Wall clock time and date at job start Tue Mar 31 2020 23:29:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53009 * 109.46990 * 2 1 4 4 S 1.81397 * 109.47235 * 179.97438 * 3 2 1 5 5 O 1.42105 * 110.54275 * 68.37271 * 4 3 2 6 6 O 1.42101 * 110.54298 * 291.62373 * 4 3 2 7 7 C 1.76193 * 104.44909 * 179.97438 * 4 3 2 8 8 C 1.37984 * 120.07458 * 115.00357 * 7 4 3 9 9 C 1.38335 * 120.14206 * 180.02562 * 8 7 4 10 10 C 1.38376 * 120.29907 * 359.97438 * 9 8 7 11 11 C 1.37933 * 120.14233 * 0.02562 * 10 9 8 12 12 C 1.39557 * 120.07567 * 294.72689 * 7 4 3 13 13 C 1.47850 * 120.14291 * 359.97438 * 12 7 4 14 14 O 1.21548 * 119.99627 * 0.02562 * 13 12 7 15 15 N 1.34777 * 119.99970 * 180.02562 * 13 12 7 16 16 C 1.46502 * 119.99804 * 180.02562 * 15 13 12 17 17 C 1.53000 * 109.47009 * 179.97438 * 16 15 13 18 18 C 1.52992 * 109.47099 * 179.97438 * 17 16 15 19 19 C 1.50701 * 109.47120 * 179.97438 * 18 17 16 20 20 H 1.07995 * 120.00111 * 0.02562 * 19 18 17 21 21 C 1.37883 * 119.99762 * 180.02562 * 19 18 17 22 22 N 1.31513 * 120.00246 * 0.02562 * 21 19 18 23 23 Si 1.86805 * 119.99685 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47321 * 359.97438 * 23 21 19 25 25 H 1.48495 * 109.47129 * 119.99949 * 23 21 19 26 26 H 1.48502 * 109.46555 * 240.00108 * 23 21 19 27 27 H 1.09005 * 109.46880 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47375 * 300.00190 * 1 2 3 29 29 H 1.09000 * 109.47020 * 60.00531 * 1 2 3 30 30 H 1.08995 * 109.47375 * 239.99810 * 2 1 3 31 31 H 1.09000 * 109.47020 * 119.99468 * 2 1 3 32 32 H 1.09004 * 109.47149 * 59.99749 * 3 2 1 33 33 H 1.09000 * 109.46805 * 299.99601 * 3 2 1 34 34 H 1.08002 * 119.92458 * 0.02562 * 8 7 4 35 35 H 1.08013 * 119.84875 * 179.97438 * 9 8 7 36 36 H 1.08003 * 119.93261 * 180.02562 * 10 9 8 37 37 H 1.08003 * 120.07671 * 179.97438 * 11 10 9 38 38 H 0.96996 * 119.99752 * 0.02562 * 15 13 12 39 39 H 1.09001 * 109.47129 * 299.99914 * 16 15 13 40 40 H 1.08995 * 109.47225 * 59.99949 * 16 15 13 41 41 H 1.09001 * 109.47109 * 299.99932 * 17 16 15 42 42 H 1.09004 * 109.47223 * 59.99665 * 17 16 15 43 43 H 1.09001 * 109.47269 * 300.00060 * 18 17 16 44 44 H 1.09004 * 109.47172 * 59.99860 * 18 17 16 45 45 H 0.97004 * 120.00014 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 16 3.8539 1.4427 0.0008 5 8 4.3531 0.9521 -1.2360 6 8 4.3521 0.9525 1.2380 7 6 4.2935 3.1489 -0.0001 8 6 4.9543 3.6932 1.0821 9 6 5.2996 5.0328 1.0831 10 6 4.9859 5.8355 0.0005 11 6 4.3255 5.3039 -1.0876 12 6 3.9792 3.9515 -1.0976 13 6 3.2772 3.3735 -2.2634 14 8 2.9721 2.1969 -2.2670 15 7 2.9756 4.1511 -3.3220 16 6 2.2795 3.5785 -4.4769 17 6 2.0596 4.6659 -5.5305 18 6 1.3332 4.0677 -6.7368 19 6 1.1160 5.1389 -7.7743 20 1 1.4619 6.1455 -7.5917 21 6 0.4757 4.8337 -8.9567 22 7 0.0540 3.6080 -9.1789 23 14 0.2071 6.1614 -10.2431 24 1 0.7699 7.4456 -9.7540 25 1 0.8853 5.7720 -11.5054 26 1 -1.2481 6.3221 -10.4920 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9565 0.8900 33 1 1.6766 1.9563 -0.8900 34 1 5.2024 3.0721 1.9300 35 1 5.8164 5.4541 1.9329 36 1 5.2587 6.8804 0.0074 37 1 4.0808 5.9314 -1.9318 38 1 3.2194 5.0900 -3.3192 39 1 2.8817 2.7759 -4.9028 40 1 1.3158 3.1804 -4.1595 41 1 1.4572 5.4681 -5.1044 42 1 3.0232 5.0644 -5.8480 43 1 1.9359 3.2656 -7.1629 44 1 0.3696 3.6688 -6.4197 45 1 -0.3968 3.3934 -10.0106 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171501943.