0.927 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.587 -3.651 9.198 13.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.025 3.975 3 H 0.083 0.917 4 C -0.208 4.208 5 C 0.050 3.950 6 N -0.875 5.875 7 S 2.789 3.211 8 O -0.976 6.976 9 O -0.974 6.974 10 C -0.884 4.884 11 C -0.021 4.021 12 C -0.258 4.258 13 C 0.136 3.864 14 C -0.463 4.463 15 H 0.105 0.895 16 C -0.151 4.151 17 N -0.386 5.386 18 Si 0.741 3.259 19 H -0.183 1.183 20 H -0.199 1.199 21 H -0.185 1.185 22 C -0.204 4.204 23 C -0.034 4.034 24 C -0.195 4.195 25 C 0.033 3.967 26 H 0.122 0.878 27 C -0.249 4.249 28 O -0.296 6.296 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.090 0.910 32 H 0.093 0.907 33 H 0.107 0.893 34 H 0.108 0.892 35 H 0.242 0.758 36 H 0.120 0.880 37 H 0.118 0.882 38 H 0.102 0.898 39 H 0.140 0.860 40 H 0.121 0.879 41 H 0.103 0.897 42 H 0.094 0.906 43 H 0.082 0.918 44 H 0.092 0.908 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -10.008 -3.731 8.277 13.513 hybrid contribution 1.650 0.252 0.389 1.714 sum -8.358 -3.479 8.666 12.532 Atomic orbital electron populations 1.21751 0.93103 1.02785 1.02399 1.22091 0.94971 0.95718 0.84683 0.91730 1.22825 0.96035 1.02569 0.99386 1.20682 0.93201 0.95803 0.85306 1.55859 1.81661 1.18033 1.31916 1.01313 0.74269 0.73202 0.72281 1.93497 1.82798 1.60368 1.60889 1.93478 1.56268 1.65022 1.82647 1.29125 1.13746 1.09926 1.35633 1.20151 0.97480 0.91717 0.92797 1.21011 0.92865 0.99135 1.12802 1.17837 0.91920 0.91255 0.85348 1.19916 0.92192 1.12620 1.21536 0.89460 1.26149 1.01740 0.93685 0.93478 1.69815 1.28617 1.26501 1.13652 0.86192 0.79012 0.80361 0.80371 1.18347 1.19873 1.18530 1.21340 0.97591 0.94445 1.07012 1.20245 0.91480 0.97643 0.94038 1.22526 1.02345 1.00378 0.94204 1.22128 0.80694 0.95736 0.98094 0.87827 1.22517 1.02496 0.97049 1.02869 1.87949 1.20733 1.77775 1.43170 0.91957 0.91959 0.90957 0.90709 0.89342 0.89187 0.75778 0.87969 0.88220 0.89830 0.86012 0.87926 0.89691 0.90605 0.91802 0.90833 0.91608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 9.56 37.15 0.36 -1.00 16 2 C 0.08 0.95 2.94 -26.69 -0.08 0.87 16 3 H 0.06 0.73 6.34 -51.93 -0.33 0.40 16 4 C -0.17 -2.09 5.03 -26.60 -0.13 -2.23 16 5 C 0.16 2.10 2.43 -67.74 -0.16 1.94 16 6 N -1.12 -16.22 5.48 -4.73 -0.03 -16.25 16 7 S 2.69 51.10 5.65 -107.50 -0.61 50.49 16 8 O -0.98 -21.18 17.26 -57.17 -0.99 -22.16 16 9 O -0.98 -20.28 16.63 -57.17 -0.95 -21.24 16 10 C -0.79 -16.96 5.84 -39.29 -0.23 -17.19 16 11 C 0.00 -0.03 8.88 -39.66 -0.35 -0.38 16 12 C -0.24 -5.44 9.80 -38.87 -0.38 -5.82 16 13 C 0.14 3.47 5.58 -106.82 -0.60 2.87 16 14 C -0.44 -10.46 9.05 -37.74 -0.34 -10.80 16 15 H 0.09 1.97 7.91 -52.49 -0.41 1.55 16 16 C 0.07 1.64 5.14 -17.34 -0.09 1.55 16 17 N -0.76 -18.12 10.95 55.55 0.61 -17.51 16 18 Si 0.92 16.72 29.60 -169.99 -5.03 11.69 16 19 H -0.26 -4.67 7.11 56.52 0.40 -4.27 16 20 H -0.27 -4.88 7.11 56.52 0.40 -4.48 16 21 H -0.26 -4.70 7.11 56.52 0.40 -4.30 16 22 C -0.18 -4.51 8.70 -38.87 -0.34 -4.85 16 23 C -0.01 -0.31 9.49 -39.66 -0.38 -0.69 16 24 C -0.16 -1.76 5.17 -26.60 -0.14 -1.90 16 25 C 0.09 0.99 3.91 -26.69 -0.10 0.89 16 26 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 27 C -0.19 -2.08 8.65 37.16 0.32 -1.76 16 28 O -0.38 -4.51 10.24 -35.23 -0.36 -4.87 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.87 8.14 -51.92 -0.42 0.45 16 33 H 0.09 1.19 7.76 -51.93 -0.40 0.79 16 34 H 0.09 1.30 5.72 -51.93 -0.30 1.00 16 35 H 0.41 4.98 8.84 -34.46 -0.30 4.67 16 36 H 0.10 1.98 7.59 -52.49 -0.40 1.58 16 37 H 0.10 2.10 8.06 -52.49 -0.42 1.67 16 38 H 0.29 6.20 8.30 -40.82 -0.34 5.86 16 39 H 0.12 3.04 6.16 -52.49 -0.32 2.71 16 40 H 0.10 2.20 7.60 -52.49 -0.40 1.80 16 41 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.07 0.76 4.98 -51.93 -0.26 0.50 16 LS Contribution 369.82 15.07 5.57 5.57 Total: -1.00 -29.45 369.82 -10.92 -40.37 By element: Atomic # 1 Polarization: 18.92 SS G_CDS: -6.49 Total: 12.43 kcal Atomic # 6 Polarization: -35.86 SS G_CDS: -2.65 Total: -38.51 kcal Atomic # 7 Polarization: -34.35 SS G_CDS: 0.58 Total: -33.77 kcal Atomic # 8 Polarization: -45.97 SS G_CDS: -2.30 Total: -48.27 kcal Atomic # 14 Polarization: 16.72 SS G_CDS: -5.03 Total: 11.69 kcal Atomic # 16 Polarization: 51.10 SS G_CDS: -0.61 Total: 50.49 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -29.45 -10.92 -40.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162944293.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.843 kcal (2) G-P(sol) polarization free energy of solvation -29.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds