Wall clock time and date at job start Tue Mar 31 2020 23:34:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09006 * 109.48319 * 2 1 4 4 C 1.53088 * 109.48441 * 239.97818 * 2 1 3 5 5 C 1.53172 * 109.16680 * 182.41858 * 4 2 1 6 6 N 1.46510 * 109.61878 * 176.87831 * 5 4 2 7 7 S 1.65589 * 119.99894 * 95.38803 * 6 5 4 8 8 O 1.42098 * 106.40490 * 178.54166 * 7 6 5 9 9 O 1.42100 * 106.40469 * 311.45959 * 7 6 5 10 10 C 1.76199 * 107.22004 * 65.00042 * 7 6 5 11 11 C 1.38634 * 119.74965 * 269.72446 * 10 7 6 12 12 C 1.37618 * 120.24566 * 179.76180 * 11 10 7 13 13 C 1.40717 * 119.74824 * 0.48792 * 12 11 10 14 14 C 1.41394 * 120.24511 * 179.78741 * 13 12 11 15 15 H 1.07997 * 120.00338 * 24.37075 * 14 13 12 16 16 C 1.39946 * 119.99682 * 204.36511 * 14 13 12 17 17 N 1.30826 * 120.00353 * 17.85873 * 16 14 13 18 18 Si 1.86806 * 119.99814 * 197.85627 * 16 14 13 19 19 H 1.48500 * 109.46785 * 60.00449 * 18 16 14 20 20 H 1.48503 * 109.46917 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.47035 * 300.00357 * 18 16 14 22 22 C 1.40718 * 119.50785 * 359.76717 * 13 12 11 23 23 C 1.37615 * 119.74728 * 0.02562 * 22 13 12 24 24 C 1.53177 * 109.04505 * 56.96341 * 5 4 2 25 25 C 1.53086 * 109.16344 * 303.02490 * 24 5 4 26 26 H 1.08997 * 109.48536 * 177.59042 * 25 24 5 27 27 C 1.53003 * 109.49134 * 297.62020 * 25 24 5 28 28 O 1.42900 * 109.41404 * 57.60931 * 25 24 5 29 29 H 1.08998 * 109.47281 * 299.99986 * 1 2 3 30 30 H 1.09002 * 109.47049 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47552 * 60.00161 * 1 2 3 32 32 H 1.09009 * 109.52188 * 302.31493 * 4 2 1 33 33 H 1.09000 * 109.52339 * 62.49640 * 4 2 1 34 34 H 1.08993 * 109.53410 * 297.09454 * 5 4 2 35 35 H 0.96995 * 119.99591 * 275.39295 * 6 5 4 36 36 H 1.07996 * 119.87705 * 359.97438 * 11 10 7 37 37 H 1.08002 * 120.12986 * 180.28284 * 12 11 10 38 38 H 0.96998 * 120.00149 * 179.97438 * 17 16 14 39 39 H 1.08001 * 120.12802 * 180.02562 * 22 13 12 40 40 H 1.07994 * 119.87748 * 180.02562 * 23 22 13 41 41 H 1.08997 * 109.52278 * 183.11814 * 24 5 4 42 42 H 1.09006 * 109.52575 * 62.93175 * 24 5 4 43 43 H 1.08996 * 109.47478 * 179.97438 * 27 25 24 44 44 H 1.08999 * 109.47286 * 299.95270 * 27 25 24 45 45 H 1.09005 * 109.46568 * 59.94709 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0405 -0.7221 -1.2496 5 6 3.5710 -0.7709 -1.2121 6 7 4.0676 -1.5250 -2.3659 7 16 4.5319 -0.7256 -3.7397 8 8 4.9895 -1.7191 -4.6468 9 8 3.4852 0.1848 -4.0475 10 6 5.9367 0.2534 -3.3240 11 6 5.7610 1.5544 -2.8786 12 6 6.8507 2.3265 -2.5464 13 6 8.1474 1.7941 -2.6702 14 6 9.2746 2.5796 -2.3362 15 1 9.1744 3.4001 -1.6411 16 6 10.5203 2.2938 -2.9063 17 7 10.5927 1.5560 -3.9842 18 14 12.0799 2.9659 -2.1281 19 1 12.1971 2.4590 -0.7372 20 1 13.2574 2.5235 -2.9175 21 1 12.0250 4.4498 -2.1113 22 6 8.3139 0.4741 -3.1285 23 6 7.2096 -0.2811 -3.4508 24 6 4.0176 -1.4600 0.0810 25 6 3.4307 -0.7092 1.2791 26 1 3.7099 -1.2200 2.2006 27 6 3.9761 0.7202 1.3028 28 8 2.0066 -0.6741 1.1665 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 -0.8900 32 1 1.6443 -1.7374 -1.2711 33 1 1.7148 -0.1841 -2.1398 34 1 3.9688 0.2434 -1.2408 35 1 4.1242 -2.4924 -2.3250 36 1 4.7651 1.9624 -2.7886 37 1 6.7114 3.3383 -2.1952 38 1 11.4561 1.3582 -4.3795 39 1 9.3045 0.0553 -3.2269 40 1 7.3349 -1.2946 -3.8024 41 1 5.1058 -1.4497 0.1422 42 1 3.6613 -2.4902 0.0867 43 1 3.5577 1.2546 2.1556 44 1 5.0623 0.6933 1.3886 45 1 3.6970 1.2308 0.3810 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000162944293.