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:29:35 Heat of formation + Delta-G solvation = -86.488823 kcal Electronic energy + Delta-G solvation = -27306.621431 eV Core-core repulsion = 23416.421329 eV Total energy + Delta-G solvation = -3890.200103 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 2.71 seconds Orbital eigenvalues (eV) -40.58665 -38.70473 -36.92154 -35.83090 -35.60171 -34.89193 -33.53841 -32.10033 -31.71482 -30.84678 -27.79306 -26.95630 -24.53855 -23.59223 -22.86745 -21.93809 -20.94265 -20.38026 -19.07722 -18.35986 -17.14814 -16.60418 -16.24615 -16.23433 -16.10926 -15.62793 -15.35813 -15.00364 -14.93316 -14.61590 -14.45501 -14.21671 -13.62101 -13.58812 -13.16119 -12.75578 -12.70526 -12.48025 -12.34442 -12.11201 -11.96197 -11.91188 -11.82685 -11.65327 -11.50639 -11.07378 -10.99089 -10.91150 -10.81114 -10.61241 -10.41045 -10.07279 -9.93939 -9.78403 -9.50134 -9.48461 -9.16280 -8.91766 -8.41676 -6.06012 -4.09336 0.00644 0.28996 0.65178 2.51972 2.86762 3.03708 3.26946 3.29428 3.34753 3.37770 3.80407 4.12878 4.32442 4.39572 4.41564 4.43962 4.51048 4.70331 4.83208 4.97310 4.99867 5.12493 5.25897 5.30008 5.34342 5.48070 5.52620 5.55248 5.63708 5.66758 5.68268 5.83055 5.84080 5.88309 6.03180 6.06459 6.28066 6.31073 6.50520 6.69640 6.91234 7.39452 7.58540 7.70221 7.92187 8.02944 8.32997 8.97393 9.55191 11.05218 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.013977 B = 0.002676 C = 0.002345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2002.821947 B =10459.031353 C =11935.879533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.113 4.113 3 C -0.598 4.598 4 S 2.507 3.493 5 O -0.903 6.903 6 O -0.959 6.959 7 C -0.614 4.614 8 C -0.032 4.032 9 C -0.119 4.119 10 C -0.075 4.075 11 C -0.106 4.106 12 C -0.040 4.040 13 C 0.527 3.473 14 O -0.510 6.510 15 N -0.708 5.708 16 C 0.113 3.887 17 C -0.122 4.122 18 C 0.024 3.976 19 C -0.523 4.523 20 H 0.056 0.944 21 C 0.057 3.943 22 N -0.892 5.892 23 Si 0.893 3.107 24 H -0.273 1.273 25 H -0.284 1.284 26 H -0.284 1.284 27 H 0.061 0.939 28 H 0.055 0.945 29 H 0.062 0.938 30 H 0.083 0.917 31 H 0.072 0.928 32 H 0.120 0.880 33 H 0.154 0.846 34 H 0.151 0.849 35 H 0.137 0.863 36 H 0.138 0.862 37 H 0.138 0.862 38 H 0.399 0.601 39 H 0.073 0.927 40 H 0.070 0.930 41 H 0.055 0.945 42 H 0.055 0.945 43 H 0.020 0.980 44 H 0.020 0.980 45 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.905 1.773 24.671 25.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.151 4.151 3 C -0.729 4.729 4 S 2.685 3.315 5 O -0.901 6.901 6 O -0.957 6.957 7 C -0.699 4.699 8 C -0.051 4.051 9 C -0.138 4.138 10 C -0.093 4.093 11 C -0.126 4.126 12 C -0.044 4.044 13 C 0.313 3.687 14 O -0.389 6.389 15 N -0.358 5.358 16 C -0.009 4.009 17 C -0.160 4.160 18 C -0.014 4.014 19 C -0.561 4.561 20 H 0.074 0.926 21 C -0.144 4.144 22 N -0.531 5.531 23 Si 0.721 3.279 24 H -0.198 1.198 25 H -0.210 1.210 26 H -0.210 1.210 27 H 0.080 0.920 28 H 0.074 0.926 29 H 0.081 0.919 30 H 0.101 0.899 31 H 0.091 0.909 32 H 0.139 0.861 33 H 0.172 0.828 34 H 0.169 0.831 35 H 0.155 0.845 36 H 0.156 0.844 37 H 0.156 0.844 38 H 0.235 0.765 39 H 0.091 0.909 40 H 0.088 0.912 41 H 0.073 0.927 42 H 0.074 0.926 43 H 0.039 0.961 44 H 0.038 0.962 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 7.179 0.177 24.485 25.517 hybrid contribution -0.408 2.231 -0.844 2.420 sum 6.770 2.408 23.641 24.709 Atomic orbital electron populations 1.21699 0.93890 1.02184 1.02423 1.21222 0.98544 0.91947 1.03413 1.30467 1.23767 1.06493 1.12153 1.05292 0.78271 0.73623 0.74310 1.93645 1.77004 1.76682 1.42724 1.93515 1.78411 1.77761 1.45974 1.30980 1.12140 1.26419 1.00333 1.21060 0.92294 0.95608 0.96112 1.21525 0.99515 0.93841 0.98933 1.21438 0.94753 1.00444 0.92669 1.21495 0.97976 0.93947 0.99160 1.19725 0.97412 0.94237 0.93047 1.18423 0.80413 0.86591 0.83294 1.90849 1.52966 1.14499 1.80611 1.46059 1.58618 1.13226 1.17858 1.21815 0.96620 0.97949 0.84496 1.21916 1.01077 0.96693 0.96325 1.19031 0.95351 0.96415 0.90585 1.21221 1.37604 0.95889 1.01434 0.92612 1.25031 0.95631 0.95418 0.98367 1.69971 1.39349 1.18440 1.25384 0.86530 0.77858 0.81959 0.81595 1.19779 1.20966 1.20996 0.92026 0.92563 0.91881 0.89854 0.90923 0.86123 0.82807 0.83147 0.84507 0.84447 0.84440 0.76544 0.90866 0.91153 0.92665 0.92602 0.96129 0.96213 0.92930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 42. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.30 9.91 37.16 0.37 -0.93 16 2 C -0.11 -1.17 5.94 -26.73 -0.16 -1.33 16 3 C -0.60 -6.43 5.33 37.16 0.20 -6.23 16 4 S 2.51 33.00 4.50 -107.50 -0.48 32.52 16 5 O -0.90 -15.66 14.81 -67.51 -1.00 -16.66 16 6 O -0.96 -13.53 16.74 -57.54 -0.96 -14.50 16 7 C -0.61 -7.22 5.61 -39.18 -0.22 -7.44 16 8 C -0.03 -0.30 9.49 -39.64 -0.38 -0.68 16 9 C -0.12 -0.86 10.04 -39.49 -0.40 -1.26 16 10 C -0.08 -0.52 10.03 -39.64 -0.40 -0.92 16 11 C -0.11 -0.93 9.54 -39.19 -0.37 -1.30 16 12 C -0.04 -0.48 5.86 -104.96 -0.62 -1.09 16 13 C 0.53 7.45 7.36 -12.33 -0.09 7.36 16 14 O -0.51 -8.44 9.08 -19.82 -0.18 -8.62 16 15 N -0.71 -9.40 5.51 -61.25 -0.34 -9.73 16 16 C 0.11 1.86 5.67 -4.04 -0.02 1.83 16 17 C -0.12 -2.25 5.27 -26.74 -0.14 -2.39 16 18 C 0.02 0.58 4.97 -27.89 -0.14 0.45 16 19 C -0.52 -14.26 9.11 -34.44 -0.31 -14.58 16 20 H 0.06 1.46 7.74 -52.49 -0.41 1.06 16 21 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 22 N -0.89 -26.37 13.29 55.43 0.74 -25.63 16 23 Si 0.89 21.13 29.54 -169.99 -5.02 16.11 16 24 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 25 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 26 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 31 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.12 0.94 8.14 -51.92 -0.42 0.52 16 33 H 0.15 1.81 5.45 -51.92 -0.28 1.53 16 34 H 0.15 1.24 7.21 -52.49 -0.38 0.86 16 35 H 0.14 0.57 8.06 -52.48 -0.42 0.15 16 36 H 0.14 0.54 8.06 -52.48 -0.42 0.12 16 37 H 0.14 0.88 6.41 -52.48 -0.34 0.54 16 38 H 0.40 4.10 6.51 -40.82 -0.27 3.83 16 39 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 40 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 41 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 43 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 379.83 15.07 5.72 5.72 Total: -1.00 -35.72 379.83 -11.02 -46.74 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: -6.72 Total: 1.05 kcal Atomic # 6 Polarization: -24.23 SS G_CDS: -2.78 Total: -27.00 kcal Atomic # 7 Polarization: -35.77 SS G_CDS: 0.40 Total: -35.37 kcal Atomic # 8 Polarization: -37.63 SS G_CDS: -2.14 Total: -39.77 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Atomic # 16 Polarization: 33.00 SS G_CDS: -0.48 Total: 32.52 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -35.72 -11.02 -46.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171501943.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.746 kcal (2) G-P(sol) polarization free energy of solvation -35.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.71 seconds