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:34:00 Heat of formation + Delta-G solvation = -143.980588 kcal Electronic energy + Delta-G solvation = -28335.561921 eV Core-core repulsion = 24442.868789 eV Total energy + Delta-G solvation = -3892.693133 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.95549 -39.39397 -38.16313 -36.80973 -36.63864 -35.81505 -34.26596 -32.32247 -32.07959 -31.31208 -29.52263 -27.63925 -27.59329 -23.97628 -23.31963 -23.12781 -22.93119 -20.72603 -20.13651 -19.43316 -18.67077 -18.23133 -17.71298 -17.19027 -17.08072 -16.50366 -15.93192 -15.82510 -15.68960 -15.22919 -15.10037 -14.92637 -14.83345 -14.13168 -13.99107 -13.82360 -13.56325 -13.49658 -13.15882 -13.10584 -13.04640 -13.01997 -12.96086 -12.89251 -12.78197 -12.60466 -12.56456 -12.39464 -12.12697 -12.01642 -11.91635 -11.55382 -11.35376 -11.19836 -10.98861 -10.48130 -10.33885 -9.79875 -9.56293 -8.88077 -6.66014 -0.32673 0.47527 1.04478 1.35444 1.43880 1.50011 2.10328 2.20999 2.51994 2.84975 2.91117 3.50387 3.56548 3.64482 3.80279 3.93940 3.99732 4.15398 4.19976 4.29051 4.32229 4.36440 4.43187 4.55701 4.63753 4.69721 4.84457 4.86429 4.91654 4.93563 5.04193 5.07418 5.09324 5.16923 5.19330 5.22727 5.29021 5.35290 5.41104 5.51221 5.58317 5.75497 5.91953 6.14298 6.16549 6.35449 6.48186 6.67325 6.80143 8.06776 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.014526 B = 0.003554 C = 0.003100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1927.090993 B = 7875.539945 C = 9029.829085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.081 3.919 3 H 0.063 0.937 4 C -0.166 4.166 5 C 0.149 3.851 6 N -1.104 6.104 7 S 2.721 3.279 8 O -1.008 7.008 9 O -0.997 6.997 10 C -0.796 4.796 11 C -0.001 4.001 12 C -0.253 4.253 13 C 0.113 3.887 14 C -0.465 4.465 15 H 0.094 0.906 16 C 0.034 3.966 17 N -0.799 5.799 18 Si 0.992 3.008 19 H -0.255 1.255 20 H -0.266 1.266 21 H -0.255 1.255 22 C -0.207 4.207 23 C -0.020 4.020 24 C -0.151 4.151 25 C 0.092 3.908 26 H 0.124 0.876 27 C -0.192 4.192 28 O -0.383 6.383 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.423 0.577 36 H 0.124 0.876 37 H 0.112 0.888 38 H 0.298 0.702 39 H 0.110 0.890 40 H 0.112 0.888 41 H 0.083 0.917 42 H 0.089 0.911 43 H 0.072 0.928 44 H 0.070 0.930 45 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.252 -3.878 10.579 15.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.023 3.977 3 H 0.081 0.919 4 C -0.206 4.206 5 C 0.042 3.958 6 N -0.863 5.863 7 S 2.816 3.184 8 O -0.999 6.999 9 O -0.987 6.987 10 C -0.890 4.890 11 C -0.021 4.021 12 C -0.273 4.273 13 C 0.110 3.890 14 C -0.492 4.492 15 H 0.112 0.888 16 C -0.185 4.185 17 N -0.422 5.422 18 Si 0.811 3.189 19 H -0.179 1.179 20 H -0.191 1.191 21 H -0.179 1.179 22 C -0.227 4.227 23 C -0.040 4.040 24 C -0.191 4.191 25 C 0.034 3.966 26 H 0.141 0.859 27 C -0.250 4.250 28 O -0.302 6.302 29 H 0.088 0.912 30 H 0.084 0.916 31 H 0.098 0.902 32 H 0.102 0.898 33 H 0.095 0.905 34 H 0.097 0.903 35 H 0.260 0.740 36 H 0.142 0.858 37 H 0.130 0.870 38 H 0.110 0.890 39 H 0.128 0.872 40 H 0.130 0.870 41 H 0.101 0.899 42 H 0.108 0.892 43 H 0.091 0.909 44 H 0.089 0.911 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -10.663 -3.952 9.655 14.917 hybrid contribution 1.721 0.265 -0.045 1.742 sum -8.941 -3.686 9.609 13.634 Atomic orbital electron populations 1.21762 0.91667 1.03254 1.03174 1.22164 0.96142 0.95388 0.84004 0.91916 1.22800 0.95060 1.03161 0.99557 1.20901 0.94033 0.95365 0.85511 1.55414 1.80934 1.18726 1.31213 1.00417 0.73104 0.72412 0.72420 1.93462 1.83107 1.60771 1.62551 1.93460 1.56084 1.65835 1.83317 1.29582 1.14462 1.10622 1.34289 1.20415 0.98152 0.91649 0.91877 1.21236 0.92741 0.99991 1.13352 1.18176 0.93119 0.91648 0.86071 1.20229 0.93147 1.13376 1.22449 0.88797 1.27044 1.04572 0.93548 0.93384 1.69860 1.29900 1.27565 1.14836 0.85089 0.74713 0.79751 0.79352 1.17877 1.19064 1.17873 1.21351 0.97604 0.95035 1.08739 1.20428 0.91810 0.98046 0.93755 1.22521 1.02307 1.01024 0.93217 1.22235 0.80233 0.95634 0.98544 0.85887 1.22518 1.02384 0.97339 1.02720 1.87952 1.21220 1.77803 1.43256 0.91243 0.91638 0.90183 0.89760 0.90488 0.90343 0.74043 0.85829 0.86990 0.89047 0.87241 0.86987 0.89880 0.89193 0.90904 0.91104 0.92669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.38 9.56 71.98 0.69 -1.69 16 2 C 0.08 1.69 2.94 30.62 0.09 1.78 16 3 H 0.06 1.33 6.34 -2.38 -0.02 1.31 16 4 C -0.17 -3.83 5.03 30.68 0.15 -3.68 16 5 C 0.15 3.75 2.43 45.11 0.11 3.86 16 6 N -1.10 -30.29 5.48 -168.89 -0.93 -31.21 16 7 S 2.72 100.93 5.65 -56.49 -0.32 100.61 16 8 O -1.01 -42.58 17.26 -128.00 -2.21 -44.79 16 9 O -1.00 -40.00 16.63 -128.00 -2.13 -42.13 16 10 C -0.80 -34.22 5.84 22.46 0.13 -34.09 16 11 C 0.00 -0.05 8.88 22.22 0.20 0.15 16 12 C -0.25 -11.73 9.80 22.73 0.22 -11.51 16 13 C 0.11 5.76 5.58 -21.29 -0.12 5.64 16 14 C -0.47 -22.80 9.05 23.46 0.21 -22.58 16 15 H 0.09 4.29 7.91 -2.91 -0.02 4.27 16 16 C 0.03 1.56 5.14 85.26 0.44 1.99 16 17 N -0.80 -38.74 10.95 21.83 0.24 -38.50 16 18 Si 0.99 33.99 29.60 68.60 2.03 36.02 16 19 H -0.25 -8.48 7.11 99.48 0.71 -7.77 16 20 H -0.27 -8.70 7.11 99.48 0.71 -8.00 16 21 H -0.25 -8.42 7.11 99.48 0.71 -7.71 16 22 C -0.21 -10.51 8.70 22.73 0.20 -10.31 16 23 C -0.02 -0.95 9.49 22.22 0.21 -0.74 16 24 C -0.15 -3.13 5.17 30.68 0.16 -2.98 16 25 C 0.09 1.78 3.91 30.62 0.12 1.90 16 26 H 0.12 1.94 8.14 -2.39 -0.02 1.92 16 27 C -0.19 -3.91 8.65 71.98 0.62 -3.29 16 28 O -0.38 -8.28 10.24 -148.98 -1.52 -9.80 16 29 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.08 1.77 8.14 -2.38 -0.02 1.75 16 33 H 0.08 1.96 7.76 -2.39 -0.02 1.94 16 34 H 0.08 2.18 5.72 -2.39 -0.01 2.17 16 35 H 0.42 9.45 8.84 -96.75 -0.86 8.59 16 36 H 0.12 4.68 7.59 -2.91 -0.02 4.66 16 37 H 0.11 4.75 8.06 -2.91 -0.02 4.73 16 38 H 0.30 12.93 8.30 -92.71 -0.77 12.16 16 39 H 0.11 5.71 6.16 -2.91 -0.02 5.69 16 40 H 0.11 4.87 7.60 -2.91 -0.02 4.84 16 41 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 42 H 0.09 1.62 8.14 -2.38 -0.02 1.60 16 43 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 44 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 45 H 0.05 1.23 4.98 -2.38 -0.01 1.22 16 Total: -1.00 -62.95 369.82 -1.25 -64.20 By element: Atomic # 1 Polarization: 41.00 SS G_CDS: 0.15 Total: 41.16 kcal Atomic # 6 Polarization: -78.98 SS G_CDS: 3.44 Total: -75.55 kcal Atomic # 7 Polarization: -69.03 SS G_CDS: -0.69 Total: -69.71 kcal Atomic # 8 Polarization: -90.86 SS G_CDS: -5.86 Total: -96.72 kcal Atomic # 14 Polarization: 33.99 SS G_CDS: 2.03 Total: 36.02 kcal Atomic # 16 Polarization: 100.93 SS G_CDS: -0.32 Total: 100.61 kcal Total: -62.95 -1.25 -64.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162944293.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.779 kcal (2) G-P(sol) polarization free energy of solvation -62.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds